mRNA_Ecto-sp13_S_contig763.18846.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig763.18846.1
Unique NamemRNA_Ecto-sp13_S_contig763.18846.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: A0A6H5KRX1_9PHAE (Homeobox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX1_9PHAE)

HSP 1 Score: 813 bits (2101), Expect = 2.220e-289
Identity = 499/577 (86.48%), Postives = 507/577 (87.87%), Query Frame = 2 
Query:  353 EASLCVTTRGAQEQQRQQGPGRVSSPILLMGHQQQPLPYSPDAQVISFPDPYPHDDSDPLSFFLSSGRGXXXXXXXGLGSVADGTFGGRKATPEELMLFRSHRLLQAEAVGVVIGPLHSSSGADAAYVRKRLGLVSRAVERQVRLKVLEQTNAAVEGVRALGEGAPPAQQQSVINAERRNCHRVLSGVLDEGTATLRELSTTGGGGLGGVNVDMGMGMAFPPSALGSPATESQQLASTWEDAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHHMPPGTGRSSVFALTQMRDRSQHHHSQLGMPLGSTRMEGAGGMKQQGMGSSFGSGGGAAAPPGHNHGRLSDPSARFDGDSWGSTGXXXXXXXXXXXXRATSNVGKAKKRSGLLKKTPPSDALTDPRRPVYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITYTAAGKATPKALAANRVGGRSXXXXXXXXXXXXXXXXXXXXASGVAADAMPLRRMLSKIISRS--------VSARGGVGADTPTSTP 2059
            EASLCVTTRG Q+QQRQQG GRVSSPIL MGHQQQPLPY PDAQVISF DPYPHDDSDPLSFFLSSGRGXXXXXXXGLGSVADGTFGGRKATPEELMLFRSHRLLQAEAVGV IGPLHSS GADAAYVRKRL LVS AVERQ+RLKVLEQTNAAVEGVRALGEGAPPAQQQSVINAERRNCHRVLSGVLDEGTATL+ELSTTGGGG G V+VDMGM MA PPSALGSPATESQQLASTWEDAAT   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LHHMPPGTGRSSVFALTQMRDR QHHHSQLGM LGSTRMEGA GMKQQGMG+SFGSGGGAAAPPGH+HG LSDPSA FDGD WG+TG            RATSNVGKAK RSGLLKKTPPSDA+TDPRR VYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITYTAAGKATPKALAANRV GRSXXXXXXXXXXXXXXXXXXXX                              VSARGGVGAD PTSTP
Sbjct:   51 EASLCVTTRGPQDQQRQQGLGRVSSPILFMGHQQQPLPYPPDAQVISFTDPYPHDDSDPLSFFLSSGRGXXXXXXXGLGSVADGTFGGRKATPEELMLFRSHRLLQAEAVGVAIGPLHSSGGADAAYVRKRLRLVSTAVERQLRLKVLEQTNAAVEGVRALGEGAPPAQQQSVINAERRNCHRVLSGVLDEGTATLKELSTTGGGGQGDVSVDMGMDMALPPSALGSPATESQQLASTWEDAATSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSILHHMPPGTGRSSVFALTQMRDRPQHHHSQLGMALGSTRMEGADGMKQQGMGASFGSGGGAAAPPGHDHGGLSDPSAGFDGDLWGATGGGASVGGGGRGKRATSNVGKAKNRSGLLKKTPPSDAVTDPRRSVYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITYTAAGKATPKALAANRVVGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKMFVSARGGVGADAPTSTP 627
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: D7FSL4_ECTSI (Transcription factor protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL4_ECTSI)

HSP 1 Score: 642 bits (1655), Expect = 2.050e-224
