mRNA_Ecto-sp13_S_contig76285.18843.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76285.18843.1
Unique NamemRNA_Ecto-sp13_S_contig76285.18843.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A7S2SSD0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSD0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.350e-20
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    7 EVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            +VFLPPIGGLT+YI+GDPALIPDE VELTVRVHDECNGSDVFG
Sbjct:  265 KVFLPPIGGLTVYIWGDPALIPDEDVELTVRVHDECNGSDVFG 307
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A482UFG5_9ARCH (GTP_cyclohydro2 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UFG5_9ARCH)

HSP 1 Score: 82.4 bits (202), Expect = 1.820e-19
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            +++FLPPIGG TIY++GDP+ IPDESV LTVRVHDECNGSDVFG
Sbjct:   11 IKLFLPPIGGQTIYMWGDPSTIPDESVPLTVRVHDECNGSDVFG 54
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A8J6CF81_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CF81_DIALT)

HSP 1 Score: 87.4 bits (215), Expect = 6.200e-19
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            +EVFLPPIGG TIYIFGDPA IPDES  LTVRVHDECNGSDVFG
Sbjct:  647 IEVFLPPIGGCTIYIFGDPATIPDESKPLTVRVHDECNGSDVFG 690
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A7S2RF37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RF37_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.310e-18
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            +++FLPPIGGLTIYI+GDP  IPDE +ELT RVHDECNGSDVFG
Sbjct:  102 IKIFLPPIGGLTIYIWGDPDTIPDEDIELTCRVHDECNGSDVFG 145
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A1Z5J8K7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8K7_FISSO)

HSP 1 Score: 86.3 bits (212), Expect = 1.460e-18
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            +++FLPPIGGLTIYI+GDPA IPDE +ELT RVHDECNGSDVFG
Sbjct:  261 IKIFLPPIGGLTIYIWGDPATIPDEDIELTCRVHDECNGSDVFG 304
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: B7FNY5_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNY5_PHATC)

HSP 1 Score: 86.3 bits (212), Expect = 1.480e-18
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            +++FLPPIGGLTIYI+GDPA IPDE +ELT RVHDECNGSDVFG
Sbjct:  279 IKIFLPPIGGLTIYIWGDPATIPDEDIELTCRVHDECNGSDVFG 322
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A6T6EAG3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6EAG3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.690e-18
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            ++VFLPPIGGLT+YI+GDP  IPDE +ELT RVHDECNGSDVFG
Sbjct:   12 IKVFLPPIGGLTVYIWGDPDTIPDEDIELTCRVHDECNGSDVFG 55
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A7S0CFI6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFI6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.840e-18
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            ++VFLPPIGGLTIYI+GDP  IPDE +ELT RVHDECNGSDVFG
Sbjct:   53 IKVFLPPIGGLTIYIWGDPDTIPDEDIELTCRVHDECNGSDVFG 96
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A7S2YEM1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YEM1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.240e-18
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            ++VFLPPIGGLTIYI+GDP  IPDE +ELT RVHDECNGSDVFG
Sbjct:   75 IKVFLPPIGGLTIYIWGDPDTIPDEDIELTCRVHDECNGSDVFG 118
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BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Match: A0A7R9WIM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIM1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.970e-18
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 LEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFG 135
            +++FLPPIGGLTIYI+GDP  IPDE +ELT RVHDECNGSDVFG
Sbjct:  115 IKIFLPPIGGLTIYIWGDPDTIPDEDIELTCRVHDECNGSDVFG 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76285.18843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SSD0_9STRA6.350e-2090.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482UFG5_9ARCH1.820e-1979.55GTP_cyclohydro2 domain-containing protein (Fragmen... [more]
A0A8J6CF81_DIALT6.200e-1988.64Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2RF37_9STRA1.310e-1879.55Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A1Z5J8K7_FISSO1.460e-1881.82Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7FNY5_PHATC1.480e-1881.82Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A6T6EAG3_9STRA1.690e-1879.55Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S0CFI6_9STRA1.840e-1881.82Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2YEM1_9STRA2.240e-1881.82Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9WIM1_9STRA2.970e-1879.55Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76285contigEcto-sp13_S_contig76285:443..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score84.3
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2850.Phatr42619
Model size141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.GTP cyclohydrolase N terminal
EggNOG OGs2XAA3@2836,COG0807@1,KOG1284@2759
Cds size141
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.6790915-CDS-Ecto-sp13_S_contig76285:442..5831681464032.6790915-CDS-Ecto-sp13_S_contig76285:442..583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76285 443..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76285.18843.1prot_Ecto-sp13_S_contig76285.18843.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76285 443..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76285.18843.1

>prot_Ecto-sp13_S_contig76285.18843.1 ID=prot_Ecto-sp13_S_contig76285.18843.1|Name=mRNA_Ecto-sp13_S_contig76285.18843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
LLEVFLPPIGGLTIYIFGDPALIPDESVELTVRVHDECNGSDVFGR*
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mRNA from alignment at Ecto-sp13_S_contig76285:443..583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76285.18843.1 ID=mRNA_Ecto-sp13_S_contig76285.18843.1|Name=mRNA_Ecto-sp13_S_contig76285.18843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76285:443..583+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTCGAGGTCTTCTTGCCCCCGATCGGAGGGCTGACGATCTACATCTT
CGGAGATCCCGCCTTGATTCCGGACGAGAGCGTGGAGCTTACGGTTCGGG
TGCACGACGAGTGTAATGGCTCTGACGTCTTCGGCAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76285:443..583+

>mRNA_Ecto-sp13_S_contig76285.18843.1 ID=mRNA_Ecto-sp13_S_contig76285.18843.1|Name=mRNA_Ecto-sp13_S_contig76285.18843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76285:443..583+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTCGAGGTCTTCTTGCCCCCGATCGGAGGGCTGACGATCTACATCTT
CGGAGATCCCGCCTTGATTCCGGACGAGAGCGTGGAGCTTACGGTTCGGG
TGCACGACGAGTGTAATGGCTCTGACGTCTTCGGCAGGTAG
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