mRNA_Ecto-sp13_S_contig762.18831.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig762.18831.1
Unique NamemRNA_Ecto-sp13_S_contig762.18831.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: D7FV52_ECTSI (C2H2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV52_ECTSI)

HSP 1 Score: 1347 bits (3486), Expect = 0.000e+0
Identity = 722/754 (95.76%), Postives = 734/754 (97.35%), Query Frame = 3
Query:  759 GLSNNGPMMQPMGGNXXXXXXXGVPGAPIFPPQGGGHGQMVFTTTQRPQPKLPGPHTRTYNILPMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAKLKWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGETMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEEFRRAESTDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQAASDLSTNAMSKADAVEGTNG-GVAEASVGSTDKGETGQNSRRGSGTEFVDARSADRIKQAENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGRTDEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVADPFVRELLLVDDNKPLPNIVADANTPPVVLLPGAMAMGGTLGAMPQGPPPMGAPGFPMMGGGMPMGMGGMMGPMVPGQMGGMGDFPMQMPMPPDAMMGSAGRGFRGRXXXXXXXXXXXXXXFGGRGMGRVDSMPEPTGPRDPRSLVSYVDVDAPKETTPNLDYGDAFPSKSKKKRKTM 3017
            GLSNNGPMMQPMGG XXXXXXX VPGAPIFPPQGGGHGQMVFTTTQRPQPKLPGPHTRTYNILPMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPK+AESTR AKLKWV+KESAVFGEQLRANPRLF+ASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGET PQ DDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQI+EEAP+HERIVCSDAANTRNDDFARSAYI+YDTPEKATKAVQQLNKMRIYQNS+PKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDH+FSTANRVAHD KQSLKVAKALDEEFRRAESTDGITALLAEPEVQAAL SSSSGAAQLDLVCAYMKRVYFYVYYRGQ+ RDEGDMIASRGAGRGVPAASKEEIQ        AMSKADAVEGTNG GVAEASVGSTDKGETGQ SRRGSGTEFVDARSADRIKQAENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGRTDEGYARC+MPNCGKLFKAPEFVHKHLVNKHP+KYKLVLDQVADPFVRELL+ DDNKPLPNIVADANTPPVVLLPGAMAMGGTLG MPQGPPPMGAPGFPMMGGGMPMGMGGMMGPMVPGQMGGMGDFPMQMPMPPDAMMGSAGRGFRGRXXXXXXXXXXXXXXFGGRGMGRVDSMPEPTGPRDPRSLVSYVDVDAPKETTPNLDYGDAFPSKSKKKRKTM
Sbjct:   99 GLSNNGPMMQPMGGXXXXXXXXXVPGAPIFPPQGGGHGQMVFTTTQRPQPKLPGPHTRTYNILPMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKRAESTRYAKLKWVDKESAVFGEQLRANPRLFVASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGETTPQ-DDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIVEEAPQHERIVCSDAANTRNDDFARSAYIVYDTPEKATKAVQQLNKMRIYQNSRPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDHDFSTANRVAHDSKQSLKVAKALDEEFRRAESTDGITALLAEPEVQAALASSSSGAAQLDLVCAYMKRVYFYVYYRGQECRDEGDMIASRGAGRGVPAASKEEIQ-------EAMSKADAVEGTNGNGVAEASVGSTDKGETGQTSRRGSGTEFVDARSADRIKQAENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGRTDEGYARCLMPNCGKLFKAPEFVHKHLVNKHPEKYKLVLDQVADPFVRELLMADDNKPLPNIVADANTPPVVLLPGAMAMGGTLGGMPQGPPPMGAPGFPMMGGGMPMGMGGMMGPMVPGQMGGMGDFPMQMPMPPDAMMGSAGRGFRGRXXXXXXXXXXXXXXFGGRGMGRVDSMPEPTGPRDPRSLVSYVDVDAPKETTPNLDYGDAFPSKSKKKRKTM 844          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: A0A6H5KYR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR2_9PHAE)

HSP 1 Score: 1145 bits (2962), Expect = 0.000e+0
Identity = 617/672 (91.82%), Postives = 630/672 (93.75%), Query Frame = 3
Query:  759 GLSNNGPMMQPMGGNXXXXXXXGVPGAPIFPPQGGGHGQMVFTTTQRPQPKLPGPHTRTYNILPMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAKLKWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGETMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEEFRRAESTDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQAASDLSTNAMSKADAVEGTNG-GVAEASVGSTDKGETGQNSRRGSGTEFVDARSADRIKQAENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGRTDEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVADPFVRELLLVDDNKPLPNIVADANTPPVVLLPGAMAMGGTLGAMPQGPPPMGAPGFPMMGGGMPMGMGGMMGPMVPGQMGGMGDFPMQMPMPPDAM 2771
            G SNNGPMMQPMGGN XXXXXX VPGAP+FPPQG GHGQMVFTTTQRPQPKLPGPHTRTYNILPMISFKAFMAEQRDDVTPEEC QRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAK KWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEED+DQPGETMPQ DDKDDGDADYDVDAK+ISAHSDKVAFIRRIPAWVSTDELGRQIIEEAP+HERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDH+FSTANR+AHD KQSLKVAKALDEEFRRAESTDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQ RDEGDMIASRGAGRGVPAASKEEIQAAS     AMSKADAVEGTNG GV EASVGSTDKGETGQ SRRGSGT+ VDARSADRIKQA+NAEETRKKDQAFVERYDERVKA V    A + G               +LFKAPEFVHKHLVNKHP+KYKLVLDQVADPFVRELL+ DDNKPLPNIVADANTPPVVLLPGAMAMGGTLGAMPQGPPPMGAPGFPMMGGGMPMGMGGMMGPMVPGQMGGMGDFPMQMPMPP A+
Sbjct:   99 GPSNNGPMMQPMGGNLXXXXXXXVPGAPMFPPQGAGHGQMVFTTTQRPQPKLPGPHTRTYNILPMISFKAFMAEQRDDVTPEECNQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAKQKWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDVDQPGETMPQ-DDKDDGDADYDVDAKEISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPQHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDHDFSTANRIAHDTKQSLKVAKALDEEFRRAESTDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQCRDEGDMIASRGAGRGVPAASKEEIQAASQA--KAMSKADAVEGTNGNGVVEASVGSTDKGETGQTSRRGSGTDSVDARSADRIKQAKNAEETRKKDQAFVERYDERVKA-VRSIPAFSVGLMHS-----------ELFKAPEFVHKHLVNKHPEKYKLVLDQVADPFVRELLMADDNKPLPNIVADANTPPVVLLPGAMAMGGTLGAMPQGPPPMGAPGFPMMGGGMPMGMGGMMGPMVPGQMGGMGDFPMQMPMPPGAV 755          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: A0A4D9DCQ9_9STRA (C2H2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCQ9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.740e-38
Identity = 159/557 (28.55%), Postives = 256/557 (45.96%), Query Frame = 3
