mRNA_Ecto-sp13_S_contig7624.18836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7624.18836.1
Unique NamemRNA_Ecto-sp13_S_contig7624.18836.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7624.18836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7624contigEcto-sp13_S_contig7624:3851..4280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size430
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.1827738-UTR-Ecto-sp13_S_contig7624:3850..39161681464032.1827738-UTR-Ecto-sp13_S_contig7624:3850..3916Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7624 3851..3916 +
1681464032.2035322-UTR-Ecto-sp13_S_contig7624:4252..42801681464032.2035322-UTR-Ecto-sp13_S_contig7624:4252..4280Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7624 4253..4280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464032.1932437-CDS-Ecto-sp13_S_contig7624:3916..42521681464032.1932437-CDS-Ecto-sp13_S_contig7624:3916..4252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7624 3917..4252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7624.18836.1prot_Ecto-sp13_S_contig7624.18836.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7624 3917..4252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7624.18836.1

>prot_Ecto-sp13_S_contig7624.18836.1 ID=prot_Ecto-sp13_S_contig7624.18836.1|Name=mRNA_Ecto-sp13_S_contig7624.18836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MGTSCFKTTSRARSDAPVQTKRGIQNAFSSLYMLTSGFHRPTPRRKSMAQ
TFEPCSYLKMDLLWKYSVYLTIHLCIDTIFHRFANRLETLQTFSSASNLT
PVVHPFRMQQM*
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mRNA from alignment at Ecto-sp13_S_contig7624:3851..4280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7624.18836.1 ID=mRNA_Ecto-sp13_S_contig7624.18836.1|Name=mRNA_Ecto-sp13_S_contig7624.18836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=430bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7624:3851..4280+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCGCATCGCGAGCGGTAAATGTAGTGTGATAAAAACAAATTGTGGTT
CTATTTCAAGAATTCCATGGGTACTTCATGCTTCAAAACGACTTCAAGAG
CAAGGAGCGACGCACCAGTACAAACTAAACGCGGCATCCAAAACGCCTTC
AGTTCTCTGTACATGCTTACCTCGGGGTTTCATCGACCTACGCCGCGTCG
GAAAAGCATGGCTCAAACATTCGAACCGTGCTCGTATCTCAAGATGGATC
TACTCTGGAAATATTCCGTATATCTCACTATTCATCTATGCATCGACACA
ATCTTTCATCGTTTTGCCAATCGACTTGAAACATTGCAGACTTTCTCCTC
GGCATCCAACTTAACACCTGTGGTCCATCCCTTCCGCATGCAACAAATGT
GATATCTGGGCAAACTTCTTGCTCGGCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7624:3851..4280+

>mRNA_Ecto-sp13_S_contig7624.18836.1 ID=mRNA_Ecto-sp13_S_contig7624.18836.1|Name=mRNA_Ecto-sp13_S_contig7624.18836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7624:3851..4280+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTACTTCATGCTTCAAAACGACTTCAAGAGCAAGGAGCGACGCACC
AGTACAAACTAAACGCGGCATCCAAAACGCCTTCAGTTCTCTGTACATGC
TTACCTCGGGGTTTCATCGACCTACGCCGCGTCGGAAAAGCATGGCTCAA
ACATTCGAACCGTGCTCGTATCTCAAGATGGATCTACTCTGGAAATATTC
CGTATATCTCACTATTCATCTATGCATCGACACAATCTTTCATCGTTTTG
CCAATCGACTTGAAACATTGCAGACTTTCTCCTCGGCATCCAACTTAACA
CCTGTGGTCCATCCCTTCCGCATGCAACAAATGTGA
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