mRNA_Ecto-sp13_S_contig76324.18851.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76324.18851.1
Unique NamemRNA_Ecto-sp13_S_contig76324.18851.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: D7FMF3_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF3_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.470e-28
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1
Query:    7 QSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGVQ 168
            +SYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYI+PDPDMAPMLKRFRKEGVQ
Sbjct:  284 KSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIMPDPDMAPMLKRFRKEGVQ 337          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: A0A6H5JY87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY87_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.160e-28
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1
Query:    7 QSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGV 165
            +SYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGV
Sbjct:  345 KSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGV 397          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: A0A835Z4H4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.090e-20
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    7 QSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGVQ 168
            Q YE+LF DVR+CVDLCHRDGVIKDRVAEDPA+YI+PD  + PML+R + EG+Q
Sbjct:  173 QPYEKLFSDVRQCVDLCHRDGVIKDRVAEDPARYIMPDTQLLPMLRRLKAEGIQ 226          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: A0A6S8IL41_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8IL41_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-17
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    7 QSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGVQ 168
            ++YE +++D+R+CVDLCHRDGVIKD VA +P KY++ DP + PML+RFR EG++
Sbjct:  205 KTYEEIYKDIRECVDLCHRDGVIKDEVAVNPEKYLVLDPGLLPMLRRFRNEGIK 258          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: A0A7S2VDW1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDW1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.900e-17
Identity = 32/56 (57.14%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 NSQSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGVQ 168
            N ++YE ++RDVR+CVDLCHRDGVIKD VA +P  +I+ DP++ PML+R++++GV+
Sbjct:   22 NFKTYEEIYRDVRECVDLCHRDGVIKDEVARNPDPFIVKDPNLLPMLRRYKEDGVK 77          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: A0A7S0SZA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZA1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.790e-17
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    7 QSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEG 162
            QSYE++++D+R CVDLCHRDGVIKD V +DPA YII D ++ PML+R RK G
Sbjct:   88 QSYEQMYKDIRACVDLCHRDGVIKDTVLKDPASYIIYDENIVPMLRRLRKSG 139          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: A0A7S1ZFY4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZFY4_TRICV)

HSP 1 Score: 82.0 bits (201), Expect = 7.220e-17
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 NSQSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGVQ 168
            + ++Y  ++R VR+CVDLCHRDGVIKD VA +P KYI+PDP++ PML+ +R+ GV+
Sbjct:  280 DEKTYGEIYRQVRECVDLCHRDGVIKDEVARNPEKYIVPDPNLIPMLQSYRESGVK 335          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: A0A1E7FKV0_9STRA (HAD-superfamily hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKV0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.320e-17
Identity = 32/56 (57.14%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 NSQSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEGVQ 168
            +S++Y  +++++R+CVDLCHRDGVIKD VA +P KYI+ D  M PMLKR+RK+G++
Sbjct:  132 DSKTYAEIYKEIRECVDLCHRDGVIKDEVARNPEKYIVLDNGMVPMLKRYRKDGMK 187          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: W7T4C7_9STRA (Imp-gmp specific 5 nucleotidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4C7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.190e-15
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   10 SYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEG 162
            SY  ++  +R+CVDLCHRDGVIKDRVAEDP  YI+PDP M  ML+++++ G
Sbjct:  232 SYAAIYSHIRQCVDLCHRDGVIKDRVAEDPGAYIVPDPGMVTMLEQYKESG 282          
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Match: L1J0X4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J0X4_GUITC)

HSP 1 Score: 77.8 bits (190), Expect = 2.220e-15
Identity = 31/53 (58.49%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    4 SQSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRFRKEG 162
            S+SY+++++DVR+ VDLCHRDGVIKD+VA+DP KYI  +P +  ML+R+R+ G
Sbjct:  272 SKSYKQIYKDVRRSVDLCHRDGVIKDKVAQDPGKYIQSEPGIVDMLRRYRRSG 324          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76324.18851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMF3_ECTSI1.470e-2896.305'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JY87_9PHAE3.160e-2898.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z4H4_9STRA1.090e-2072.225'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A6S8IL41_9STRA1.500e-1759.26Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2VDW1_9STRA1.900e-1757.14Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S0SZA1_9STRA3.790e-1765.38Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S1ZFY4_TRICV7.220e-1757.14Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1E7FKV0_9STRA9.320e-1757.14HAD-superfamily hydrolase n=1 Tax=Fragilariopsis c... [more]
W7T4C7_9STRA1.190e-1560.78Imp-gmp specific 5 nucleotidase n=3 Tax=Monodopsid... [more]
L1J0X4_GUITC2.220e-1558.49Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76324contigEcto-sp13_S_contig76324:467..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.8
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog2880.D7FMF3
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.5'-nucleotidase activity
EggNOG OGsKOG2469@1,KOG2469@2759
Cds size168
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464033.838245-CDS-Ecto-sp13_S_contig76324:466..6341681464033.838245-CDS-Ecto-sp13_S_contig76324:466..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76324 467..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76324.18851.1prot_Ecto-sp13_S_contig76324.18851.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76324 467..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76324.18851.1

>prot_Ecto-sp13_S_contig76324.18851.1 ID=prot_Ecto-sp13_S_contig76324.18851.1|Name=mRNA_Ecto-sp13_S_contig76324.18851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
NSQSYERLFRDVRKCVDLCHRDGVIKDRVAEDPAKYIIPDPDMAPMLKRF
RKEGVQ
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mRNA from alignment at Ecto-sp13_S_contig76324:467..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76324.18851.1 ID=mRNA_Ecto-sp13_S_contig76324.18851.1|Name=mRNA_Ecto-sp13_S_contig76324.18851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76324:467..634+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACTCCCAGTCCTACGAGCGGCTGTTCCGAGACGTAAGGAAGTGCGTTGA TTTGTGTCATCGCGACGGGGTCATCAAGGACAGGGTGGCAGAGGATCCGG CTAAATACATCATCCCGGACCCGGACATGGCGCCGATGCTAAAGCGGTTC CGCAAGGAGGGAGTACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76324:467..634+

>mRNA_Ecto-sp13_S_contig76324.18851.1 ID=mRNA_Ecto-sp13_S_contig76324.18851.1|Name=mRNA_Ecto-sp13_S_contig76324.18851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76324:467..634+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACTCCCAGTCCTACGAGCGGCTGTTCCGAGACGTAAGGAAGTGCGTTGA
TTTGTGTCATCGCGACGGGGTCATCAAGGACAGGGTGGCAGAGGATCCGG
CTAAATACATCATCCCGGACCCGGACATGGCGCCGATGCTAAAGCGGTTC
CGCAAGGAGGGAGTACAG
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