Query:  927 TRTYNILPMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHP-KKAESTRNAKLKWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKR--------PRNSSREDASVDAMEEDLDQPGE-----TMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDG--RYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEEFRRAESTDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQAASDLSTNAMSKADAVEGTNGGVAEASVGSTDKGETGQNSRRGSGTEFVDARSADRIKQAENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGRTDEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVADPFVRELLLVDDNKPLPNIVAD 2549
            T    + P+ SF+ FM EQ D+ + EE  QRY EYK  Y++  +    +    EEWFLERY P  + E    AK +W   E++ F  QL   P LFI SASL+P  E + +  + KR  +        P +++ E+A    + E ++  G+     T      ++   A   +DAK +  H+D   ++R  P+ V    L + + E      R + SD A +   +  RSA+++Y T E+A  A Q L+        + + +  ++       R F L++ ++  +    V  + S    +  D  Q+  +A+ALD E  R    +G+ A+L+ P V+A L   +    +LD+V AY++RV+F V+Y G +++DEGD++ S       P   K                ++  E ++G V E+ V S++             T+ +D +    +   +     +  D+    + D   KA+  KW A N    DEG  RC    C KLFK+ EF+ KHL+ KH    +  L  V    VR     D  KPLP +  D
Sbjct:  298 TSAAGMPPIQSFQKFMLEQTDEPSAEESLQRYAEYKFKYIEDYSKMVFEEKKSEEWFLERYLPCARQEKEVVAKREWARAEASRFSRQLLQQPDLFIVSASLEPNMELE-YHALVKRYAKSGAARSHLPLSAAAENAVESKVAEGVNGEGDSGHGTTESAGRSEEAAGAGIGLDAKGLEGHADATLYVRPFPSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPLPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDRE--RGLDGEGLEAVLSAPAVKAELERRNLSF-RLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFS------APQLYKR---------VEPFKPSEKDEKSSGNVDESGVISSEW------------TKSMDGKVCKLLAAVQEGSRLKGLDEEAQTQRDAEEKAK-QKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVD 821          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: M4C0K2_HYAAE (C2H2-type domain-containing protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0K2_HYAAE)

HSP 1 Score: 148 bits (373), Expect = 8.770e-33
Identity = 156/547 (28.52%), Postives = 247/547 (45.16%), Query Frame = 3
Query:  948 PMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAKLKWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGETMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEE-FRRAE---STDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEI---QAASDLSTNAMSKAD---AVEGTNGGVAEASVGSTDKGE---TGQNSRR-GSGTEFVDARSADRIKQA--ENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGR--TDEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVADPFVRELLLVDDNKPLP 2534
            P++S+K ++  Q D+++PE  +QRY+EYK  +VQR+  +F D H +EEW  ERY P         K+     E+  FGE++R+          LD     +  G           +S ED + D                               ++SA   +V ++RR+P       L   I +       +  SD       DF RSAYIIY++   A+ A+ +++   +            + S     F L+V  ++ R+        S   R+  D KQSL +AKALD   F  AE   +  GI ALLA  EV   L +     A+LD+V AY++RV+ Y+YY G Q  D GD++ +  A    P+ S  +I   +A  + +T   SK++   A E       +A  G   +     TG+ ++  G     +D +    +K+   E  E  R K++A V+  + R +A +    A N G   +D+G  RC +  C KLFKA +FV KH+ NKHP+     + +V + ++ E    D+  P+P
Sbjct:  101 PLVSYKVWIMRQTDELSPEVYQQRYEEYKKKHVQRVLRAFFDQHKREEWLQERYSPALRHRVETQKMMQQMNEAKQFGERVRSG----TTKICLDEQQAAENSG-----------TSAEDFANDM------------------------------ELSA---RVLYLRRVPCACPVGTLSETIKKAGGPFVHLYLSDPVKKSAFDFDRSAYIIYESAAAASDAMPKIHNTFV------------EDSNQFPPFRLQVSPHRARAPLKTPSYLSVPERLTADYKQSLALAKALDLRLFHGAEDKLARFGIEALLASEEVAPNLLTDK---AKLDVVIAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPSPSARDIDEEKARQEAATAGASKSEEDAATEKNXXXATKAEAGERKESSASMTGETAKAIGGWAAALDEKVQAYLKELAPEVVEAKRAKNRALVDEIEAREEAALESTYA-NYGEKASDDGKHRCRL--CTKLFKAMDFVKKHIRNKHPELAVDKIAEVGESYMWEQYREDEQHPMP 581          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: A0A3M6V866_9STRA (C2H2-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V866_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.160e-32
Identity = 164/561 (29.23%), Postives = 249/561 (44.39%), Query Frame = 3
Query:  948 PMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAKLKWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVD----AMEEDLDQPGETMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYF---ELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEE-FRRAE---STDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQAASDLSTNAMSKA-------------DAVEGTNGGVAEASVGSTDKGETGQNSRR-GSGTEFVDARSADRIKQA--ENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGR--TDEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVAD---PFVRELLLVDDNKPLP 2534
            P++S+K +M  Q D+ +PE  +QRY+EYK  +VQR+  +F +VH +EEW  ERY P         K      E+  F E+LR       A   LD                       E  S+D    +M ED                        A D+  HS +V ++RR+P       L   I +       +  SD A     DF RSAYIIY++   A+ A+ +++   +                DG  F    L+V  ++ R+        S   R+A D KQSL +AKALD   F  A+   +  G+ ALL   EV     S S+   +LD+V AY++RV+ Y+YY G Q  D GD++ +  A    P  S  +I+        A++ A             D    T     ++SV +T    TG+ ++  G     +D +    +K+   E  E  R K++A V+  + R +A +    A N G   +D+G  RC +  C KLFKA +FV KH+ NKHP+   LV+D+VA+    ++ E    D++ P+P
Sbjct:   99 PLVSYKIWMMRQTDESSPEVYQQRYEEYKKKHVQRVLRAFFEVHKREEWMQERYSPALRYRVEKHKTTQQISEAQQFHERLRTG----TAKICLD-----------------------EQISIDNGGTSMVEDF-----------------------ANDLE-HSARVLYVRRVPCACPVGTLSETIKKAGGPFVHLYLSDPAKKSAFDFDRSAYIIYESAAAASDAISKIHNTFVE---------------DGNQFPPFRLQVSPHRARAPLKTPSYLSVPERLAADYKQSLALAKALDARLFHNAKEKLARFGVEALLISEEVA---QSYSTDKEKLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDIEEEKARQEAAVTSAAISADDVPIEENKDNAANTETREKDSSVSAT----TGETAKAIGGWASALDEKVQAYLKELAPEVVEAKRAKNRALVDEVEAREEAALESTYA-NYGEKASDDGKHRCRL--CTKLFKAMDFVKKHIRNKHPE---LVVDKVAEVGESYMWEQYREDEHHPMP 580          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: A0A0P1AZ84_PLAHL (Serrate rna effector molecule n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZ84_PLAHL)