Identity = 372/482 (77.18%), Postives = 378/482 (78.42%), Query Frame = 2 
Query:  440 MGHQQQPLPYSPDAQVISFPDPYPHDDSDPLSFFLSSGRGXXXXXXXGLGSVADGTFGGRKATPEELMLFRSHRLLQAEAVGVVIGPLHSSSGADAAYVRKRLGLVSRAVERQVRLKVLEQTNAAVEGVRALGEGAPPAQQQSVINAERRNCHRVLSGVLDEGTATLRELSTTGGGGLGGVNVDMGMGMAFPPSALGSPATESQQLASTWEDAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHHMPPGTGRSSVFALTQMRDRSQHHHSQLGMPLGSTRMEGAGGMKQQGMGSSFGSGGGAAAPPGHNHGRLSDPSARFDGDSWGSTGXXXXXXXXXXXXRATSNVGKAKKRSGLLKKTPPSDALTDPRRPVYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITYTAAGKATPKALAANRVGGRS 1885
            MGHQQQPLPY PDAQV+SFP+PYPHDDSDPLSFFLSSGRGXXXXXXXGLGSVADGTFGGRKATPEELMLFRSHRLLQAEAVGV IGPLH S GA+AAYVRKRLGLVS AVERQ+RLKVLEQTN AVEGVRALGEGAPPAQQQSVINAERRNCHRVLSGVLDEGTATLRELSTTGGGGLGGV+VDMGMGMAFPPSALGSPATESQQL                                                                            GM LGSTRMEGAGGMKQQGMG+SFGSGGGA APPGHNHG LSDPSA           XXXXXXXXXXXX    NVGKAKKRSGLLKKTPPSDALTD RRPVYNNRKGSRHRLTPQAKEILEGWLA HWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITY AAGKATPKALAANRV GRS
Sbjct:    1 MGHQQQPLPYPPDAQVLSFPEPYPHDDSDPLSFFLSSGRGXXXXXXXGLGSVADGTFGGRKATPEELMLFRSHRLLQAEAVGVAIGPLHPSGGANAAYVRKRLGLVSTAVERQLRLKVLEQTNTAVEGVRALGEGAPPAQQQSVINAERRNCHRVLSGVLDEGTATLRELSTTGGGGLGGVSVDMGMGMAFPPSALGSPATESQQL----------------------------------------------------------------------------GMALGSTRMEGAGGMKQQGMGASFGSGGGAVAPPGHNHGGLSDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXNVGKAKKRSGLLKKTPPSDALTDSRRPVYNNRKGSRHRLTPQAKEILEGWLANHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITYAAAGKATPKALAANRVVGRS 406
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: A0A0N4Z519_PARTI (Homeobox domain-containing protein n=1 Tax=Parastrongyloides trichosuri TaxID=131310 RepID=A0A0N4Z519_PARTI)

HSP 1 Score: 64.3 bits (155), Expect = 1.140e-7
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 2 
Query: 1586 VYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKI 1792
            V +N+K  R     +A  ILE +   H   PYP E  KLYLA+ C++T TQ+ NW  N R+R  + KK+
Sbjct:  178 VQHNKKRGRRNFPKEATAILEKYFKDHIDKPYPDERDKLYLAEKCNLTTTQITNWFGNKRIRCMKKKKL 246
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: A0A0B1TTQ3_OESDE (Homeobox domain protein n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1TTQ3_OESDE)

HSP 1 Score: 58.9 bits (141), Expect = 4.190e-7
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 2 
Query: 1610 RHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKK 1789
