mRNA_Ecto-sp13_S_contig7625.18839.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7625.18839.1
Unique NamemRNA_Ecto-sp13_S_contig7625.18839.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7625.18839.1 vs. uniprot
Match: D8LDZ2_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ2_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.930e-5
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 3 
Query:   39 IGLHLDTCERNARNESAIRRALKRGPAFRARSWAWPI-----PGSTGALVVPSPSGTRSTTLPRVHIYRAEGRQRFAGVMCRHAKK 281
            +G  L   ++N    +A+ R L+RGPAFRARSWAW       P ++G +   S  G R+T    V I+R  G Q F+    R+ KK
Sbjct:  339 VGAALPANKKNPDTSAAVCRLLERGPAFRARSWAWAAESSEAPAASGTVC--SMKGGRATL--DVRIFRPTGNQFFSARFSRYCKK 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7625.18839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDZ2_ECTSI3.930e-538.37Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7625contigEcto-sp13_S_contig7625:3763..4512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size368
Hectar predicted targeting categoryother localisation
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.39032-CDS-Ecto-sp13_S_contig7625:3762..38601681464032.39032-CDS-Ecto-sp13_S_contig7625:3762..3860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7625 3763..3860 -
1681464032.3999681-CDS-Ecto-sp13_S_contig7625:4244..45121681464032.3999681-CDS-Ecto-sp13_S_contig7625:4244..4512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7625 4245..4512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7625.18839.1prot_Ecto-sp13_S_contig7625.18839.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7625 3763..4512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7625.18839.1

>prot_Ecto-sp13_S_contig7625.18839.1 ID=prot_Ecto-sp13_S_contig7625.18839.1|Name=mRNA_Ecto-sp13_S_contig7625.18839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
PFQTTTGESRTALLDYTWTPVKETPGMNRPFAELSSEGRRFVPGLGRGQS
QAPPVRWWSRHPAGRDQRRCHACTSTERRAVSDSPASCAGTRRRVEIFWW
GSERLPRAEGCCNSSWVVHAL*
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mRNA from alignment at Ecto-sp13_S_contig7625:3763..4512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7625.18839.1 ID=mRNA_Ecto-sp13_S_contig7625.18839.1|Name=mRNA_Ecto-sp13_S_contig7625.18839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7625:3763..4512- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTTCCAGACGACTACGGGCGAAAGCCGGACAGCATTATTGGACTACAC
CTGGACACCTGTGAAAGAAACGCCCGGAATGAATCGGCCATTCGCCGAGC
TCTCAAGCGAGGGCCGGCGTTTCGTGCCAGGTCTTGGGCGTGGCCAATCC
CAGGCTCCACCGGTGCGCTGGTGGTCCCGTCACCCAGCGGGACGAGATCA
ACGACGTTGCCACGCGTGCACATCTACCGAGCGGAGGGCCGTCAGCGATT
CGCCGGCGTCATGTGCAGGTAGGGATGGGTTGCACCGATCCCTGTTCGAT
ATGCGACGTTGTCGCACTTACTGCAAGCCGGTCATCTTTTGGGAAGGACG
TCCACCCGACTTCGCGCTCATGCTTTTCGCGTCGGTGCTTTCGTTGCGAC
AACCCGCCGTTGGGGAACGCGTGTGATGTGGTGTGCCGATAGGGATAGAG
GTACAGAGAGATACGGTGATAAAAACTTGCCGTGGTGACGACGCTGTGTA
TGGAGCCAAGACTGGCCTATTCTTAGCACCAGTGTTTGTTCAACACTCGG
TTCGGCACCATCCACTAGCCACGACGCTTGTTTTGGCTGTAGGCGTGCCG
CATGATTGACTCCTCGTCTCCCAACCTTCTCCACCGTTTTCCGATATGTC
AGGCACGCGAAGAAGAGTCGAGATATTTTGGTGGGGCTCGGAGCGCTTGC
CACGCGCTGAAGGGTGCTGCAACAGCAGTTGGGTAGTCCATGCGCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7625:3763..4512-

>mRNA_Ecto-sp13_S_contig7625.18839.1 ID=mRNA_Ecto-sp13_S_contig7625.18839.1|Name=mRNA_Ecto-sp13_S_contig7625.18839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7625:3763..4512- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTTCCAGACGACTACGGGCGAAAGCCGGACAGCATTATTGGACTACAC
CTGGACACCTGTGAAAGAAACGCCCGGAATGAATCGGCCATTCGCCGAGC
TCTCAAGCGAGGGCCGGCGTTTCGTGCCAGGTCTTGGGCGTGGCCAATCC
CAGGCTCCACCGGTGCGCTGGTGGTCCCGTCACCCAGCGGGACGAGATCA
ACGACGTTGCCACGCGTGCACATCTACCGAGCGGAGGGCCGTCAGCGATT
CGCCGGCGTCATGTGCAGGCACGCGAAGAAGAGTCGAGATATTTTGGTGG
GGCTCGGAGCGCTTGCCACGCGCTGAAGGGTGCTGCAACAGCAGTTGGGT
AGTCCATGCGCTTTGA
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