HSP 1 Score: 142 bits (357), Expect = 1.460e-30
Identity = 148/542 (27.31%), Postives = 244/542 (45.02%), Query Frame = 3
Query:  942 ILPMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAKLKWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGETMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEEF--RRAESTD--GITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQAASDLSTNAMSKADAVEGTNGGVAEASVGSTDKGETGQNSRRGSGTEFVDARSADRIKQAENAE--ETRKKDQAFVERYDERVKAEVTKWQAMNTGR--TDEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVAD---PFVRELLLVDDNKPLP 2534
            + P+IS+K +M +Q D++TPE  +QRY+EYK  ++QR+  +F D+H +EEW  ERY P         K      E+  F E++ +     +A+   D ++  +   GM K                                        D+  D +D    S ++ +IRR+P       L   I +    +  +  SD       DF RSAYI+YD+P  A++A+ +L+   +  N++               F L+V  ++ R+        S   R+  D+ Q+L++A+ALD        E  D  GI ALL+  +V   L    S   QLDLV AY++RV+ Y+YY G Q RD GD++ +  A    P  S  +++          ++ +  E  N          T +G              +D + +  +K+ E  E    R K++A V+  + R +  +    A N G   +++G  RC +  C KLFKA +FV KH+ NKHP+   LV+D++A+    ++ E    D+ +P+P
Sbjct:  268 LEPLISYKVWMMQQTDELTPEGYQQRYEEYKKKHIQRVLRAFFDLHKREEWLQERYSPALRARVEKIKTTHQMNEAKHFKERILSG----VATICFDEMTANE---GMTKA--------------------------------------TDFVNDVED----SARILYIRRVPCACPIGTLSEAIKKAGGPYLHLYLSDPVKKSAFDFDRSAYILYDSPTTASEAMPKLHNTFVEDNTQFPP------------FRLQVSPHRARAPLKTPSYLSVPTRIEVDLTQALRLAQALDTRLFELNQEKCDQVGIHALLSLEQV---LVKYPSAKEQLDLVIAYLRRVHHYIYYAGVQCRDMGDILHAHPALFCRPPPSLRDLE-------EEKTRHEENERLNDENGSQEPRQTIRGWAAA----------LDEKVSMYLKELEPEELQAKRVKERALVDEIETREEIALESTYA-NYGEKASEDGKHRCRL--CTKLFKALDFVKKHIRNKHPE---LVVDKIAEVGESYMWEQYRQDEQRPMP 722          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: A0A3R7J2W7_9STRA (C2H2-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J2W7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 9.200e-29
Identity = 167/596 (28.02%), Postives = 263/596 (44.13%), Query Frame = 3
Query:  930 RTYNILP--MISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAKLKWVEKESAVFGEQLRANPRLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGETMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEE-FRRAEST---DGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGA--GRGVPAA-------SKEEIQAAS-----DLSTNAMSKADAVEGTNGGVAEASVGSTDKGETGQNSRRGSGTEFVDARSADRIKQA--ENAEETRKKDQAFVERYDERVKAEV-TKWQAMNTGRTDEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVAD---PFVRELLLVDDNKPLPNIVADANTPPVVLLPGAMAMGGTLGAMPQGPPPMG 2639
            R  + LP  + ++K +M  Q D+ +PE  +QRY+EYK  +VQR+  +F ++H +EEW  ERY P         K      E+  FGE++R+      A   LD                                           +Q   +DG      D  +   +S +V ++RR+P    T  L   I +       +  SD       DF RSAYIIY++   A+ A+ +++   +            + S     F L+V  ++ R+        S   R+  D +Q+  +AKALD   F  AE+     GI ALLA  EV     S S+   +LD+V AY++RV+ Y+YY G Q  D GD++ +  A   R  P+A       +++E  AA+     D +    +K DA   T G   E  V S    E  ++   G     +D +    +K+   E  E  R K++A V   + R +A + + +       +D+G  RC +  C KLFKA +FV KH+ NKHP+   LV+D++A+    ++ E    D+  P+P + A+ + P   +L G    GG  G   +G P  G
Sbjct:   85 RPTSTLPEALATYKVWMMRQSDEASPEVYQQRYEEYKKKHVQRVLRAFFEIHKREEWLQERYSPALRHRLEKMKTAQQMNEANHFGERVRSG----TAKICLD-------------------------------------------EQPPAEDGANPLGEDFANDQENSARVLYVRRVPCACPTATLSETIKKAGGPFVHLYLSDPVKKSAFDFDRSAYIIYESAATASDAMPKIHNTFV------------EDSNLFPPFRLQVSPHRARAPLKTPSYLSVPERLVVDYEQASALAKALDARLFHGAEAKLARFGIEALLACEEVT---QSYSTDKQKLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDLEEEKARQEAAAANSVKPEDENVKDENKDDAA-ATEG---EEPVTSAPTAEAAKSI--GGWAAALDEKVQTYLKELTPEVVEAKRAKNRALVTEIEAREEAALESTYSNYGEKASDDGKHRCRL--CTKLFKAMDFVKKHIRNKHPE---LVVDKIAEVGESYMWEQYREDEQHPMPPLEANNSAPGGAVLGGRGGNGGRNGGGYRGRPDRG 607          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: H3GEF9_PHYRM (C2H2-type domain-containing protein n=25 Tax=Phytophthora TaxID=4783 RepID=H3GEF9_PHYRM)

HSP 1 Score: 127 bits (319), Expect = 3.560e-26
Identity = 151/579 (26.08%), Postives = 244/579 (42.14%), Query Frame = 3
Query:  948 PMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQRLTHSFIDVHCKEEWFLERYHPKKAESTRNAKLKWVEKESAVFGEQLRANPRLFIASASLD---PISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGETMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGDGRYF---ELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEE-FRRAE---STDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQAASDLSTNAMSKADAVEGTNGGVAEASVGSTDKGE-------TGQNSRR-GSGTEFVDARSADRIKQA--ENAEETRKKDQAFVERYDERVKAEV-TKWQAMNTGRTDEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVAD---PFVRELLLVDDNKPLPNIVADANTPPVVLLPGAMAMGGTLGA 2612
            P++S+K +M  Q D+++PE  +QRY+EYK  +VQR+  +F ++H +EEW  ERY P         K      E+  FGE++RA      A   LD   P+                         V+ + ED                        A D+  +S++V ++RR+P       L   I +       +  SD       DF RSAYIIY++   A+ A+ +++   +                DG  F    L+V  ++ R+        S   R+  D KQ+ ++AKALD   F  AE   +  GI ALL   EV     + S+   +LD+V AY++RV+ Y+YY G Q  D GD++ +  A    P  S  +++                                          TG+  +  G     +D R    +++   E     R K++A V+  + R +A + + +       +D+G  RC +  C KLFKA +FV KH+ NKHP+   LV+D++A+    ++ E    D+  P+P +    N      +PG   +GG  G+
