mRNA_Ecto-sp13_S_contig7611.18821.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7611.18821.1
Unique NamemRNA_Ecto-sp13_S_contig7611.18821.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI000A0154F4 (HNH endonuclease n=1 Tax=Eubacterium xylanophilum TaxID=39497 RepID=UPI000A0154F4)

HSP 1 Score: 51.2 bits (121), Expect = 1.390e-6
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 1
Query:   19 RREVITPGMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRSA 219
            +R ++TP +R  +       C  C + +      +  DHI+PV+ GG T RSNL +LC+ C++S+ A
Sbjct:   30 QRALMTPELREEIAERDNYTCQICGRYMPDG-FGLQIDHIIPVSKGGKTVRSNLQVLCMKCNQSKGA 95          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: A0A2T1EQQ6_9CHRO (HNH endonuclease n=1 Tax=Chlorogloea sp. CCALA 695 TaxID=2107693 RepID=A0A2T1EQQ6_9CHRO)

HSP 1 Score: 49.7 bits (117), Expect = 3.750e-6
Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = 1
Query:   22 REVITPGMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSR 213
            R +I P +R  +F   +  C  C K  T S A+++ DHI+P+  GG    SNL  LC +C++ +
Sbjct:    6 RILIPPEVRKYVFERDRYHCQSCGK--TNSEANLNVDHIIPLARGGKNDLSNLQTLCCTCNQRK 67          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI00109F5CC1 (HNH endonuclease n=1 Tax=Ningiella ruwaisensis TaxID=2364274 RepID=UPI00109F5CC1)

HSP 1 Score: 48.1 bits (113), Expect = 3.160e-5
Identity = 22/61 (36.07%), Postives = 32/61 (52.46%), Query Frame = 1
Query:   43 MRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFE 225
            +R I+       C  C K   ++     CDHI+P + GG    SNL +LCV CH+ ++A E
Sbjct:   58 LRKIVLERDNHLCQICLKK-GKAVTGNQCDHIIPKSRGGTDSLSNLQILCVDCHRKKTAKE 117          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: A0A7C8B1L3_9DELT (HNH endonuclease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C8B1L3_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 3.930e-5
Identity = 21/58 (36.21%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   46 RNIMFADQKGECNCCRKALTQSPAD-VDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRS 216
            R +M    + + + C+K  T  P D ++ DHI+PV+ GGP+   NL +LC +C++ +S
Sbjct:  150 RKVMLQVVRRDGHICQKCRTNVPDDEIEFDHIIPVSKGGPSSVENLRVLCRACNRKKS 207          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI001E3B84E6 (HNH endonuclease n=1 Tax=Burkholderia pseudomallei TaxID=28450 RepID=UPI001E3B84E6)

HSP 1 Score: 46.6 bits (109), Expect = 3.960e-5
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  130 DHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFER 228
            DHI+P+  GG     NLHLLC+ CHK ++A +R
Sbjct:    7 DHIIPLEQGGTNDDDNLHLLCIDCHKKKTATDR 39          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI001D005C04 (HNH endonuclease n=3 Tax=Burkholderia TaxID=32008 RepID=UPI001D005C04)

HSP 1 Score: 46.6 bits (109), Expect = 4.140e-5
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  130 DHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFER 228
            DHI+P+  GG     NLHLLC+ CHK ++A +R
Sbjct:    9 DHIIPLEQGGTNDDDNLHLLCIDCHKKKTATDR 41          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI0002ACE1D0 (HNH endonuclease n=1 Tax=Synechocystis sp. PCC 7509 TaxID=927677 RepID=UPI0002ACE1D0)

HSP 1 Score: 47.0 bits (110), Expect = 4.270e-5
Identity = 20/61 (32.79%), Postives = 34/61 (55.74%), Query Frame = 1
Query:   31 ITPGMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSR 213
            + P +R  +F      C  C K  T + A+++ DHI+P+  GG    SNL  LC++C++ +
Sbjct:    9 LPPEVRKYVFERDLHHCQSCGK--TDTEANLNIDHIIPLARGGKNDLSNLQTLCITCNQRK 67          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI0016055CA5 (HNH endonuclease n=2 Tax=Burkholderia pseudomallei TaxID=28450 RepID=UPI0016055CA5)

HSP 1 Score: 47.0 bits (110), Expect = 6.140e-5
Identity = 20/63 (31.75%), Postives = 34/63 (53.97%), Query Frame = 1
Query:   40 GMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFER 228
            G++  +   ++    C +  +     +VD  HI+P+  GG     NLHLLC+ CHK ++A +R
Sbjct:   15 GVKQRLRIRRRDNYTCQKCGIAVHAGEVD--HIIPLEQGGTNDDDNLHLLCIDCHKKKTATDR 75          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: A0A2Z4R776_MORBO (HNH endonuclease n=1 Tax=Moraxella bovis TaxID=476 RepID=A0A2Z4R776_MORBO)

