mRNA_Ecto-sp13_S_contig763.18847.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig763.18847.1
Unique NamemRNA_Ecto-sp13_S_contig763.18847.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A6H5KK91_9PHAE (Abhydrolase_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK91_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 3.170e-65
Identity = 102/118 (86.44%), Postives = 105/118 (88.98%), Query Frame = 1 
Query:    1 MAASAAPIDLEHVSGDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDAVVRTSCEPTPRAISKSVFGK 354
            MAASAAPID EHVSGDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDAV   +     RAI ++   K
Sbjct:   44 MAASAAPIDFEHVSGDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDAVGFNASADRVRAILEAEKAK 161
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A6V1K3U7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K3U7_HETAK)

HSP 1 Score: 123 bits (308), Expect = 6.390e-32
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   43 GDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPED 291
            GD++GG GITL+P+D  YTNVVVW HGLGDTA GW S MP   L  TKFILPTA TRPITLN G  MPGWSDI GL ++  ED
Sbjct:   76 GDSIGGDGITLIPEDEEYTNVVVWNHGLGDTAMGWYSAMPAFGLTKTKFILPTAPTRPITLNMGMAMPGWSDIRGLDKEDDED 158
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: W7T5J0_9STRA (Lysophospholipase ii (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5J0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.690e-27
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:   46 DTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDAVVRTSCEPTPRAISKSVFGKV 357
            D +GG+GITL P  G   + ++W+HGLGD+  GWA        P T+ I PTA TRPITLNGG+ MPGW DI GL E SPED   R   E   + I++ V G+V
Sbjct:   56 DNVGGAGITLNPVGGPAQSSIIWMHGLGDSGEGWAGAFDPKVFPTTRMIFPTAPTRPITLNGGFPMPGWFDINGLDESSPED---RAGFEEAKQRIARIVQGEV 156
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A7S2B6Q9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6Q9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.820e-27
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:   31 EHVSGDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNT-KFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDA 294
            E   GD+LGG GI L P      +VV+WLHGLGDTA GW   M  L LP+T KFILPTA T PI++N G  MPGW+DI+GL  +SPEDA
Sbjct:   38 EAARGDSLGGDGIILEPPHNT-DSVVIWLHGLGDTAQGWYGAMGSLGLPDTTKFILPTAATCPISINAGMPMPGWTDIYGLDANSPEDA 125
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A4D9D0F4_9STRA (Abhydrolase_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0F4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.970e-27
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:   46 DTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDAVVRTSCEPTPRAISKSVFGKV 357
            D +GG+GITL P  G   + ++W+HGLGD+  GWA        P T+ I PTA TRPITLNGG+ MPGW DI GL E SPED   R   E   + I++ V G+V
Sbjct:   56 DNVGGAGITLNPVGGPAQSSIIWMHGLGDSGEGWAGAFDPKVFPTTRMIFPTAPTRPITLNGGFPMPGWFDINGLDESSPED---RAGFEEAKQRIARIVQGEV 156