Sbjct:  104 PLVSYKVWMMRQTDELSPEVYQQRYEEYKKKHVQRVLRAFFELHKREEWLQERYSPALRHRVDKHKTSQQMNEAKQFGERVRAG----TAKICLDEQPPVEN----------------------GVNPLGEDF-----------------------ANDLE-NSERVLYVRRVPCACPVGTLSETIKKAGGPFVHMYLSDPVKKSAFDFDRSAYIIYESAAAASDAMPKIHNTFVE---------------DGNQFPPFRLQVSPHRARAPLKTPSYLSVPERLTSDYKQATELAKALDARLFHGAEDKLARFGIEALLTSEEVT---QNYSTDKQKLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGEPVKAIGGWAAALDGRVQAYLEELTPEVVGAKRAKNRALVDEIETREEAALESTYSNYGEKASDDGKHRCRL--CTKLFKAMDFVKKHIRNKHPE---LVVDKIAEVGESYMWEQYREDEQHPMPPLETSNN------MPGGAVLGGRAGS 603          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: A0A2D4C276_PYTIN (C2H2-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C276_PYTIN)

HSP 1 Score: 121 bits (304), Expect = 2.220e-24
Identity = 117/390 (30.00%), Postives = 184/390 (47.18%), Query Frame = 3
Query: 1392 DYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGD-GRYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEEFRRAE---STDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQ--AASDLSTNAMSKADAVEGTNGGVAEASVGSTDKGETGQNSRRGSGTEFVDARSADRIKQAENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGRT-DEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVADPFVRELLLVDDNKPLPNI 2540
            DYD D +D    S ++ ++RRIP       L   I +     + I  SD       DF RSAYIIY+TPE A +A+ +++   +             Q  D    F L+V  ++ R+        S + R++ D+KQ+L +A  LD+     E   +  GI ALL   ++ AA  +  S   +LD+V AY++RV+ ++YY G Q  D GD++ +  A    PAA+ ++I+   A   S  A      V+ + GG A A            + +  S  E +DA         E  +E   K +A VE  + R +A +    +    +  D+G  RC +  C KLFKA +FV KH+ NKHP+     + +V + ++ E    D N+PLP +
Sbjct:  244 DYDNDLED----SKRILYVRRIPCACPVTTLSEAIKKAGGNFQEIYLSDPVKKSAFDFDRSAYIIYETPEAAEEALPKIHNTFV-------------QDADLFPPFRLQVSQHRSRAPLKTPSSMSLSERISFDLKQALTLATRLDKTLYTKEQDLNACGIEALLEHQDIAAAYATEKS---KLDVVIAYLRRVHHFIYYAGVQCIDMGDIMHAHPALFSRPAATPKDIEDDKARKESIGAADDPTEVKASTGGWAAA-----------XDEKVQSYIEELDA---------EKVQEKMDKQKALVEEVEAREEAALESTYSNYAEKAGDDGKHRCRL--CTKLFKALDFVKKHIRNKHPELAVDKIAEVGESYMWEQYREDTNRPLPPV 591          
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Match: A0A2D4BMN0_PYTIN (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMN0_PYTIN)

HSP 1 Score: 121 bits (304), Expect = 4.470e-24
Identity = 116/392 (29.59%), Postives = 184/392 (46.94%), Query Frame = 3
Query: 1392 DYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIEEAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQNSKPKTKIAKKQSGD-GRYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQSLKVAKALDEEFRRAE---STDGITALLAEPEVQAALTSSSSGAAQLDLVCAYMKRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQ--AASDLSTNAMSKADAVEGTNGGVAEASVGSTDKGETGQNSRRGSGTEFVDARSADRIKQ--AENAEETRKKDQAFVERYDERVKAEVTKWQAMNTGRT-DEGYARCVMPNCGKLFKAPEFVHKHLVNKHPDKYKLVLDQVADPFVRELLLVDDNKPLPNI 2540
            DYD D +D    S ++ ++RRIP       L   I +     + I  SD       DF RSAYIIY+TPE A +A+ +++   +             Q  D    F L+V  ++ R+        S + R++ D+KQ+L +A  LD+     E   +  GI ALL   ++ AA  +  S   +LD+V AY++RV+ ++YY G Q  D GD++ +  A    PAA+ ++I+   A   S  A      V+ + GG A A                      +D +    I++  AE  +E   K +A VE  + R +A +    +    +  D+G  RC +  C KLFKA +FV KH+ NKHP+     + +V + ++ E    D N+PLP +
Sbjct:  611 DYDNDLED----SKRILYVRRIPCACPVTTLSEAIKKAGGNFQEIYLSDPVKKSAFDFDRSAYIIYETPEAAEEALPKIHNTFV-------------QDADLFPPFRLQVSQHRSRAPLKTPSSMSLSERISFDLKQALTLATRLDKTLYTKEQDLNACGIEALLEHQDIAAAYATEKS---KLDVVIAYLRRVHHFIYYAGVQCIDMGDIMHAHPALFSRPAATPKDIEDDKARKESIGAADDPTEVKASTGGWAAA----------------------LDEKVQSYIEELDAEKVQEKMDKQKALVEEVEAREEAALESTYSNYAEKAGDDGKHRCRL--CTKLFKALDFVKKHIRNKHPELAVDKIAEVGESYMWEQYREDTNRPLPPV 958          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig762.18831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV52_ECTSI0.000e+095.76C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KYR2_9PHAE0.000e+091.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DCQ9_9STRA8.740e-3828.55C2H2-type domain-containing protein n=1 Tax=Nannoc... [more]
M4C0K2_HYAAE8.770e-3328.52C2H2-type domain-containing protein n=2 Tax=Hyalop... [more]
A0A3M6V866_9STRA1.160e-3229.23C2H2-type domain-containing protein n=2 Tax=Perono... [more]
A0A0P1AZ84_PLAHL1.460e-3027.31Serrate rna effector molecule n=1 Tax=Plasmopara h... [more]
A0A3R7J2W7_9STRA9.200e-2928.02C2H2-type domain-containing protein n=3 Tax=Phytop... [more]
H3GEF9_PHYRM3.560e-2626.08C2H2-type domain-containing protein n=25 Tax=Phyto... [more]
A0A2D4C276_PYTIN2.220e-2430.00C2H2-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A2D4BMN0_PYTIN4.470e-2429.59Rab-GAP TBC domain-containing protein n=1 Tax=Pyth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig762contigEcto-sp13_S_contig762:7533..19148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1354.0
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FV52
Preferred nameSRRT
Model size3859
KEGG koko:K15196