            R   + +A  IL+ +   H  +PYPTEE+K+ LA+ CHI+V QV+NW  N R+R  ++K+
Sbjct:   25 RRNFSKEATCILQKYYDSHLEHPYPTEEEKIALAEKCHISVQQVSNWFGNRRIRTKKSKR 84
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: A0A077WBY5_9FUNG (Homeobox domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WBY5_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 8.450e-7
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 2 
Query: 1526 RSGLLKK---TPPSDALTDPRRPVYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVR 1771
            RS  +KK   + PS + +D    V + +K  R  L      IL  WLAKH  +PYPTEE+K+ LAQ  ++T+ Q++NW +N R R
Sbjct:  182 RSSTIKKQSSSTPSTSTSDITSSVSHTKK-RRGNLPKPVTAILRDWLAKHKTHPYPTEEEKVALAQQTNLTINQISNWFINARRR 265
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: A0A068RNT1_9FUNG (Homeobox domain-containing protein n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RNT1_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 1.520e-6
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 2 
Query: 1502 SNVGKAKKRSGLLKKTPPSDALTDPRRPVYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVR 1771
            S+ G  KK+S     T     +T       N+ K  R  L      IL  WLAKH  +PYPTE++K+ LAQ  ++T+ Q++NW +N R R
Sbjct:  180 SSSGTIKKQSSSALPTTACSNMTS----SINHTKKRRGNLPKPVTAILRDWLAKHKKHPYPTEDEKVALAQQTNLTINQISNWFINARRR 265
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: A0A0K0G4K3_STRVS (Pre-B-cell leukemia transcription factor 4 (inferred by orthology to a human protein) n=2 Tax=Strongyloides TaxID=6247 RepID=A0A0K0G4K3_STRVS)

HSP 1 Score: 60.8 bits (146), Expect = 1.640e-6
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 2 
Query: 1586 VYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKI 1792
            V +N+K  R     +   ILE +  +H   PYP +++KL+LA+ C++T TQ+ NW  N R+R  + +K+
Sbjct:  178 VQHNKKRGRRNFPKEVTTILEKYFNEHIDRPYPNDQEKLFLAEKCNLTTTQITNWFGNKRIRCMKKEKL 246
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: UPI001CFCA5A7 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCA5A7)

HSP 1 Score: 62.4 bits (150), Expect = 2.600e-6
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 2 
Query: 1610 RHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITYTAAGKATPKALAANR 1870
            R  L   A  +L+ WL  H+L+PYP+E +K  L     +T+TQVNNW +N RVR  R     +  G ++ T +     TP+  ++ R
Sbjct:  686 RGNLPRHATNVLKSWLFSHFLHPYPSESEKKDLCMETGLTLTQVNNWFINQRVRTWRPMLESMLEGEKDKTASGGEGGTPQPSSSTR 772
