mRNA_Ecto-sp13_S_contig7632.18849.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7632.18849.1
Unique NamemRNA_Ecto-sp13_S_contig7632.18849.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7632.18849.1 vs. uniprot
Match: D8LTZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ4_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 5.570e-53
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    1 VRFMALSIVGLLFQRSRVVRKVIVADLKNFMNLAVGHDARHPLPGPPAAAVALREKALALMEEWNESHGDLYKGLRAAYRFLREGKRMKFPELQVR 288
            VRFMALSIVGLLFQRSRVVRKVIVADLKNFMNLAVGHDARHPLPGPPAAAVALREKALALMEEWNESHGDLYKGLRAAYRFLREGKRMKFPELQ R
Sbjct:  145 VRFMALSIVGLLFQRSRVVRKVIVADLKNFMNLAVGHDARHPLPGPPAAAVALREKALALMEEWNESHGDLYKGLRAAYRFLREGKRMKFPELQAR 240
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BLAST of mRNA_Ecto-sp13_S_contig7632.18849.1 vs. uniprot
Match: A0A383W5H2_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W5H2_TETOB)

HSP 1 Score: 75.1 bits (183), Expect = 2.690e-13
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    4 RFMALSIVGLLFQRSRVVRKVIVADLKNFMNLAVGHDARHPLPGPPAAAVALREKALALMEEWNESHGDLYKGLRAAYRFLREGKRMKFPELQVR 288
            R +A+ +  +LF RS+  R+V+      F+ L VGH    PLP P AAA ALRE++L ++E+W+E+ G  Y  + AAY++L+  K+ KFPE+  R
Sbjct:   62 RKLAVELCDVLFSRSKCFRRVLAGQFSQFVELGVGHKPDKPLPPPAAAAAALRERSLEVIEKWHEAWGLHYPQVTAAYKYLK--KQYKFPEISSR 154
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BLAST of mRNA_Ecto-sp13_S_contig7632.18849.1 vs. uniprot
Match: A0A7J7PNL4_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PNL4_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-11
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    4 RFMALSIVGLLFQRSRVVRKVIVADLKNFMNLAVGHDARHPLPGPPAAAVALREKALALMEEWNESHGDLYKGLRAAYRFLREGKRMKFPELQVR 288
            R +++ +  +LF RS+  R+ +      F+ L+VGH     LP P AAAVALRE+AL ++E+W+E+ G  +  + AAY++L+  K+ KFPE+  R
Sbjct:   62 RKLSVELCDVLFSRSKCFRRALAGQFSQFVELSVGHKPDKLLPPPAAAAVALRERALEVIEQWHEAWGLHHPQVTAAYKYLK--KQYKFPEISSR 154
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BLAST of mRNA_Ecto-sp13_S_contig7632.18849.1 vs. uniprot
Match: A0A5J4Y4J3_9CHLO (UV-stimulated scaffold A protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y4J3_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 1.330e-10
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:    4 RFMALSIVGLLFQRSRVVRKVIVADLKNFMNLAVGHDARHPLPGPPAAAVALREKALALMEEWNESHGDLYKGLRAAYRFLREGKRMKFPELQVR 288
            R   ++I   LFQRS+  R  + A    F+ L++G     PLPGP   A  LR++AL ++E+WN+  G  YK +   + +L+    M+FPE++ R
Sbjct:   66 RLHVVNISDQLFQRSKAFRTHVTAHFTEFLELSLGFRHDKPLPGPANIANQLRDRALEIVEQWNDKFGSSYKQVALGFNYLKHNMAMRFPEVRAR 160
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BLAST of mRNA_Ecto-sp13_S_contig7632.18849.1 vs. uniprot
Match: A0A6P7UCD8_IXOSC (UV-stimulated scaffold protein A-like isoform X1 n=4 Tax=Ixodes TaxID=6944 RepID=A0A6P7UCD8_IXOSC)