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006325,GO:0006342,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008283,GO:0008380,GO:0009058,GO:0009059,GO:0009301,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010720,GO:0014070,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0022008,GO:0030154,GO:0030422,GO:0031047,GO:0031048,GO:0031050,GO:0031053,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033168,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036404,GO:0040029,GO:0042221,GO:0042742,GO:0042795,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0043900,GO:0043901,GO:0043903,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045069,GO:0045071,GO:0045595,GO:0045597,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046685,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050829,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097150,GO:0097159,GO:0097659,GO:0098542,GO:0098727,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902679,GO:1903506,GO:1903507,GO:1903900,GO:1903901,GO:1990477,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons18
EggNOG free text desc.primary miRNA processing
EggNOG OGsKOG2295@1,KOG2295@2759
Ec32 ortholog descriptionC2H2 zinc-finger protein
Ec32 orthologEc-12_007510.1
Cds size3018
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig762.18831.1prot_Ecto-sp13_S_contig762.18831.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig762 7535..18309 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464031.7330198-UTR-Ecto-sp13_S_contig762:7532..75341681464031.7330198-UTR-Ecto-sp13_S_contig762:7532..7534Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig762 7533..7534 +
1681464031.9888108-UTR-Ecto-sp13_S_contig762:18309..191481681464031.9888108-UTR-Ecto-sp13_S_contig762:18309..19148Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig762 18310..19148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464031.7471948-CDS-Ecto-sp13_S_contig762:7534..77291681464031.7471948-CDS-Ecto-sp13_S_contig762:7534..7729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 7535..7729 +
1681464031.758025-CDS-Ecto-sp13_S_contig762:7931..80441681464031.758025-CDS-Ecto-sp13_S_contig762:7931..8044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 7932..8044 +
1681464031.7688293-CDS-Ecto-sp13_S_contig762:11053..114311681464031.7688293-CDS-Ecto-sp13_S_contig762:11053..11431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 11054..11431 +
1681464031.779857-CDS-Ecto-sp13_S_contig762:11722..117931681464031.779857-CDS-Ecto-sp13_S_contig762:11722..11793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 11723..11793 +
1681464031.7910087-CDS-Ecto-sp13_S_contig762:12041..122471681464031.7910087-CDS-Ecto-sp13_S_contig762:12041..12247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 12042..12247 +
1681464031.801853-CDS-Ecto-sp13_S_contig762:12445..125681681464031.801853-CDS-Ecto-sp13_S_contig762:12445..12568Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 12446..12568 +
1681464031.8127806-CDS-Ecto-sp13_S_contig762:12717..128731681464031.8127806-CDS-Ecto-sp13_S_contig762:12717..12873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 12718..12873 +
1681464031.827707-CDS-Ecto-sp13_S_contig762:13161..132811681464031.827707-CDS-Ecto-sp13_S_contig762:13161..13281Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 13162..13281 +
1681464031.8477938-CDS-Ecto-sp13_S_contig762:13413..135421681464031.8477938-CDS-Ecto-sp13_S_contig762:13413..13542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 13414..13542 +
1681464031.8606465-CDS-Ecto-sp13_S_contig762:14077..142491681464031.8606465-CDS-Ecto-sp13_S_contig762:14077..14249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 14078..14249 +
1681464031.8715312-CDS-Ecto-sp13_S_contig762:14497..147181681464031.8715312-CDS-Ecto-sp13_S_contig762:14497..14718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 14498..14718 +
1681464031.8891647-CDS-Ecto-sp13_S_contig762:15122..153291681464031.8891647-CDS-Ecto-sp13_S_contig762:15122..15329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 15123..15329 +
1681464031.914728-CDS-Ecto-sp13_S_contig762:15732..159571681464031.914728-CDS-Ecto-sp13_S_contig762:15732..15957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 15733..15957 +
1681464031.925364-CDS-Ecto-sp13_S_contig762:16246..163271681464031.925364-CDS-Ecto-sp13_S_contig762:16246..16327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 16247..16327 +
1681464031.935937-CDS-Ecto-sp13_S_contig762:16778..168561681464031.935937-CDS-Ecto-sp13_S_contig762:16778..16856Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 16779..16856 +
1681464031.9462805-CDS-Ecto-sp13_S_contig762:17119..174051681464031.9462805-CDS-Ecto-sp13_S_contig762:17119..17405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 17120..17405 +
1681464031.9568503-CDS-Ecto-sp13_S_contig762:17658..178431681464031.9568503-CDS-Ecto-sp13_S_contig762:17658..17843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 17659..17843 +
1681464031.9743505-CDS-Ecto-sp13_S_contig762:18237..183091681464031.9743505-CDS-Ecto-sp13_S_contig762:18237..18309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig762 18238..18309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig762.18831.1

>prot_Ecto-sp13_S_contig762.18831.1 ID=prot_Ecto-sp13_S_contig762.18831.1|Name=mRNA_Ecto-sp13_S_contig762.18831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1006bp
MGESKADVQSEVVVDSHEQQTTAAAAAAVSATAADGDDIPGVPATLDAAE
GTNGVAAGDETVVDEVIDAADDFGGSRVVGREGSENGHDDEPPSRRGRRG
RSRSRSRSRSRDRAGGGMNGDSSRDRGRRRDGDRDREHDRSRGRDRDPIG
RDNRERGRDDSRDRNRGSDAARDRDRGREHSRERDRGRGSSRDRDWGRDE
RDRTRGRDRDSFDNTRDRARQSGGHGQGRRDRGQTALMDGGRAGGRDPFR
GRGLSNNGPMMQPMGGNLPMMQPMGVPGAPIFPPQGGGHGQMVFTTTQRP
QPKLPGPHTRTYNILPMISFKAFMAEQRDDVTPEECKQRYDEYKADYVQR
LTHSFIDVHCKEEWFLERYHPKKAESTRNAKLKWVEKESAVFGEQLRANP
RLFIASASLDPISEEQRWGGMDKRKKRPRNSSREDASVDAMEEDLDQPGE
TMPQQDDKDDGDADYDVDAKDISAHSDKVAFIRRIPAWVSTDELGRQIIE