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: A0A166C1X0_9AGAM (Homeobox domain-containing protein (Fragment) n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166C1X0_9AGAM)

HSP 1 Score: 55.1 bits (131), Expect = 2.710e-6
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 2 
Query: 1610 RHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVR 1765
            R +L  +A E L+ WL  H  +PYPTEE+K  +     +T++Q++NWM+NVR
Sbjct:    4 RAKLPKEATEYLKDWLHSHANHPYPTEEEKTQMCAKTGLTLSQISNWMINVR 55
[Close]
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Match: A0A077WNK0_9FUNG (Homeobox domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WNK0_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 3.450e-6
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 2 
Query: 1556 SDALTDPRRPVYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKLYLAQNCHITVTQVNNWMMNVRVR 1771
            S     PR      R+G+   L  Q  E L+ WL  H  +PYP+E++KL+LAQ   +TV Q++NW +N R R
Sbjct:  103 SQQYPQPRASTSKRRRGN---LPKQVTEYLKSWLVDHKQHPYPSEKEKLHLAQRTGLTVNQISNWFINARRR 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig763.18846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRX1_9PHAE2.220e-28986.48Homeobox domain-containing protein n=1 Tax=Ectocar... [more]
D7FSL4_ECTSI2.050e-22477.18Transcription factor protein n=1 Tax=Ectocarpus si... [more]
A0A0N4Z519_PARTI1.140e-742.03Homeobox domain-containing protein n=1 Tax=Parastr... [more]
A0A0B1TTQ3_OESDE4.190e-743.33Homeobox domain protein n=1 Tax=Oesophagostomum de... [more]
A0A077WBY5_9FUNG8.450e-741.18Homeobox domain-containing protein n=1 Tax=Lichthe... [more]
A0A068RNT1_9FUNG1.520e-637.78Homeobox domain-containing protein n=1 Tax=Lichthe... [more]
A0A0K0G4K3_STRVS1.640e-636.23Pre-B-cell leukemia transcription factor 4 (inferr... [more]
UPI001CFCA5A72.600e-635.63uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A166C1X0_9AGAM2.710e-644.23Homeobox domain-containing protein (Fragment) n=1 ... [more]
A0A077WNK0_9FUNG3.450e-640.28Homeobox domain-containing protein n=1 Tax=Lichthe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig763contigEcto-sp13_S_contig763:13885..18638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score649.4
Seed ortholog evalue1.7e-183
Seed eggNOG ortholog2880.D7FSL4
Model size2065
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsKOG0774@1,KOG0774@2759
Cds size1863