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A7S2SSS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSS9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.630e-26
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 MAASAAPI-DLEHVSGDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDA 294
            MA+S A + D+    GD +GG G+TL P  G +  VV+W+HGLGDTA GW   +  L  P  K +LPTA+TRPITLNGG  MPGW DI GL   +PEDA
Sbjct:   37 MASSNAGVPDIRMEEGDGIGGRGVTLTPS-GGHDGVVIWMHGLGDTAMGWYQALWGLA-PRMKIVLPTAETRPITLNGGMSMPGWFDIVGLDSSAPEDA 133
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A7S0SWW0_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWW0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.670e-25
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   88 GAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPED 291
            G Y  V+ W HGLGDTA GWA ++P+L L  TK+ILPTA  RPITLNGG  MPGWSDI+GL E S ED
Sbjct:    2 GEYNRVLFWFHGLGDTADGWADLVPELNLEKTKYILPTAPIRPITLNGGMSMPGWSDIYGLDETSKED 69
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A7V5M3T8_9BACT (Abhydrolase_2 domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5M3T8_9BACT)

HSP 1 Score: 105 bits (263), Expect = 4.300e-25
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   43 GDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPED 291
            GD  GG+G T  P  G +T  +VWLHGLGDTA GW+S +P+L+L +T+ ILPTADT P+TLN G  MP W+DI+ L E++ ED
Sbjct:   98 GDAHGGAGKTFEPLRGKHTATLVWLHGLGDTADGWSSAVPELRLSSTRVILPTADTVPVTLNFGTRMPAWADIYSLSENARED 180
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A482SRI5_9ARCH (Abhydrolase_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRI5_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 8.940e-25
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:   22 IDLEHVSGDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPG 249
            + ++ +  DT+GG GIT +P  G Y  VVVW+HGLGDTA GWAS++P+L LPN K ILPTA+   I++N GY+MPG
Sbjct:   23 VRMQALRTDTIGGRGITYMPTTGKYDGVVVWMHGLGDTADGWASVVPELGLPNVKLILPTANNVAISINNGYKMPG 98
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BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Match: A0A7J7IJG5_9RHOD (Abhydrolase_2 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJG5_9RHOD)

HSP 1 Score: 103 bits (257), Expect = 1.650e-24
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:   43 GDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPED 291
            GD  GG+G T  P  G + + ++WLHGLGDTA GW+S +P+L+L +T+ ILPTADT P+TLN G  MP W+DI+ L E + ED
Sbjct:   58 GDAHGGAGKTFEPLRGKHRSTLIWLHGLGDTADGWSSAVPELRLSSTRVILPTADTIPVTLNFGARMPAWADIYSLSEHARED 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig763.18847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK91_9PHAE3.170e-6586.44Abhydrolase_2 domain-containing protein n=2 Tax=Ec... [more]
A0A6V1K3U7_HETAK6.390e-3268.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T5J0_9STRA1.690e-2750.00Lysophospholipase ii (Fragment) n=1 Tax=Nannochlor... [more]
A0A7S2B6Q9_9STRA5.820e-2759.55Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4D9D0F4_9STRA5.970e-2750.00Abhydrolase_2 domain-containing protein n=2 Tax=Mo... [more]