EAPKHERIVCSDAANTRNDDFARSAYIIYDTPEKATKAVQQLNKMRIYQN
SKPKTKIAKKQSGDGRYFELKVFSYQPRSQNSVDHEFSTANRVAHDIKQS
LKVAKALDEEFRRAESTDGITALLAEPEVQAALTSSSSGAAQLDLVCAYM
KRVYFYVYYRGQQYRDEGDMIASRGAGRGVPAASKEEIQAASDLSTNAMS
KADAVEGTNGGVAEASVGSTDKGETGQNSRRGSGTEFVDARSADRIKQAE
NAEETRKKDQAFVERYDERVKAEVTKWQAMNTGRTDEGYARCVMPNCGKL
FKAPEFVHKHLVNKHPDKYKLVLDQVADPFVRELLLVDDNKPLPNIVADA
NTPPVVLLPGAMAMGGTLGAMPQGPPPMGAPGFPMMGGGMPMGMGGMMGP
MVPGQMGGMGDFPMQMPMPPDAMMGSAGRGFRGRGGGGFRGRGGPGGRFG
GRGMGRVDSMPEPTGPRDPRSLVSYVDVDAPKETTPNLDYGDAFPSKSKK
KRKTM*
back to top

mRNA from alignment at Ecto-sp13_S_contig762:7533..19148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig762.18831.1 ID=mRNA_Ecto-sp13_S_contig762.18831.1|Name=mRNA_Ecto-sp13_S_contig762.18831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=11616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig762:7533..19148+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACATGGGCGAGTCGAAGGCAGACGTTCAGTCCGAGGTGGTGGTAGACTCA CACGAACAGCAGACGACCGCAGCAGCAGCTGCAGCAGTATCAGCAACAGC CGCCGATGGCGACGACATACCTGGAGTACCGGCGACGCTGGATGCAGCAG AGGGAACCAATGGCGTCGCGGCTGGTGATGAGACTGTTGTGGATGAGGTG AGCTTGCCCTCCTGTACAGATTCCACGTCAAGTCAGCAAACGTCCGGCGC GCGGGGCGGGATGAACGGCGGTCACAGGTCAAAACGCAAACGGATACGCG GTGGTATAGTCCATGTACCCCCATCGGCGCCTTACGGCTTTACCCACCTA CTACATTGTACTTGCTTCTTGTTGCTGGTGGTCGGCATGGTTTGATTAGG TGATCGATGCTGCAGACGACTTTGGCGGCAGCAGGGTCGTCGGGCGCGAA GGTAGCGAAAACGGCCACGACGACGAGCCCCCGAGCAGACGGGGCAGGCG AGGGAGAAGCAGGTGAGGCTTCTGCTGTTGCACAACGGATACAGACTCAG TTTTTTCCTGGAGCCTTTCCCTGTTTCTCTCCGGCTCATCGACACTACCA GTGTTTCTCTCATCTTCGCGAGGTATTGCTGAAATGCGCCAACGAAACAT AGTCGTGGAATTCAATTGCGTTGCAGGACTTCCAAGAGTTGTGCTTGCGC GGAATCACCCCACATATCCAGGCTTGGTCGTTGATACACAGCAGTCCATA TTCGGGCGCACCCAGCCGTGCAACTTGCCGGTATCCAGGGACTACTGCCC TACCTTCCAACCAACAATATGGCGTTTCTTATGACGCAAATCAAGAGGGC TTTTTACGGAGTGTACACAACAAGGAAGAGCTGCTACCCCTCCTCGCCCT TCATTTGCCCTCACCGAAGTCGGTGTGATTTGGTAGTAGGAATTAGTATG CTATGCCGGGCCCCATCGAGGATGAATGTCATGGCACCCTCAGTGGCGGC TGTATTTTCCGTGTGGCCCCCCTGGTGAAATTATCTAGAATACAGTTCAG CCGCACACCCCCTCCCCCTCCCCGCCTGAGTTCCAACGTACGGAAATTTT GGCGCTGTATCCTTCTGTCAACAACGGGGGCCCCCTTTAGGGCCTGTTTG AACGTTAAAAGTTGCGCCTAGAGCAGCCGATTTTGATGGACCTATGCATA GGCATAGTTGGGTTTTCGGCCGAAAAAGGCTTGCGTCGTTTTAACTTAAT TTTGCCATACCCAAGTGCCAATCGAGGTTCAGCAACACCCATATGCGGCG GAATCGCTGCCGCGAGATGACGTTGTCATCAAACAGGTGAAGCGATAGAC AACGTGCACCACGCACGAACTGTAAAAATATGTCAGCACACACGACGCTA CGCATCAGCAGGAGCTTTATCCTCAGGCTTGCTCTACAACTTTTGTTTGG ACTGTCTCGCTGCAAACAACCGGATGTTGGTTTTTGACACCGCACATGTT GGGAAGAAACCTCCTCAGCAACCCAACTACCGCGAACGATGGACACGCTG ACAGAGTTGCAATCCAGCTATTTTCCAGCAGCGGGCAGTGGGCGATGCGT GTGAGTGCCGCACGGCCAGGGTAACGCCAACACGAGTTCGGCTCGTCATG ATTGGTGCAAAGGGGGCGCAGTCCAACTCCGGTACTTCGATTCAGCTAAA AACAATTCAATTTGCAATTGCTTTTCGCTGCACCCAATACCGAAGTCCCG CTTTTCAGGGCAGAGAAAGCCTCATCGTGTTTTTCCGTGGTATTCCCCCC AAACTTAGTTTTTGAAGGGCCTTTATATTGGTGTGTCTTTAGAACATTAA AACAGACCCTGAGGCTTACTCCTATGGCAACCGAAAGTTGGCCCGACCGA TTTTTTTGGACTGGCATACCCCCACCCGGCCTGATTTGACACGAATTCGA CCAAGAGATAGACCTCTCACCATATCACCACAGAGTTCTCCCTCCATGAT GGTCGGATCGCCACCAAACCTTGAAGGCTGTGCGCACTACACGTGTAGGC GTCTTTGAAGCTAGTGGTGACTGCTGTGGGATCTGTGTGTTCTGAGAAAT GTCAATCCATGTGAGCAAAAGTAAGAATCCGTGTGGAGAATCCGTAGGAG ATGCTACAAGAAAAATAGGCCAAACTGTCGTAGAATCCTCGACGGATTCT CCGCACGGATTCTTACTTTTGCTCACATGGATTGACATTTCTCAGAACAC ACCGATCCCACAGCAGTCACCACTAGCTTCAAAGACGCCTACACGTGTAG TGCGCACAGCCTTCAAGGTTTGGTGGCGATCCGACCATCATGGAGGGAGA ACTCTGTGGTGATATGGTGAGAGGTCTATCTCTTGGTCGAATTCGTGTCA AATCCGGGCGGGGGTGTATGCCAGTCCAAAAAAATCGGCCTGAGCCCGTC TGAGCCAAGTAACCGGTTCGTACATATCAGGCGTGTGTGCGGTCCCCCCC CCCGTGCCCCCGTGTTGTTCCCGTCCATTCTGGCGCCAGTCCTCCCTAGA CTGATTTGTTCATGTTTGACGCACCAGACAGAGTCACACAACCGGAAAAA TTACCCACCTTTCCTTTTCCGGTGCTTGCCTTCAATCCTGAACGCGACAA GGCTTGAATCTCTTCCTTCTTTTGTTGTGGGTACTCACGACTCATCTTGC ACTCGTTTGACTTTTCAAAGGGGAATTTTCCATTGGGTGGTTGTTATTAT TCGAACTCACAACCGGGCGATGAATGTGGTTGCTCCAAGCGACGCGTTCG CTGTGTTTGTGGTGTGCCTGTTGTGTACAAGCGCGCAAAAATTGACGTCC GGTGTGGTACTTGGAAGTGTAGTAGTGCGTGTCAAACGTGAAACGTGTGG TCAGCCGGCGTGCCCAACGAACCCATGGTGCATCTGGCTTGACGCAGCAC ACGCAAGGATGACGGGTAGCATAGCCTGGGCCGGCGAAAACCCTGCAAAT CGCTCCGTCGCGAAATTGCAGGGATGCAAGGTCAATGGTCTAATGACTAC GGCAAGTGTTAACAATTAGTACATCCCTCCCCCCTCCCCCCCGACCTGGG TTTCGGTGCACTGGTATCTGGGTGTCAACGTGAAGAGATACGAAAAGCCA TTTTATCATATTTCCATATGACGATGTTCCTTCAAAGGTTGACATTCGTG AACCCCTTTGCCGGGGATAGAAATGGAGTCGACGTTAGTTGGGCGAAACT CACTACGCCGTGCCTCATGTTTGCAAGCCGGCGCTGTGTGGTGGTGGTAT GAATCGCTGATCATGACATGACAAGAGCGTAAGCACCACTTTGATGTTTG GGCTGAGATAAACCAGACAAGTTTGGAATGCTCACGAATGACCTGCTGGG ATGGTGCTTATCGCGGTGTACTGGACAACCATTGGGTAACCATTGGTTAG CAGCCGGAATGTTCACGACGCGAGTGTAACCCGCGAGTTTCTCCGCATGT ACGCTTCAATCGGCCTCGCAGGAGCAGGAGCAGAAGCAGGAGTCGGGATC GAGCCGGCGGCGGGATGAACGGAGATTCTTCTAGAGACAGAGGCCGAAGG AGAGATGGTGACAGGGACAGGGAGCACGACAGGTCTAGGGGGAGAGACAG AGATCCCATCGGCCGAGACAACAGGGAGCGGGGTCGCGACGACTCACGAG ACAGGAACCGTGGAAGTGATGCTGCTCGAGACAGGGACCGAGGCCGTGAG CATTCTCGGGAGAGAGACCGCGGCCGCGGCTCCTCTCGTGACAGGGACTG GGGTCGGGATGAGAGAGATCGGACGAGGGGTAGGGATCGTGACTCTTTTG ACAACACGCGAGACAGAGCTCGCCAATCGGGCGGCCACGGTCAGGGAAGG TAAGCTCGCCGTGTCCCGGAATGATGTCGCAGGTAACTGTTTGTAGCAAA CCTCGAATCCCAACACTTGATGTTGCTGTATGGAGGGCACGCCATGCTTC TGCCGATCCTCATTTTTTCCCACCCCATGTCCCTTGTCAAAGTAGGAGGA GCGATTGAATATCGGTGATCGATGCTGTGGGAGCAATGCTCCGTCCTGTC GAGGACGCGTGTGTTCAATGGCCTAACCGCAAAAAGGCATGCAAAACACA AGAGCACGCCCCCCCCCCCAATGCCCATTGTCACGCTTAGACGCGACCGT GGTCAAACCGCACTAATGGATGGCGGGAGAGCCGGAGGCAGGGATCCATT TAGAGGAAGAGGTGCGCACATGTACCCAGGAGTGTCTGGTGTCACTACCT TTGTGATACCGTCGTAATGTGATGAACGCGCAATCTGTCGTATCCTGCTG GTTTCCTGTTCCAATGTACCATTCCGTTACCTGTGGGGAGTGCGGGCGCA