HSP 1 Score: 55.1 bits (131), Expect = 2.620e-6
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    4 RFMALSIVGLLFQRSRVVRKVIVADLKNFMNLAVGHDARHPLPGPPAAAVALREKALALMEEWNESHGDLYKGLRAAYRFLREGK 258
            R  A+ +   LF+RS + R +++   + FM L    +   PLPG  AAA  L+EK+LA+++EW+E  G  YK L     FL+  K
Sbjct:   68 RLDAVRLTDELFKRSHLFRTLLLEHFEKFMELVAETNLDLPLPGSEAAARNLKEKSLAVIDEWHEKFGANYKLLSLGVNFLKNRK 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7632.18849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTZ4_ECTSI5.570e-5398.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A383W5H2_TETOB2.690e-1342.11Uncharacterized protein n=2 Tax=Tetradesmus obliqu... [more]
A0A7J7PNL4_9CHLO1.490e-1140.00Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A5J4Y4J3_9CHLO1.330e-1035.79UV-stimulated scaffold A protein n=1 Tax=Trebouxia... [more]
A0A6P7UCD8_IXOSC2.620e-637.65UV-stimulated scaffold protein A-like isoform X1 n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7632contigEcto-sp13_S_contig7632:8..657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score180.6
Seed ortholog evalue4.2e-43
Seed eggNOG ortholog2880.D8LTZ4
Preferred nameUVSSA
Model size366
Hectar predicted targeting categoryother localisation
GOsGO:0000993,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016567,GO:0019538,GO:0019899,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0090304,GO:1901360,GO:1901564
Exons2
EggNOG free text desc.transcription-coupled nucleotide-excision repair
EggNOG OGsKOG2374@1,KOG2374@2759
Cds size357
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464033.6666143-CDS-Ecto-sp13_S_contig7632:7..2891681464033.6666143-CDS-Ecto-sp13_S_contig7632:7..289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7632 8..289 -
1681464033.6834385-CDS-Ecto-sp13_S_contig7632:573..6481681464033.6834385-CDS-Ecto-sp13_S_contig7632:573..648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7632 574..648 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464033.6974573-UTR-Ecto-sp13_S_contig7632:648..6571681464033.6974573-UTR-Ecto-sp13_S_contig7632:648..657Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7632 649..657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7632.18849.1prot_Ecto-sp13_S_contig7632.18849.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7632 8..648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7632.18849.1

>prot_Ecto-sp13_S_contig7632.18849.1 ID=prot_Ecto-sp13_S_contig7632.18849.1|Name=mRNA_Ecto-sp13_S_contig7632.18849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MALSIVGLLFQRSRVVRKVIVADLKNFMNLAVGHDARHPLPGPPAAAVAL
REKALALMEEWNESHGDLYKGLRAAYRFLREGKRMKFPELQVRQIDRQRK
TERQTDRRMERNVSETGRQ
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mRNA from alignment at Ecto-sp13_S_contig7632:8..657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7632.18849.1 ID=mRNA_Ecto-sp13_S_contig7632.18849.1|Name=mRNA_Ecto-sp13_S_contig7632.18849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7632:8..657- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGGTTCATGGCCCTGTCCATCGTGGGGCTGCTGTTTCAGCGTTCGAG
GGTGGTCCGTAAAGTCATAGTCGCCGATCTCAAGGTGGGTGCGTGGGTAT
GCGCCCCTCTTCTCTTGCGGATGGCGAGAAGGCGACAGACTCTGCTACCA
CCACGGCGGTGATTGAGAGTGACCTACCTCACCTTGAACCGACAGAGACT
TGTCAGTGACCAGGTGAATCGAAAACAGCAGGCACAGGCAAGCGATGTCC
AATCCGGTAATGATGAACCAACCCTCCAACGCGACCCCCTCCTGCCCTCG
CGCCGCCCCTCTATTTGTCTCCGTATGCTTGCCCCTATAACATTTGACCT
AACATCTACACGAGGCAGAACTTCATGAACCTAGCGGTCGGCCACGACGC
GCGGCATCCGCTCCCCGGCCCGCCCGCCGCCGCGGTGGCCCTGCGCGAGA
AGGCTCTGGCGCTCATGGAGGAGTGGAACGAGTCCCATGGCGACCTGTAC
AAGGGCCTCCGCGCGGCCTACCGGTTTCTGAGGGAGGGCAAGCGAATGAA
GTTCCCGGAGCTGCAGGTCAGACAGATAGACAGGCAGAGAAAGACAGAAA
GGCAGACAGACAGACGGATGGAAAGAAATGTCAGTGAGACAGGTAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7632:8..657-

>mRNA_Ecto-sp13_S_contig7632.18849.1 ID=mRNA_Ecto-sp13_S_contig7632.18849.1|Name=mRNA_Ecto-sp13_S_contig7632.18849.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7632:8..657- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCTGTCCATCGTGGGGCTGCTGTTTCAGCGTTCGAGGGTGGTCCG
TAAAGTCATAGTCGCCGATCTCAAGAACTTCATGAACCTAGCGGTCGGCC
ACGACGCGCGGCATCCGCTCCCCGGCCCGCCCGCCGCCGCGGTGGCCCTG
CGCGAGAAGGCTCTGGCGCTCATGGAGGAGTGGAACGAGTCCCATGGCGA
CCTGTACAAGGGCCTCCGCGCGGCCTACCGGTTTCTGAGGGAGGGCAAGC
GAATGAAGTTCCCGGAGCTGCAGGTCAGACAGATAGACAGGCAGAGAAAG
ACAGAAAGGCAGACAGACAGACGGATGGAAAGAAATGTCAGTGAGACAGG
TAGGCAA
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