A0A7S2SSS9_9STRA3.630e-2654.55Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0SWW0_9STRA1.670e-2566.18Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7V5M3T8_9BACT4.300e-2556.63Abhydrolase_2 domain-containing protein n=2 Tax=ce... [more]
A0A482SRI5_9ARCH8.940e-2556.58Abhydrolase_2 domain-containing protein n=1 Tax=ar... [more]
A0A7J7IJG5_9RHOD1.650e-2454.22Abhydrolase_2 domain-containing protein n=1 Tax=Cy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig763contigEcto-sp13_S_contig763:19079..21713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score204.5
Seed ortholog evalue2.7e-50
Seed eggNOG ortholog2880.D7FSL3
Model size357
KEGG rclassRC00037,RC00094
KEGG koko:K06130
KEGG ReactionR02747,R03417
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.acyl-protein thioesterase
EggNOG OGsCOG0400@1,KOG2112@2759
Ec32 ortholog descriptionsimilar to lysophospholipase II
Ec32 orthologEc-04_000440.1
EC3.1.1.5
Cds size357
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464033.479242-CDS-Ecto-sp13_S_contig763:19078..191621681464033.479242-CDS-Ecto-sp13_S_contig763:19078..19162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 19079..19162 +
1681464033.4952004-CDS-Ecto-sp13_S_contig763:19783..198341681464033.4952004-CDS-Ecto-sp13_S_contig763:19783..19834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 19784..19834 +
1681464033.5151217-CDS-Ecto-sp13_S_contig763:20669..207461681464033.5151217-CDS-Ecto-sp13_S_contig763:20669..20746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 20670..20746 +
1681464033.5257337-CDS-Ecto-sp13_S_contig763:21568..217131681464033.5257337-CDS-Ecto-sp13_S_contig763:21568..21713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 21569..21713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig763.18847.1prot_Ecto-sp13_S_contig763.18847.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig763 19079..21713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig763.18847.1

>prot_Ecto-sp13_S_contig763.18847.1 ID=prot_Ecto-sp13_S_contig763.18847.1|Name=mRNA_Ecto-sp13_S_contig763.18847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MAASAAPIDLEHVSGDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWA
SMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQEDSPEDAVV
RTSCEPTPRAISKSVFGKV
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mRNA from alignment at Ecto-sp13_S_contig763:19079..21713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig763.18847.1 ID=mRNA_Ecto-sp13_S_contig763.18847.1|Name=mRNA_Ecto-sp13_S_contig763.18847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2635bp|location=Sequence derived from alignment at Ecto-sp13_S_contig763:19079..21713+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCCAGTGCTGCACCGATTGACCTCGAGCACGTGTCCGGCGATAC
CCTCGGGGGAAGCGGCATCACTCTCGTACCTAAGGTGTGTGTGTTGGCAT
CGATGCTTGGGCTATGTATATCTCATGTGGGAAGAAATAGAGATGGAAAA
GCGGCAGATCTTCCCTTACAAGCAGTACCGCGGGAGGTGGTTCTTCATGT
CTTCTGTTCGGCGCACACAGGTACAAGGTACAAGTCTCTTGCTTGCATCC
CTGATGACAATTACTAGCACACTGCAGAGGTTTCAACATATCCTTTCGAC
AGGGGTATTGTGAAAAGAGGGAGTCGTCCTCGACAGACGTTGGGGAGATT