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig763.18846.1prot_Ecto-sp13_S_contig763.18846.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig763 13885..18436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464033.3737314-CDS-Ecto-sp13_S_contig763:13884..139721681464033.3737314-CDS-Ecto-sp13_S_contig763:13884..13972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 13885..13972 -
1681464033.3897693-CDS-Ecto-sp13_S_contig763:14697..149361681464033.3897693-CDS-Ecto-sp13_S_contig763:14697..14936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 14698..14936 -
1681464033.4016142-CDS-Ecto-sp13_S_contig763:15382..156041681464033.4016142-CDS-Ecto-sp13_S_contig763:15382..15604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 15383..15604 -
1681464033.4109066-CDS-Ecto-sp13_S_contig763:16278..167401681464033.4109066-CDS-Ecto-sp13_S_contig763:16278..16740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 16279..16740 -
1681464033.4227643-CDS-Ecto-sp13_S_contig763:17584..184361681464033.4227643-CDS-Ecto-sp13_S_contig763:17584..18436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig763 17585..18436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464033.4383662-UTR-Ecto-sp13_S_contig763:18436..186381681464033.4383662-UTR-Ecto-sp13_S_contig763:18436..18638Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig763 18437..18638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig763.18846.1

>prot_Ecto-sp13_S_contig763.18846.1 ID=prot_Ecto-sp13_S_contig763.18846.1|Name=mRNA_Ecto-sp13_S_contig763.18846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=621bp
MDSGSAASSSSSGAMVFPAKASSGGGGGTDSPAAVASSSTASNSSSGSVI
EASLCVTTRGAQEQQRQQGPGRVSSPILLMGHQQQPLPYSPDAQVISFPD
PYPHDDSDPLSFFLSSGRGDSDPLGFGLGSVADGTFGGRKATPEELMLFR
SHRLLQAEAVGVVIGPLHSSSGADAAYVRKRLGLVSRAVERQVRLKVLEQ
TNAAVEGVRALGEGAPPAQQQSVINAERRNCHRVLSGVLDEGTATLRELS
TTGGGGLGGVNVDMGMGMAFPPSALGSPATESQQLASTWEDAATSSSMNS
SSSNSIGSSCLTSMQLQQQPQRQQQQQQQSILHHMPPGTGRSSVFALTQM
RDRSQHHHSQLGMPLGSTRMEGAGGMKQQGMGSSFGSGGGAAAPPGHNHG
RLSDPSARFDGDSWGSTGGGASVGGGGGGKRATSNVGKAKKRSGLLKKTP
PSDALTDPRRPVYNNRKGSRHRLTPQAKEILEGWLAKHWLNPYPTEEQKL
YLAQNCHITVTQVNNWMMNVRVRRCRTKKIGLATGPEEITYTAAGKATPK
ALAANRVGGRSSSSSSIAAPASSSKQEGGGGASGVAADAMPLRRMLSKII
SRSVSARGGVGADTPTSTPV*
back to top

mRNA from alignment at Ecto-sp13_S_contig763:13885..18638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig763.18846.1 ID=mRNA_Ecto-sp13_S_contig763.18846.1|Name=mRNA_Ecto-sp13_S_contig763.18846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4754bp|location=Sequence derived from alignment at Ecto-sp13_S_contig763:13885..18638- (Ectocarpus species13 EcNAP12_S_4_19m)
