mRNA_Ecto-sp13_S_contig76181.18828.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76181.18828.1
Unique NamemRNA_Ecto-sp13_S_contig76181.18828.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76181.18828.1 vs. uniprot
Match: D7FYI5_ECTSI (F-actin-capping protein subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.020e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 YTVAVGAGSAEVCGAITVRGHYFENGNIQLQTSKQVGAKTVA 126
            YTVAVGAGSAEVCGAITVRGHYFENGNIQLQTSKQVGAKTVA
Sbjct:  190 YTVAVGAGSAEVCGAITVRGHYFENGNIQLQTSKQVGAKTVA 231
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BLAST of mRNA_Ecto-sp13_S_contig76181.18828.1 vs. uniprot
Match: A0A6H5KUK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.100e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 YTVAVGAGSAEVCGAITVRGHYFENGNIQLQTSKQVGAKTVA 126
            Y+VAVGAGSAEVCGAI VRGHYFENGNIQLQTSKQVGAKTVA
Sbjct:  283 YSVAVGAGSAEVCGAIAVRGHYFENGNIQLQTSKQVGAKTVA 324
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BLAST of mRNA_Ecto-sp13_S_contig76181.18828.1 vs. uniprot
Match: F0YJQ7_AURAN (F-actin-capping protein subunit alpha (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJQ7_AURAN)

HSP 1 Score: 53.9 bits (128), Expect = 2.700e-7
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 YTVAVGAGSAEVCGAITVRGHYFENGNIQLQTSKQVGAKTVA 126
            +TV +G G A V GA+ VR HYFE+GN+QLQTSK  G  TVA
Sbjct:  176 WTVVLGDGEALVSGAVKVRAHYFEDGNVQLQTSKTCGEATVA 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76181.18828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYI5_ECTSI1.020e-18100.00F-actin-capping protein subunit alpha n=1 Tax=Ecto... [more]
A0A6H5KUK7_9PHAE4.100e-1795.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YJQ7_AURAN2.700e-761.90F-actin-capping protein subunit alpha (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76181contigEcto-sp13_S_contig76181:366..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score84.7
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7FYI5
Preferred nameCAPZA2
Model size126
KEGG rclassRC00027,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00167,ko:K03065,ko:K10364,ko:K14842
KEGG ReactionR07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,ko03050,ko04144,ko05169,map00280,map00640,map01100,map01110,map01130,map03050,map04144,map05169
KEGG ModuleM00036,M00341
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000278,GO:0000281,GO:0000902,GO:0000910,GO:0000912,GO:0000915,GO:0000916,GO:0001669,GO:0001709,GO:0001932,GO:0001933,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005884,GO:0005886,GO:0005903,GO:0005911,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006810,GO:0006888,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007010,GO:0007015,GO:0007017,GO:0007018,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007293,GO:0007294,GO:0007444,GO:0007596,GO:0007599,GO:0008064,GO:0008092,GO:0008150,GO:0008290,GO:0009605,GO:0009611,GO:0009653,GO:0009888,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010563,GO:0010591,GO:0010594,GO:0010595,GO:0010605,GO:0010632,GO:0010634,GO:0010638,GO:0010639,GO:0010646,GO:0010648,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016324,GO:0019220,GO:0019221,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030054,GO:0030141,GO:0030154,GO:0030334,GO:0030335,GO:0030427,GO:0030479,GO:0030706,GO:0030716,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030836,GO:0030837,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0031323,GO:0031324,GO:0031333,GO:0031334,GO:0031344,GO:0031345,GO:0031399,GO:0031400,GO:0031410,GO:0031674,GO:0031982,GO:0032101,GO:0032103,GO:0032268,GO:0032269,GO:0032271,GO:0032272,GO:0032273,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032872,GO:0032873,GO:0032879,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0034097,GO:0034315,GO:0034329,GO:0034330,GO:0035220,GO:0035295,GO:0035722,GO:0036213,GO:0040011,GO:0040012,GO:0040017,GO:0042060,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043243,GO:0043244,GO:0043254,GO:0043292,GO:0043332,GO:0043408,GO:0043409,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044449,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044837,GO:0044877,GO:0045087,GO:0045165,GO:0045177,GO:0045936,GO:0046328,GO:0046329,GO:0046907,GO:0046982,GO:0046983,GO:0048002,GO:0048193,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0050918,GO:0050920,GO:0050921,GO:0051015,GO:0051016,GO:0051125,GO:0051127,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051286,GO:0051301,GO:0051489,GO:0051490,GO:0051493,GO:0051494,GO:0051495,GO:0051641,GO:0051649,GO:0051693,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060491,GO:0061640,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0070302,GO:0070303,GO:0070671,GO:0070887,GO:0071203,GO:0071310,GO:0071345,GO:0071349,GO:0071526,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0097223,GO:0097435,GO:0097708,GO:0098590,GO:0098862,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:0110054,GO:0110055,GO:0120025,GO:0120032,GO:0120033,GO:0120035,GO:0120038,GO:1901879,GO:1901880,GO:1901881,GO:1902404,GO:1902407,GO:1902410,GO:1902531,GO:1902532,GO:1902743,GO:1902903,GO:1902904,GO:1902905,GO:1903047,GO:1903475,GO:2000145,GO:2000147,GO:2000601,GO:2000812,GO:2000813,GO:2001026,GO:2001028
Exons1
EggNOG free text desc.barbed-end actin filament capping
EggNOG OGsKOG0836@1,KOG0836@2759
Ec32 ortholog descriptionF-actin-capping protein subunit alpha
Ec32 orthologEc-23_003060.1
EC1.2.4.4
Cds size126
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03009,ko03051,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464031.4609377-CDS-Ecto-sp13_S_contig76181:365..4911681464031.4609377-CDS-Ecto-sp13_S_contig76181:365..491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76181 366..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76181.18828.1prot_Ecto-sp13_S_contig76181.18828.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76181 366..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76181.18828.1

>prot_Ecto-sp13_S_contig76181.18828.1 ID=prot_Ecto-sp13_S_contig76181.18828.1|Name=mRNA_Ecto-sp13_S_contig76181.18828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
YTVAVGAGSAEVCGAITVRGHYFENGNIQLQTSKQVGAKTVA
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mRNA from alignment at Ecto-sp13_S_contig76181:366..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76181.18828.1 ID=mRNA_Ecto-sp13_S_contig76181.18828.1|Name=mRNA_Ecto-sp13_S_contig76181.18828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76181:366..491- (Ectocarpus species13 EcNAP12_S_4_19m)
TATACCGTGGCGGTTGGGGCAGGATCAGCGGAGGTTTGCGGTGCGATAAC
TGTGCGGGGGCACTACTTCGAGAACGGTAACATCCAACTGCAGACGTCGA
AACAAGTTGGAGCGAAAACAGTCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76181:366..491-

>mRNA_Ecto-sp13_S_contig76181.18828.1 ID=mRNA_Ecto-sp13_S_contig76181.18828.1|Name=mRNA_Ecto-sp13_S_contig76181.18828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76181:366..491- (Ectocarpus species13 EcNAP12_S_4_19m)
TATACCGTGGCGGTTGGGGCAGGATCAGCGGAGGTTTGCGGTGCGATAAC
TGTGCGGGGGCACTACTTCGAGAACGGTAACATCCAACTGCAGACGTCGA
AACAAGTTGGAGCGAAAACAGTCGCG
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