ATGTACCCTTTGATTGGGCCTATACAACAACAGCAGTACTATGTGCCCTC
CACTGCTGTTGGGTGCAGACATCTGCCAGTGGTCTCCAGCAGCGCAGACA
ATGTAACCAGAAACAGCAGTAGTTCGGCTTGCGCTTACTATATGCCGAAA
CAGCAGCTTTGCCGACAGCCTTCAGTGACCCCTCTACAGGGTCGGTATGT
ACCCGCCAGGTTTATGGACACATAACCAAGCACCGGCAATATACCGCGCC
ATGTCCACAACCTGCATTTCTACGAGTCGGGCCAGCCCTGAGTGTTCTCT
TCATGTCGTAGCGTCAATGATCCGTCCGCTGCCTGTTTGTATCATTTCTG
TGCAGGATGGGGCCTACACGAACGTGGTTGTGTGGCTTCACGGCCTAGGA
GATACAGTAAGTCACGCCAGTGAATGTTGCTGTTGATCGTAGTCGTCGCT
CTTTACAATTGTTGTCGTCTTGACATGGGCAAAAAGCACTCCAGGACCCC
ATGTTGACCCCGTGTTTCGCCTTCTTGCGCGATACCGCTCTTGCCATGTA
CACCTCCGGCGAAAATTGGCATACAGTACGTCAGGAACTTGCTGTTCATC
CTCGAAGTGGCCGGATTTCCTTAACTGTTGAGTCTCCGAAACACTGCCAT
TGAGCTTGGTCAGTGCCACTGTCCAGTCTTTTCGACATTGTCCATCGATC
GTGCGGTGTGTGTACTCCCCTTATCGCCAAGTCGGTCGTCGCATTGTCAG
CGTATCGCATCTAGCACCATTACAGAGAACTGCGAAATGTATCCGGAGGC
CTTGTCGAGGGGCATGTTCGCCCGGGGGGGGGGGGGGGTACAGTGACCGG
GTAGATAACCGCCATTAACGGTTGCCCGGGTACCCGTTAGATAACTGGGG
ACATATCGGTCACAACGGATGTATGTCTCTTCGAACGGTTACTTCTTCAG
TCGAGTGCGAAAGAGGGGGATACGCAAGCAGAGGCCAGTAGGACGTGTTG
TGGCAACAACAACAACAACAACAACAACAACAACAGAACAAGGACCATTC
CGTTGCACGATGGTGTCGACCCCATGCTAGCATCAACCACGCATTCTTAC
CTTGCAATGGCGTCGTTACCCTTCGCAAGCACCAACGACGTTGTCCGGTA
TCCTCATTTTCGCGATGGGGTAGTTCTGCACACAAGCAACAACCACGCCT
TCGTACTCAGCGCAATCCCGCTGCTACATGCTCGCACGCAGGCGGCTGGA
TGGGCTAGTATGATGCCGCAGTTGAAGCTCCCCAACACCAAGTTCATCCT
TCCTACCGCAGACACCAGGTGAGGTGATTGCTGTTTTCCGTAGATTGCAT
ACGGAAGACACCACACCCCTGTGAACCGACTTTCAAGGCCCGAGTACTTT
GTAGCACAAACAATGACGGTGCCGACCATCGCGGGATACATTGGAACCGT
CTCGTCGAGAGCTTTCCGAACACGCATCATTTGATTTTGGCATCCGCTTT
GCAGTGGAATAATTGAGAGCTGATAGCTTTGACATTCGGCTATAAGGGGT
GTGGCATCCTGTGCAAGCTTCGGCAGGCGAAGTCAAACCTTGCGCGGCCG
TATTTTCCATGCAGTATCTCCAAATCCTGTTTCTGGTTCGAATATGATTC
ATTCTGTCTCTTTCGAGTGGGTAGAATACTGTGTTCTGTGAGTGTGACTT
TTTCCCCAAACAAATCGTAAGGAAGTCATCTCTACCCACAGAGAAAGAGC
CCGGCACAACCTCAGCAATGAGTTCATCGTAGTTGTTTTTTTGCCTCGTT
AGTTTTTTTTCCTGTGTTTGTTTCAAAAAATCATGACGAAGTCACCCGGT
ATACCATACGATTAGGAACGAGTTCGTACTTTTTTTATTGGCCTGTTATG
CAAGGCTCTCTAGACCGCGCGTCTCGATGTTGCCTCCTTACACCCCGCAA
GGAGAGAAGCTCGCTTGCGAGCTCTTCCTCCGCCCCCGCGTATGAGCGGA
ATCACGTTGGCAATGTGGTTGATGCTGCTAGAAGCCGTTCGCTTGTCTCG
AACATTTAAGCTATTCATGCCCAAGAATAGTAATTAGCACCCGAGTTCAC
AACATTTTTCTTTTTTCTTCTCGTCTATTTTTTGCGGCAGGCCAATCACC
CTCAACGGCGGGTACGAGATGCCGGGATGGTCGGACATCTTTGGTCTCCA
GGAGGACTCTCCCGAAGACGCAGTGGTACGCACATCATGCGAACCGACAC
CAAGAGCAATTTCCAAGAGTGTGTTTGGTAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig763:19079..21713+

>mRNA_Ecto-sp13_S_contig763.18847.1 ID=mRNA_Ecto-sp13_S_contig763.18847.1|Name=mRNA_Ecto-sp13_S_contig763.18847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig763:19079..21713+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCCAGTGCTGCACCGATTGACCTCGAGCACGTGTCCGGCGATAC
CCTCGGGGGAAGCGGCATCACTCTCGTACCTAAGGATGGGGCCTACACGA
ACGTGGTTGTGTGGCTTCACGGCCTAGGAGATACAGCGGCTGGATGGGCT
AGTATGATGCCGCAGTTGAAGCTCCCCAACACCAAGTTCATCCTTCCTAC
CGCAGACACCAGGCCAATCACCCTCAACGGCGGGTACGAGATGCCGGGAT
GGTCGGACATCTTTGGTCTCCAGGAGGACTCTCCCGAAGACGCAGTGGTA
CGCACATCATGCGAACCGACACCAAGAGCAATTTCCAAGAGTGTGTTTGG
TAAGGTA
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