mRNA_Ecto-sp13_S_contig76245.18838.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76245.18838.1
Unique NamemRNA_Ecto-sp13_S_contig76245.18838.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76245.18838.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.250e-19
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 HINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGG 111
            HINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGG
Sbjct:  289 HINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGG 325
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BLAST of mRNA_Ecto-sp13_S_contig76245.18838.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.250e-12
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    4 INPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGG 111
            I+   WQ+LVLDSKFT+CPAGRNP TFRLWEALE G
Sbjct:  230 ISKTAWQELVLDSKFTLCPAGRNPETFRLWEALEAG 265
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BLAST of mRNA_Ecto-sp13_S_contig76245.18838.1 vs. uniprot
Match: A0A2R5G5S0_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.390e-7
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 HINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGG 111
            +I PK++++++LDSKFT+CP G NP  +R++EA E G
Sbjct:  378 YITPKQYREVLLDSKFTLCPMGHNPEAYRIYEACEAG 414
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76245.18838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G273_ECTSI1.250e-19100.00Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2... [more]
D7G272_ECTSI2.250e-1277.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2R5G5S0_9STRA1.390e-751.35UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76245contigEcto-sp13_S_contig76245:198..311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size114
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.3557284-CDS-Ecto-sp13_S_contig76245:197..3111681464032.3557284-CDS-Ecto-sp13_S_contig76245:197..311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76245 198..311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76245.18838.1prot_Ecto-sp13_S_contig76245.18838.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76245 198..311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76245.18838.1

>prot_Ecto-sp13_S_contig76245.18838.1 ID=prot_Ecto-sp13_S_contig76245.18838.1|Name=mRNA_Ecto-sp13_S_contig76245.18838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
HINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGG*
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mRNA from alignment at Ecto-sp13_S_contig76245:198..311-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76245.18838.1 ID=mRNA_Ecto-sp13_S_contig76245.18838.1|Name=mRNA_Ecto-sp13_S_contig76245.18838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76245:198..311- (Ectocarpus species13 EcNAP12_S_4_19m)
CACATCAACCCGAAAGAGTGGCAGGACCTGGTGCTCGACTCGAAGTTTAC
CATTTGTCCGGCGGGGCGCAACCCCGGAACTTTTCGCCTGTGGGAAGCCT
TGGAGGGCGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76245:198..311-

>mRNA_Ecto-sp13_S_contig76245.18838.1 ID=mRNA_Ecto-sp13_S_contig76245.18838.1|Name=mRNA_Ecto-sp13_S_contig76245.18838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76245:198..311- (Ectocarpus species13 EcNAP12_S_4_19m)
CACATCAACCCGAAAGAGTGGCAGGACCTGGTGCTCGACTCGAAGTTTAC
CATTTGTCCGGCGGGGCGCAACCCCGGAACTTTTCGCCTGTGGGAAGCCT
TGGAGGGCGGGTGA
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