GTCTCTATTGGATTGTGGTTGTTTTTTCTGTGCACGGTGGCTGCTGGGCG GTTTTGCGTATTTTGACCAACATCGCTTTCTCCGCGAAACCGTGCTACCA TGATGCCAGGCCTATCGAACAACGGCCCAATGATGCAGCCGATGGGAGGA AATCTGCCGATGATGCAGCCCATGGGCGTGCCCGGGGCTCCCATATTCCC TCCCCAGGGTGGTGGGCATGGACAAATGGTCTTCACAACAACTCAGCGGC CCCAGCCCAAGCTGCCAGGGCCGCACACTCGCACGTACAACATTCTGCCC ATGATTTCGTTCAAGGTGAAGGAGGATTGTCCAGAATCCCACTGTTTTCA CATTGCCCGAAAGGCCAAACAAATGTTTCCCGCTTCGCAAGCCGCTCGAT GTCCGGTGGCCTGGCCTCCCTTCGATCAACCCAATCCCTGTTCGCGATAG ACATACACTAGTCGTTCACTTGACGCTGGTGAGTCCTATTTCATGTCCTG GTTCTCCTCGCAGGCGTTCATGGCGGAGCAGCGCGACGATGTGACACCAG AGGAATGCAAGCAACGCTACGACGAGTACAAGGCCGACTACGTGCAACGT CTGACACACAGCTTCATTGATGTTCACTGCAAAGAAGTAAGTCCGAATAA TTAGTAGGGAGTCGCTGACACCAGGAGCTCGTCCTTGACTCACTGGTGCA ATTTATCAAATACGCAGCCACAGGGTGCATGCAAACCTTTCCCTTGGTGT TGAAGGTGTCTTGTTCTTTTCTTGCCCTTGACCAGGAATGGTTCCTCGAA CGGTACCACCCAAAGAAAGCTGAATCAACGAGGAACGCCAAACTGAAGTG GGTGGAGAAGGAGTCGGCCGTGTTCGGGGAGCAGCTACGTGCCAACCCGC GGTTGTTCATCGCCAGCGCTTCGCTTGATCCTATTTCCGAGGTATATGCA TCTTGCCTTGTGTGTCGGTAAATTTCAATTGGTGCATGTTTTTCTTGTAA GTAAAGTGCTCTTGTGTGACGTTTGCCGAGGAGCTATTGCCTGTTGCACA GTTTGGCTCAGCTGGTTTGGCGCTTCAGGCAGGCACAGCAGTGCACAACA GTCGGTAAACACTGACTGCGGCCGCATGCCTTGGGGTTTGTTTGGAAGTG TCTATGCCGGCCTATGAGATGACCCGTGCATACAAACCCAGACGCTGACT GGCTGGTTCCGACCCGGTGATTATTCCAGGAACAGCGCTGGGGTGGCATG GACAAACGCAAGAAGCGCCCCCGCAACTCGAGTCGGGAGGACGCTTCGGT TGACGCTATGGAAGAAGACTTGGATCAACCGGGCGAGACAATGCCTCAGG TGACATTATGTGATTGCGGACAATCTTGCGTGGGGGACGCGAAGCTCTTG GTCGCGCTGTTTCTTCGCTATTGCGTGTTTCGTTCCAATCGGCGCTGACA CGTGTTGGTGACATTCGTCCAAATACAACAGCAGGACGATAAAGACGATG GCGACGCCGACTACGACGTGGATGCAAAGGATATTTCCGCACACTCCGAC AAGGTGGCCTTCATTCGCCGGATCCCTGCGTGGGTGTCGACGGACGAGCT TGGACGTCAGGTATATAATTCATTTCATGGTCATTCAACAGCGCCAGAGT GAATCAGTAGGTAACCTCGCAACCCTCAGGCGTTTGGGACGTGGGTTTGA ATCTCGGCACAGTCACGCATTTTTTATCGTAAGATGCCCTAACACTGTGG AATGCGGTACTTCGTTGTTTAAACAAAAAAACGACTTCGAAAAAATCGAC GAGGGATAGAAACGACTGAATCCTTCTCGCGATAAGAATGTAGGCAAAAG CACCGTCGAAGGAAGGCGAAGGAGAAATCTCCTGTGCGGCCCTCGTCCTG TGTGACCCCGGCCGGTGCGTCCAAGATTTATACCGAAAGCGGTGGAGACA CGCATCAAAAATAAGTGGGGTGACCAAAACATGGAAATGACTCGGAGTGA TTGGGAACCGTCGCTTGCCGCGTAGCGTGCGGGGTACGTGATCGACCCGA GAGCTGTCTCGTCTATTTCATCATGACACGAGAAAACCGAGAAGGCGCCC TTGCTACGGTTTGCAACAATGTCGACTTACCTCCGTGTGATCCAGATTAT TGAGGAAGCGCCCAAGCACGAACGCATTGTTTGCTCGGACGCCGCGAACA CACGCAACGACGACTTCGCCCGCTCAGCGTACATCATCTACGATACGCCT GAGAAAGCGACGAAGGCTGTGCAGCAGCTGAACAAGATGCGCATATATCA AAATTCTAAGCCCAAAAGTGAGAGCTGGTTTACAGTCTGACTGGAAAAAG TAGTGACCCAGTCTCTGACAATGGAGTGCCGGAAGTTTAGGTCCCCACGA TTGCCATATCTGCACTGTGCCATTTGCTGCTTTTTCACGTGCTCGTTTTC TGGACACTTGCGATGTATTCCGGTGTTGGTGAAGGCTCCCTGTATCTCGT GTGTCTAGCCTAGTTGTCGAGGGTCGTGTGTGACGACAAATGCATTCCGT GTTTGTGGGTGGCAGCCAAAATCGCCAAGAAGCAGAGCGGAGACGGGAGG TACTTCGAGCTGAAGGTATTTTCCTACCAGCCGCGCAGCCAGAACTCGGT GGATCACGAATTCTCCACGGCGAACCGTGTTGCTCATGACATCAAGCAGA GCCTGAAGGTTGCGAAGGCGCTTGACGAGGAATTTCGTCGGGCGGAAAGC ACCGACGGCATCACGGCGCTTCTCGCGGAGCCAGAGGTGAGTGCACAAGG GTTCCACCCGTCTTTTGTTTATTTTTTTCTCGGCAGACACGTGATGGCAT CGTGCTGGCATTCCAGGTGAAGTATCGCGTACGATTTGTATGCGCACAGG CAGTCGTTTGCTCGTTGTTCGTGTTGTCCTGTTTCACGTGTTCGATGTCC TCGATGTCTCTTCAATGCGGGCAGCCATCACCTACTACTGCATGCAGGTT CAGTAGGACATGCGCACTTGCCCTGCTACATGCAGGCATATGAAGGCAGC ACGTCGAACAGCATACCGGCCGTCATCGTGTGCTTGTTGTGAACTGTTGG CCTTCTGAGCCGCCGCTACTGCGATCCCAGCTTGAGGCCTCATGTCAACC CTTTCCAATCTTCGCGTGCGCATTGTCATGCTTGATGCAGGTCCAGGCTG CGCTTACATCGTCGTCATCAGGGGCTGCCCAACTAGATCTGGTGTGCGCT TACATGAAGCGTGTCTATTTCTACGTGTACTACCGGGGGCAGCAGTACAG GGACGAGGGGGACATGATCGCCTCAAGGGGAGCAGGTCGCGGTGTTCCGG CGGCATCCAAGGAAGAAATTCAAGCGGCAAGTGATCTTTCAACCAATGTA TAGATGAAGTCAGGGTTGGGCTGTGGATTCAAACTAAGGAGTCTTTCGCA GGCAGCCAACGGTAGTGATAACTTTGTCCAATGTAGCTGGCTTTATGGAT CCAAATGATCCAAACACAGGCCGCTAGAAAATTGTGTTTCAAGTCGTTTT CCGATGAAACAACAAGAACGGTCACGGTTGACATGTTGCACGTGGTTTGG ATTTCCGGAACGTTTGGATCGGTGTGGCTTTCTTGTGAGCCACTCCGCGG AGTATCCAATACTGCTGAGTAACGCGAACGACAGCTTCGTGCGTATTTCG TCTGACAACCAGCGACAGCAGGATGAAAAAAGACCAAGCGGTGGTGATTT GAGGGCTACACAGCTCATTTTTGTACAACCTGCGTGGTTCGGTGTTGCAG GCCATGAGCAAGGCAGACGCCGTGGAGGGCACGAACGGCGGTGTTGCGGA AGCAAGTGTGGGTTCGACCGACAAGGGCGAGACGGGGCAGAACAGCAGAC GTGGATCCGGAACAGAGTTTGTCGACGCTCGTTCCGCTGACCGGATTAAG CAGGCGGAAAATGCAGAGGAGACGCGCAAGAAAGACCAGGCGTTCGTTGA GCGCTACGATGAGCGCGTCAAAGCGGTGCGAAGCATACCTGTTCAGTGTC GCATTGATGTACTCAAAGGTTATTTCACACGACCAGGCACGGCAGATGTT AGACCATGCGCAACTCACTGTGTCCACGCATGTTACCGCCTGTTTGCTCG TGTCTCGTTTAGAGATGTCGCTTTTTTGTTGATGTCTATGGTGCGGAGAA ATCCTGGCTCCATGCTGCCCCTGCGGGCATCTTTCCCGTTGACATTCGCG TCTGTATCTCGCTCTCTCTCTCTGACCCCATTGGACCTGGATTTTCCTTA CCCCATGCTCTCAGGAGGTGACAAAGTGGCAAGCCATGAACACGGGTCGC ACCGATGAAGGCTACGCCCGCTGCGTAATGCCCAACTGTGGGAAGGCAAG TAGTGAATTCAGAGGGTTTCTCTTAGGCAGGTGGTAGGGTAACGCATTTA TTCGTAAGAGCTGTTGGTGTTGAGCATCGCTCAGTCAGCTTGTTCGCGCA TCCTAGACAAACTCTGCCGCTCCAAGTCTATGGGTTGCTTGGCCACACCC TGTGTTGGCAATTGTTTCAGATCACGTTTCGGGTAAACGCATAGAGTGAT GAAATGAAGCCCGTGTGTGGTTGGGTAGTTGCAAACGTAGTCTCCAGTGA GGACAAAAGTGAAACGGAGGGAATGCCGGCTGGTGGCATCGAGTGCAGGC GGAGTAGGCCGGCGCACAAGTCGCTGCGCCCAAGTATATATTAGTATCGA ATGTTCACAGTCTGCTGCATACTCACCGCTAGGTTCGGTTCTCCCGTCGT TGTTTACATTTGAAGCTGTTTGTCTTTGTTTTTGCTATATTCGCAGCTCT TCAAGGCCCCGGAGTTCGTCCACAAGCATCTGGTCAACAAACATCCTGAT AAGTACAAGCTCGTACTCGATCAGGTGAAGCATTGCGCCTATTCTCATAC AAGTACACTTTCGCAAGACACTCGGTTGAATTTCGGTGTGATTCTGCAAG CCCGCGAGAAAAGGCTGGCGTCGTGTACAAACTATGAATCGGCTCGGGTG GGTGTAAGCACGTCTGTGGCTCGGGGGATACCAGTCTTGGGGTAAAGTGA TAGCGCTGTGCCTCTCACCGCAGTCGTGTCGTGGTTTCATGCGTTATGGT TGATGTTGTTCATGTTCACCTTTCCACCCCCTCCCAGGTGGCGGACCCTT TCGTGCGCGAGTTGCTATTGGTAGATGACAACAAGCCCCTGCCCAACATC GTGGCGGACGCGAACACTCCTCCCGTGGTGCTTTTACCGGGCGCAATGGC