CAATTTTTCCCTCTCCTCTCTCATTCTGTCCCTCTCTGTCCTCTCAACCC
CCGTGCTCCAGCTGAGATCATAGTTCACCGGCCCATCTACTAACAGACCT
CTCTTTCTCATCAACTGTCTCCTCGCTCGGGACCATCATCGGTCGCTCGT
CTTGATCGGCTTCGCGCCGCGGGTCGCAAGGTCGCCGCGTGAGTGCCCGA
GGATGGATAGCGGGAGCGCGGCGAGCAGCTCGTCCTCCGGGGCAATGGTT
TTTCCGGCCAAAGCCTCCTCCGGGGGGGGCGGCGGCACCGACAGCCCCGC
CGCCGTCGCCAGCAGCAGCACAGCGAGCAACAGCAGCAGCGGCAGCGTCA
TCGAGGCATCCCTCTGCGTCACCACGCGTGGCGCGCAAGAACAACAGCGA
CAGCAAGGTCCCGGGAGAGTCTCATCGCCGATTTTGTTGATGGGACACCA
ACAACAACCTCTACCCTATTCGCCGGACGCTCAAGTAATCTCCTTCCCAG
ATCCCTACCCCCACGACGACTCTGACCCGTTGTCCTTCTTCCTGTCCAGT
GGCCGCGGCGATAGCGACCCTCTCGGGTTCGGCTTGGGGTCCGTCGCCGA
CGGTACCTTCGGTGGCCGCAAGGCTACCCCCGAAGAGCTGATGCTCTTCA
GGAGCCACCGCCTGCTCCAGGCGGAGGCCGTCGGAGTGGTCATTGGTCCG
TTGCATTCCTCTAGCGGCGCCGACGCGGCGTACGTGCGCAAGCGCCTAGG
CCTCGTCAGCAGAGCCGTGGAGCGACAGGTGAGGCTGAAGGTGCTCGAGC
AGACCAACGCTGCCGTGGAAGGGGTCCGCGCGCTCGGCGAGGGCGCGCCA
CCGGCCCAGCAGCAGAGCGTCATCAACGCGGAGAGGCGCAACTGCCACCG
CGTACTCTCCGGTGTGCTCGATGAGGGTACGGCTACGTTGAGGGAGCTCT
CGACTACCGGTGGTGGAGGCCTGGGCGGCGTGAACGTAGACATGGGCATG
GGCATGGCATTCCCTCCGTCGGCGCTCGGGTCTCCCGCGACAGAATCGCA
ACAAGTGAGAGAGACGTTCTTCTCAAATTGGTTGCCTTGGGATGCCTGTT
GCAAGCATTCGTCCGAGTATCGTGACATCGTCTGAAGGTCGAGCTTCTTC
GGTGGGCATGTCATGCGTACACCCTGCCTCGTATGCCCGGCTTGAGCGGG
ACAGCAGACTGGTGTGTGCATCGTTTCTAGCGCGAGTTTGTATTGTTATG
GCACGACGCACATCACAGCTTCTCCCCACGCGCGACGCACAGCGAACACC
GTGCTGCACTTTAACTTCGCGAACGTGGCGGTGGGTTGACTCCAACACAC
GGAGTATCCATCTTTGTCACGAATTCGAACATTCGAACGGCAAAGCAGCT
GTTGTCTTGTTTCTTTTTGGTGCTTTCTCAGCGAACTCCGCGTCGATATG
CAGCGATGATTGCAGATAAGAGCTGACTCCCACTACCCTAACACGATATG
AAAGGCTCGTGTGTCGCTCGTTCGTGAGCGAAGCAGCAATTGCTGTTGGA
AGACGTTTGTGCGAAGAAGAAAGTCGGAAATAATTCTTTCCAGCTGCTGC
ATTTCCCTTGGCCATTTATCGAGGTTCTCCTATGCGCAGGGTCGGCGCAC
CGCACCGCCCTTGAGCGTGCAAATCCGTGGTTTAAGTTATTCGTGGGTAA
CGACCCGCTACACCGAATACATCTTCAGTTGTTGGGTAACGCTGCCCCGC
TTTCGTGCTTTGCATGCTGTTGTAGTCCCGCACTTTTTTAATACGGCGAA
CATTGTCCCTCCACGCCAACCACTCGAGCACTTGCCCATCTGGCTCCCCA
AATCTCTATGCTTTTGCTACCCCATCGTGTTTGATCGATTGTTTGCAGCT
GGCTTCTACCTGGGAAGACGCGGCAACTTCCTCGAGCATGAACAGCAGCA
GCAGCAACTCTATTGGCTCGTCATGCCTCACGTCGATGCAGCTACAGCAG
CAGCCGCAGCGGCAACAGCAGCAGCAGCAGCAGTCGATCCTGCACCATAT
GCCTCCCGGAACGGGACGCTCCAGCGTGTTCGCCCTCACGCAGATGCGCG
ACCGCTCTCAACACCACCACTCCCAGCTCGGGATGCCCCTCGGAAGCACC
CGGATGGAAGGCGCGGGGGGTATGAAGCAACAGGGCATGGGATCCAGCTT
TGGTTCTGGGGGCGGCGCGGCGGCACCACCTGGACACAACCACGGAAGGC