HSP 1 Score: 47.0 bits (110), Expect = 6.520e-5
Identity = 22/61 (36.07%), Postives = 34/61 (55.74%), Query Frame = 1
Query:   43 MRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFE 225
            +R+ + A     C CC +   +    ++ DHIV V  GG   +SNL +LC SCHK+++  E
Sbjct:   34 LRDEILARDSYTCQCCGRVGGR----LELDHIVNVAQGGTNDKSNLQILCHSCHKTKTQSE 90          
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI001604BF81 (HNH endonuclease n=4 Tax=pseudomallei group TaxID=111527 RepID=UPI001604BF81)

HSP 1 Score: 46.6 bits (109), Expect = 8.670e-5
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  130 DHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFER 228
            DHI+P+  GG     NLHLLC+ CHK ++A +R
Sbjct:   43 DHIIPLEQGGTNDDDNLHLLCIDCHKKKTATDR 75          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI000A0154F41.390e-634.33HNH endonuclease n=1 Tax=Eubacterium xylanophilum ... [more]
A0A2T1EQQ6_9CHRO3.750e-635.94HNH endonuclease n=1 Tax=Chlorogloea sp. CCALA 695... [more]
UPI00109F5CC13.160e-536.07HNH endonuclease n=1 Tax=Ningiella ruwaisensis Tax... [more]
A0A7C8B1L3_9DELT3.930e-536.21HNH endonuclease n=1 Tax=Deltaproteobacteria bacte... [more]
UPI001E3B84E63.960e-551.52HNH endonuclease n=1 Tax=Burkholderia pseudomallei... [more]
UPI001D005C044.140e-551.52HNH endonuclease n=3 Tax=Burkholderia TaxID=32008 ... [more]
UPI0002ACE1D04.270e-532.79HNH endonuclease n=1 Tax=Synechocystis sp. PCC 750... [more]
UPI0016055CA56.140e-531.75HNH endonuclease n=2 Tax=Burkholderia pseudomallei... [more]
A0A2Z4R776_MORBO6.520e-536.07HNH endonuclease n=1 Tax=Moraxella bovis TaxID=476... [more]
UPI001604BF818.670e-551.52HNH endonuclease n=4 Tax=pseudomallei group TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7611contigEcto-sp13_S_contig7611:3646..3873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464031.0171552-CDS-Ecto-sp13_S_contig7611:3645..38731681464031.0171552-CDS-Ecto-sp13_S_contig7611:3645..3873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7611 3646..3873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7611.18821.1prot_Ecto-sp13_S_contig7611.18821.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7611 3646..3873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7611.18821.1

>prot_Ecto-sp13_S_contig7611.18821.1 ID=prot_Ecto-sp13_S_contig7611.18821.1|Name=mRNA_Ecto-sp13_S_contig7611.18821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
GPTSPVRREVITPGMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVT
HGGPTCRSNLHLLCVSCHKSRSAFER
back to top

mRNA from alignment at Ecto-sp13_S_contig7611:3646..3873+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7611.18821.1 ID=mRNA_Ecto-sp13_S_contig7611.18821.1|Name=mRNA_Ecto-sp13_S_contig7611.18821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7611:3646..3873+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCAACTAGCCCGGTCAGGCGCGAGGTCATCACACCGGGCATGAGAAA TATCATGTTCGCCGACCAGAAGGGAGAGTGCAACTGCTGTAGGAAAGCTT TGACGCAGTCTCCAGCCGACGTCGATTGTGACCATATCGTGCCCGTTACA CACGGTGGGCCCACGTGCAGGTCGAACCTACACTTGCTATGCGTGTCTTG TCACAAATCAAGAAGTGCGTTTGAGCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7611:3646..3873+

>mRNA_Ecto-sp13_S_contig7611.18821.1 ID=mRNA_Ecto-sp13_S_contig7611.18821.1|Name=mRNA_Ecto-sp13_S_contig7611.18821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7611:3646..3873+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCAACTAGCCCGGTCAGGCGCGAGGTCATCACACCGGGCATGAGAAA
TATCATGTTCGCCGACCAGAAGGGAGAGTGCAACTGCTGTAGGAAAGCTT
TGACGCAGTCTCCAGCCGACGTCGATTGTGACCATATCGTGCCCGTTACA
CACGGTGGGCCCACGTGCAGGTCGAACCTACACTTGCTATGCGTGTCTTG
TCACAAATCAAGAAGTGCGTTTGAGCGG
back to top