GATGGGTGGGACGCTTGGAGCCATGCCTCAGGGCCCGCCTCCTATGGGCG CTCCGGGGTTCCCGATGATGGGCGGCGGTATGCCGATGGGCATGGGGGGC ATGATGGGGCCGATGGTCCCCGGTCAGATGGGCGGTATGGGCGACTTTCC GATGCAGATGCCGATGCCGCCGGGTGAGTGGCGCCTCATATGATCGGTTG AATTTAGACTGGAAGAATGTACCATCAAAGCGATCGCAGTTGGCTGTCTT CGTTTGGGGATCGTTGGCCGTTAAGCTCCGTGAAGCGTGTAAATGCGACA CTGATTGTATTGCTCACGCCCGTACCTTTTGTGGGTACTGGTGAGCTGTC TCAAAGGTCTCGGCATGTCGGTCTGTGTTCTAACTTTGGTTTCTGGTACT CGTTGCCCCCCCCCCTGTGCTCGCAGACGCCATGATGGGTTCAGCCGGGC GCGGCTTCAGAGGCAGGGGCGGTGGAGGTTTCCGCGGCAGAGGCGGTCCC GGGGGGCGTTTCGGAGGACGAGGCATGGGGAGGGTGGACAGCATGCCGGA GCCGACGGGACCGAGGGACCCGAGGAGCCTCGTATCTTACGTTGACGTGG ATGCCCCGAAGGTAACCAAAGTTGTAATATTTTATGTTTGCGGGGGACGG CACCTTTCATGTACGTGAAGTACATTGGAAATCACAGGCAAAACTGCAAA GCACGTTTGTTGTATGCTGGAATGAGAGTCACTACTTTTCGCCATACCAC GTAGCGCAGATGAGCACGGTTTCCGAAAGTATGAAGCCGGTGCTCAACTC AACAACACTCCGTTTTGTAGGGACTAGTGTTCCTACAAGAGGATCCCTTC AATGTGCGGTGGGGAGTAGTTGTGTGCTGGTGGGAGCTTGTGCGTCCACG CAGGGCTGACACACGCAGGGCTGATACAGAGTTGATACGTGTTCTGCAAC CCAAGTGTCGGCATCCTCACAATCGCTTGGCATCGCGCTGTCATGCCCCA TGCAGGAAACAACACCGAACTTGGACTACGGCGATGCGTTCCCTTCCAAG TCTAAGAAGAAAAGGAAGACCATGTAACCAGAGCCCAACATCGATACGGC GGCGATGTTTGTGGTGTTTGCATGTGACTTGGCCAGCTTCTCGCGTCACA CTGTTCTGAAGAAAGAGCGGCCGTGTGGCAGGCAGTAGCACTTAGAATCG ATATCAGATCGGGAGTGGGTTGGATTGTTTTTACGCGGCTTCACCTTGCC CAGCAACTTGCCCAGCAAGTGCTGTATTCAATCGTTTGGGAGGTGTTGAC TGCAGGTGCTGCATCAGACAACTCCGTCGGCATCAGACATTGGGATTCCA CGGTTCTGTACCAAAAGAGGGTATGTTTGGCTGGTCGTCACCAGAACTGG AAGCCTGTCCGGCACGCGGTGGAAGCAGTGTTCGCCTTCGTTAATTGTGG ATGGATGAAGACGTGGAACAAGATGCGCGTCCCCTCTCGTCTACTATTGG GACGGACGTTCGACGCACCAGGGGGTGGTTGGATATAGAGATGATTTCTG ACGTCGCTGTAGGGAACTCAGCCGTCGTAGGGGCGGAGGATGATTCTGCG GATGTGGTATGAAGGTGTCCGTGCTGAGTAAGAGGTTGTTGTGTACCAGC ATGTTCGCGCTACAACTGTAGGCAGATCCATGGTAGTTACCACCACGTCC CGAGGTGTAGTGTGAAGCGGAGTTCTTACGATGGACAATCTGGCGTTGAT ATGCACCTTAAGTGCCTAGCTTTCCACATCCCCGAGTCGAAAAGGTCGTG TGCCCGAAGCTAGCCTGGGAAACCAGAGAATGTATTTCACATTGGCGGGG GCTGTGCAGAACTAAACTTCACCAACGACATAATACAGAGAACAAATTGA GTAGCTTGAACGGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig762:7533..19148+

>mRNA_Ecto-sp13_S_contig762.18831.1 ID=mRNA_Ecto-sp13_S_contig762.18831.1|Name=mRNA_Ecto-sp13_S_contig762.18831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3018bp|location=Sequence derived from alignment at Ecto-sp13_S_contig762:7533..19148+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGAGTCGAAGGCAGACGTTCAGTCCGAGGTGGTGGTAGACTCACA
CGAACAGCAGACGACCGCAGCAGCAGCTGCAGCAGTATCAGCAACAGCCG
CCGATGGCGACGACATACCTGGAGTACCGGCGACGCTGGATGCAGCAGAG
GGAACCAATGGCGTCGCGGCTGGTGATGAGACTGTTGTGGATGAGGTGAT
CGATGCTGCAGACGACTTTGGCGGCAGCAGGGTCGTCGGGCGCGAAGGTA
GCGAAAACGGCCACGACGACGAGCCCCCGAGCAGACGGGGCAGGCGAGGG
AGAAGCAGGAGCAGGAGCAGAAGCAGGAGTCGGGATCGAGCCGGCGGCGG
GATGAACGGAGATTCTTCTAGAGACAGAGGCCGAAGGAGAGATGGTGACA
GGGACAGGGAGCACGACAGGTCTAGGGGGAGAGACAGAGATCCCATCGGC
CGAGACAACAGGGAGCGGGGTCGCGACGACTCACGAGACAGGAACCGTGG
AAGTGATGCTGCTCGAGACAGGGACCGAGGCCGTGAGCATTCTCGGGAGA
GAGACCGCGGCCGCGGCTCCTCTCGTGACAGGGACTGGGGTCGGGATGAG
AGAGATCGGACGAGGGGTAGGGATCGTGACTCTTTTGACAACACGCGAGA
CAGAGCTCGCCAATCGGGCGGCCACGGTCAGGGAAGACGCGACCGTGGTC
AAACCGCACTAATGGATGGCGGGAGAGCCGGAGGCAGGGATCCATTTAGA
GGAAGAGGCCTATCGAACAACGGCCCAATGATGCAGCCGATGGGAGGAAA
TCTGCCGATGATGCAGCCCATGGGCGTGCCCGGGGCTCCCATATTCCCTC
CCCAGGGTGGTGGGCATGGACAAATGGTCTTCACAACAACTCAGCGGCCC
CAGCCCAAGCTGCCAGGGCCGCACACTCGCACGTACAACATTCTGCCCAT
GATTTCGTTCAAGGCGTTCATGGCGGAGCAGCGCGACGATGTGACACCAG
AGGAATGCAAGCAACGCTACGACGAGTACAAGGCCGACTACGTGCAACGT
CTGACACACAGCTTCATTGATGTTCACTGCAAAGAAGAATGGTTCCTCGA
ACGGTACCACCCAAAGAAAGCTGAATCAACGAGGAACGCCAAACTGAAGT
GGGTGGAGAAGGAGTCGGCCGTGTTCGGGGAGCAGCTACGTGCCAACCCG
CGGTTGTTCATCGCCAGCGCTTCGCTTGATCCTATTTCCGAGGAACAGCG
CTGGGGTGGCATGGACAAACGCAAGAAGCGCCCCCGCAACTCGAGTCGGG
AGGACGCTTCGGTTGACGCTATGGAAGAAGACTTGGATCAACCGGGCGAG
ACAATGCCTCAGCAGGACGATAAAGACGATGGCGACGCCGACTACGACGT
GGATGCAAAGGATATTTCCGCACACTCCGACAAGGTGGCCTTCATTCGCC
GGATCCCTGCGTGGGTGTCGACGGACGAGCTTGGACGTCAGATTATTGAG
GAAGCGCCCAAGCACGAACGCATTGTTTGCTCGGACGCCGCGAACACACG
CAACGACGACTTCGCCCGCTCAGCGTACATCATCTACGATACGCCTGAGA
AAGCGACGAAGGCTGTGCAGCAGCTGAACAAGATGCGCATATATCAAAAT
TCTAAGCCCAAAACCAAAATCGCCAAGAAGCAGAGCGGAGACGGGAGGTA
CTTCGAGCTGAAGGTATTTTCCTACCAGCCGCGCAGCCAGAACTCGGTGG
ATCACGAATTCTCCACGGCGAACCGTGTTGCTCATGACATCAAGCAGAGC
CTGAAGGTTGCGAAGGCGCTTGACGAGGAATTTCGTCGGGCGGAAAGCAC
CGACGGCATCACGGCGCTTCTCGCGGAGCCAGAGGTCCAGGCTGCGCTTA
CATCGTCGTCATCAGGGGCTGCCCAACTAGATCTGGTGTGCGCTTACATG
AAGCGTGTCTATTTCTACGTGTACTACCGGGGGCAGCAGTACAGGGACGA
GGGGGACATGATCGCCTCAAGGGGAGCAGGTCGCGGTGTTCCGGCGGCAT
CCAAGGAAGAAATTCAAGCGGCAAGTGATCTTTCAACCAATGCCATGAGC
AAGGCAGACGCCGTGGAGGGCACGAACGGCGGTGTTGCGGAAGCAAGTGT
GGGTTCGACCGACAAGGGCGAGACGGGGCAGAACAGCAGACGTGGATCCG
GAACAGAGTTTGTCGACGCTCGTTCCGCTGACCGGATTAAGCAGGCGGAA
AATGCAGAGGAGACGCGCAAGAAAGACCAGGCGTTCGTTGAGCGCTACGA
TGAGCGCGTCAAAGCGGAGGTGACAAAGTGGCAAGCCATGAACACGGGTC
GCACCGATGAAGGCTACGCCCGCTGCGTAATGCCCAACTGTGGGAAGCTC
TTCAAGGCCCCGGAGTTCGTCCACAAGCATCTGGTCAACAAACATCCTGA
TAAGTACAAGCTCGTACTCGATCAGGTGGCGGACCCTTTCGTGCGCGAGT
TGCTATTGGTAGATGACAACAAGCCCCTGCCCAACATCGTGGCGGACGCG
AACACTCCTCCCGTGGTGCTTTTACCGGGCGCAATGGCGATGGGTGGGAC
GCTTGGAGCCATGCCTCAGGGCCCGCCTCCTATGGGCGCTCCGGGGTTCC
CGATGATGGGCGGCGGTATGCCGATGGGCATGGGGGGCATGATGGGGCCG
ATGGTCCCCGGTCAGATGGGCGGTATGGGCGACTTTCCGATGCAGATGCC
GATGCCGCCGGACGCCATGATGGGTTCAGCCGGGCGCGGCTTCAGAGGCA
GGGGCGGTGGAGGTTTCCGCGGCAGAGGCGGTCCCGGGGGGCGTTTCGGA
GGACGAGGCATGGGGAGGGTGGACAGCATGCCGGAGCCGACGGGACCGAG
GGACCCGAGGAGCCTCGTATCTTACGTTGACGTGGATGCCCCGAAGGAAA
CAACACCGAACTTGGACTACGGCGATGCGTTCCCTTCCAAGTCTAAGAAG
AAAAGGAAGACCATGTAA
back to top