TTTCCGACCCCAGCGCGAGGTTCGACGGCGACTCGTGGGGGTCGACGGGA
GGTGGTGCCAGCGTAGGTGGGGGAGGGGGCGGGAAGCGAGCGACGAGCAA
CGTCGGCAAGGTATGTAGGGGGCTAAGGGGTTGCTCGACCCGAGTTTTAC
AATTTATTTTGGAGAGATCGTCATCCAACCGCATGTTGCCAGGCCCTCTT
CGACCGTGAGCAGGAGAGGAATGGAAGAGAAAGCGCAAACCGCATGTTGA
AGTCGTGTCTGTTGACAGCGTGTCTGAACGCTCGTCTGCTGGCCATGACG
TATTGATCGCAAGAACAAACACATTTGCTGTCGATAACGAACGGCCATGC
CCCGATGATGTTCATCTGACAAATAGGATGGTGCTCTGCATGTGGCATTA
GTCGATACGAACACGTCCCCCATCTTCTATCCCGCCTTAATTGAAGTAGG
ATACCCCTTCTCTTTACCCCACAATTCTGGGAGCCCCTAGGTGTGTCCGA
AGTTTCGTCGTTATCGCGAAGTCTAAGGCGGGCAAGGGATAAACCTTGGC
TTGAGTGGGACGACGTCGGATACAAAACTACACGACCGCATTTCTCATCG
TACTCAAGAAAACTGGCATTGGAGACATGAAGCATCGCCTTTCGTTCACA
GTACCCTCAATAGCTTTCTCTGTTTAGCCTCTAAGCCATCTTATGAAAGC
AGCTGTCGTGCTTTACGAGCTACCCCTCCCTCCGTCTCCCTGTTCAGCGG
TGTCCTCACACTCACCCCTACCCCTAACGTGCAGGCCAAGAAGAGATCAG
GACTGCTGAAGAAGACACCTCCCTCCGACGCTCTGACAGACCCCCGCCGG
CCCGTGTACAACAACCGCAAGGGTAGTCGCCACCGCCTCACCCCTCAGGC
GAAGGAGATCTTGGAGGGATGGCTGGCCAAGCACTGGCTGAACCCGTACC
CCACAGAGGAACAGAAGCTCTACCTCGCTCAGAACTGCCACATCACCGTC
ACGCAGGTTTGCTCGTTTTCCTCGTCCCGCCAACAATCAGAAACAACATC
CGGTAGACGCGTAGCACCTTACAGAGGGAAAGAGATAGGGTCAGGGTTAG
GCGGTACGTATCTTCAGTCCACAGCGTTTCACAAGACGTCATATTCTCTG
CACAGTAGCAGCTACGAGAGGGTCGGGTCGAGCCAAAAACACGCTCTAAA
GTCCGGTTTTGTCTTTAAACCGTACGAACAACCCGTTTTTGCTACTGGCA
CCGCATACACGGCACAGGCAAACAACTGGACGATGCGATTCCGCATTTTC
TCTAAACAATGAGTTGGTGTAGAGTATCTCTTCAACCTTAAGCGAGCTGC
TACTTGTACAAGTATACATATACTGGATGATGCGAGTCCGTGCTTTCTCT
TCAGCGGTGTCTTTCCGAACGTAGCCGCTATCTCACCGTGAACGCGACAC
AGGTGAACAACTGGATGATGAACGTCCGCGTTCGTCGCTGCCGCACGAAG
AAGATCGGCCTCGCTACCGGGCCAGAGGAAATCACCTACACGGCCGCGGG
CAAGGCCACCCCTAAGGCCCTCGCCGCGAACCGGGTGGGTGGCAGATCTT
CTTCTTCGTCTTCCATCGCCGCCCCTGCCTCCTCAAGCAAGCAGGAGGGA
GGCGGCGGCGCCAGCGGGGTCGCGGCAGATGCGATGCCACTGTCGAAGAG
GCGAGTGGCGCAGCAGCAACAACAAACAACGATGTTGTAGGGCGTTGAGG
TGAATTGTTGTGGGAACTTATGCGTGGGTGTATGATGCTGTCGCAAAAGT
ACGGTACGTAGATCACACAGCGATGAGTTGGTTTGAAGCTTTTTTTTTTT
TCCTGTCTTAGGTGAACGTTCTCCAAGGACCAAGGATTAAAGAACGGCCG
TGTTTTGATGTAACGATTTCGTTTTTTTGAGGTTAATACCCGCACCAGAC
CGATAAGAAGTAGTTTCTTGATGTTGCTGTGGTTTGTAGTACTGTCGTCT
TAGTCGTTATTTTCATTGTAGTTGTCGTCCACTGCGAAAAACCACTCCGG
ACTCCGCCCAGTGCGTCCTCTTTCAATCTATCCAAGGATCTCACACGCCA
CATGTACATGACCTGCTACACACAGTTCCAAGTCAACCGTTCCACACCTA
CATATTTTGGTAGGTCTGTGAGTTTTCCATGCTGTGCCTGATCCGTTCCC
CGATAGGCGGTGGCAGCAAAGAGCGGCTGCTGGGCTAGCACGTGACGCCC
ACAGGAAACAAATTTGTTCATCTTGGCGGGCAAGCTTGAAGCGCTCCGAG
CAAGCGTGACAGACTAGCGCTGACGTTGTGTGTGTGTCCTATGTACATAG
TGTTCGTCCCATCTGGCGCCAGTCATACGGATCTCTCGATATGTTATACA
TTTCTGAACGTATTAGCCGACGCATGCTCTCCAAAATAATTTCTCGCAGC
GTTAGCGCCAGGGGCGGGGTGGGCGCAGATACGCCGACGAGCACACCTGT
GTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig763:13885..18638-

>mRNA_Ecto-sp13_S_contig763.18846.1 ID=mRNA_Ecto-sp13_S_contig763.18846.1|Name=mRNA_Ecto-sp13_S_contig763.18846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1863bp|location=Sequence derived from alignment at Ecto-sp13_S_contig763:13885..18638- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATAGCGGGAGCGCGGCGAGCAGCTCGTCCTCCGGGGCAATGGTTTT
TCCGGCCAAAGCCTCCTCCGGGGGGGGCGGCGGCACCGACAGCCCCGCCG
CCGTCGCCAGCAGCAGCACAGCGAGCAACAGCAGCAGCGGCAGCGTCATC
GAGGCATCCCTCTGCGTCACCACGCGTGGCGCGCAAGAACAACAGCGACA
GCAAGGTCCCGGGAGAGTCTCATCGCCGATTTTGTTGATGGGACACCAAC
AACAACCTCTACCCTATTCGCCGGACGCTCAAGTAATCTCCTTCCCAGAT
CCCTACCCCCACGACGACTCTGACCCGTTGTCCTTCTTCCTGTCCAGTGG
CCGCGGCGATAGCGACCCTCTCGGGTTCGGCTTGGGGTCCGTCGCCGACG
GTACCTTCGGTGGCCGCAAGGCTACCCCCGAAGAGCTGATGCTCTTCAGG
AGCCACCGCCTGCTCCAGGCGGAGGCCGTCGGAGTGGTCATTGGTCCGTT
GCATTCCTCTAGCGGCGCCGACGCGGCGTACGTGCGCAAGCGCCTAGGCC
TCGTCAGCAGAGCCGTGGAGCGACAGGTGAGGCTGAAGGTGCTCGAGCAG
ACCAACGCTGCCGTGGAAGGGGTCCGCGCGCTCGGCGAGGGCGCGCCACC
GGCCCAGCAGCAGAGCGTCATCAACGCGGAGAGGCGCAACTGCCACCGCG
TACTCTCCGGTGTGCTCGATGAGGGTACGGCTACGTTGAGGGAGCTCTCG
ACTACCGGTGGTGGAGGCCTGGGCGGCGTGAACGTAGACATGGGCATGGG
CATGGCATTCCCTCCGTCGGCGCTCGGGTCTCCCGCGACAGAATCGCAAC
AACTGGCTTCTACCTGGGAAGACGCGGCAACTTCCTCGAGCATGAACAGC
AGCAGCAGCAACTCTATTGGCTCGTCATGCCTCACGTCGATGCAGCTACA
GCAGCAGCCGCAGCGGCAACAGCAGCAGCAGCAGCAGTCGATCCTGCACC
ATATGCCTCCCGGAACGGGACGCTCCAGCGTGTTCGCCCTCACGCAGATG
CGCGACCGCTCTCAACACCACCACTCCCAGCTCGGGATGCCCCTCGGAAG
CACCCGGATGGAAGGCGCGGGGGGTATGAAGCAACAGGGCATGGGATCCA
GCTTTGGTTCTGGGGGCGGCGCGGCGGCACCACCTGGACACAACCACGGA
AGGCTTTCCGACCCCAGCGCGAGGTTCGACGGCGACTCGTGGGGGTCGAC
GGGAGGTGGTGCCAGCGTAGGTGGGGGAGGGGGCGGGAAGCGAGCGACGA
GCAACGTCGGCAAGGCCAAGAAGAGATCAGGACTGCTGAAGAAGACACCT
CCCTCCGACGCTCTGACAGACCCCCGCCGGCCCGTGTACAACAACCGCAA
GGGTAGTCGCCACCGCCTCACCCCTCAGGCGAAGGAGATCTTGGAGGGAT
GGCTGGCCAAGCACTGGCTGAACCCGTACCCCACAGAGGAACAGAAGCTC
TACCTCGCTCAGAACTGCCACATCACCGTCACGCAGGTGAACAACTGGAT
GATGAACGTCCGCGTTCGTCGCTGCCGCACGAAGAAGATCGGCCTCGCTA
CCGGGCCAGAGGAAATCACCTACACGGCCGCGGGCAAGGCCACCCCTAAG
GCCCTCGCCGCGAACCGGGTGGGTGGCAGATCTTCTTCTTCGTCTTCCAT
CGCCGCCCCTGCCTCCTCAAGCAAGCAGGAGGGAGGCGGCGGCGCCAGCG
GGGTCGCGGCAGATGCGATGCCACTCCGACGCATGCTCTCCAAAATAATT
TCTCGCAGCGTTAGCGCCAGGGGCGGGGTGGGCGCAGATACGCCGACGAG
CACACCTGTGTGA
back to top