mRNA_Ecto-sp13_S_contig7611.18821.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI000A0154F4 (HNH endonuclease n=1 Tax=Eubacterium xylanophilum TaxID=39497 RepID=UPI000A0154F4) HSP 1 Score: 51.2 bits (121), Expect = 1.390e-6 Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 1
Query: 19 RREVITPGMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRSA 219
+R ++TP +R + C C + + + DHI+PV+ GG T RSNL +LC+ C++S+ A
Sbjct: 30 QRALMTPELREEIAERDNYTCQICGRYMPDG-FGLQIDHIIPVSKGGKTVRSNLQVLCMKCNQSKGA 95
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: A0A2T1EQQ6_9CHRO (HNH endonuclease n=1 Tax=Chlorogloea sp. CCALA 695 TaxID=2107693 RepID=A0A2T1EQQ6_9CHRO) HSP 1 Score: 49.7 bits (117), Expect = 3.750e-6 Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = 1
Query: 22 REVITPGMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSR 213
R +I P +R +F + C C K T S A+++ DHI+P+ GG SNL LC +C++ +
Sbjct: 6 RILIPPEVRKYVFERDRYHCQSCGK--TNSEANLNVDHIIPLARGGKNDLSNLQTLCCTCNQRK 67
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI00109F5CC1 (HNH endonuclease n=1 Tax=Ningiella ruwaisensis TaxID=2364274 RepID=UPI00109F5CC1) HSP 1 Score: 48.1 bits (113), Expect = 3.160e-5 Identity = 22/61 (36.07%), Postives = 32/61 (52.46%), Query Frame = 1
Query: 43 MRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFE 225
+R I+ C C K ++ CDHI+P + GG SNL +LCV CH+ ++A E
Sbjct: 58 LRKIVLERDNHLCQICLKK-GKAVTGNQCDHIIPKSRGGTDSLSNLQILCVDCHRKKTAKE 117
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: A0A7C8B1L3_9DELT (HNH endonuclease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C8B1L3_9DELT) HSP 1 Score: 49.3 bits (116), Expect = 3.930e-5 Identity = 21/58 (36.21%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 46 RNIMFADQKGECNCCRKALTQSPAD-VDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRS 216
R +M + + + C+K T P D ++ DHI+PV+ GGP+ NL +LC +C++ +S
Sbjct: 150 RKVMLQVVRRDGHICQKCRTNVPDDEIEFDHIIPVSKGGPSSVENLRVLCRACNRKKS 207
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI001E3B84E6 (HNH endonuclease n=1 Tax=Burkholderia pseudomallei TaxID=28450 RepID=UPI001E3B84E6) HSP 1 Score: 46.6 bits (109), Expect = 3.960e-5 Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 1
Query: 130 DHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFER 228
DHI+P+ GG NLHLLC+ CHK ++A +R
Sbjct: 7 DHIIPLEQGGTNDDDNLHLLCIDCHKKKTATDR 39
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI001D005C04 (HNH endonuclease n=3 Tax=Burkholderia TaxID=32008 RepID=UPI001D005C04) HSP 1 Score: 46.6 bits (109), Expect = 4.140e-5 Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 1
Query: 130 DHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFER 228
DHI+P+ GG NLHLLC+ CHK ++A +R
Sbjct: 9 DHIIPLEQGGTNDDDNLHLLCIDCHKKKTATDR 41
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI0002ACE1D0 (HNH endonuclease n=1 Tax=Synechocystis sp. PCC 7509 TaxID=927677 RepID=UPI0002ACE1D0) HSP 1 Score: 47.0 bits (110), Expect = 4.270e-5 Identity = 20/61 (32.79%), Postives = 34/61 (55.74%), Query Frame = 1
Query: 31 ITPGMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSR 213
+ P +R +F C C K T + A+++ DHI+P+ GG SNL LC++C++ +
Sbjct: 9 LPPEVRKYVFERDLHHCQSCGK--TDTEANLNIDHIIPLARGGKNDLSNLQTLCITCNQRK 67
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI0016055CA5 (HNH endonuclease n=2 Tax=Burkholderia pseudomallei TaxID=28450 RepID=UPI0016055CA5) HSP 1 Score: 47.0 bits (110), Expect = 6.140e-5 Identity = 20/63 (31.75%), Postives = 34/63 (53.97%), Query Frame = 1
Query: 40 GMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFER 228
G++ + ++ C + + +VD HI+P+ GG NLHLLC+ CHK ++A +R
Sbjct: 15 GVKQRLRIRRRDNYTCQKCGIAVHAGEVD--HIIPLEQGGTNDDDNLHLLCIDCHKKKTATDR 75
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: A0A2Z4R776_MORBO (HNH endonuclease n=1 Tax=Moraxella bovis TaxID=476 RepID=A0A2Z4R776_MORBO) HSP 1 Score: 47.0 bits (110), Expect = 6.520e-5 Identity = 22/61 (36.07%), Postives = 34/61 (55.74%), Query Frame = 1
Query: 43 MRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFE 225
+R+ + A C CC + + ++ DHIV V GG +SNL +LC SCHK+++ E
Sbjct: 34 LRDEILARDSYTCQCCGRVGGR----LELDHIVNVAQGGTNDKSNLQILCHSCHKTKTQSE 90
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Match: UPI001604BF81 (HNH endonuclease n=4 Tax=pseudomallei group TaxID=111527 RepID=UPI001604BF81) HSP 1 Score: 46.6 bits (109), Expect = 8.670e-5 Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 1
Query: 130 DHIVPVTHGGPTCRSNLHLLCVSCHKSRSAFER 228
DHI+P+ GG NLHLLC+ CHK ++A +R
Sbjct: 43 DHIIPLEQGGTNDDDNLHLLCIDCHKKKTATDR 75 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7611.18821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7611.18821.1 >prot_Ecto-sp13_S_contig7611.18821.1 ID=prot_Ecto-sp13_S_contig7611.18821.1|Name=mRNA_Ecto-sp13_S_contig7611.18821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp GPTSPVRREVITPGMRNIMFADQKGECNCCRKALTQSPADVDCDHIVPVTback to top mRNA from alignment at Ecto-sp13_S_contig7611:3646..3873+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7611.18821.1 ID=mRNA_Ecto-sp13_S_contig7611.18821.1|Name=mRNA_Ecto-sp13_S_contig7611.18821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7611:3646..3873+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7611:3646..3873+ >mRNA_Ecto-sp13_S_contig7611.18821.1 ID=mRNA_Ecto-sp13_S_contig7611.18821.1|Name=mRNA_Ecto-sp13_S_contig7611.18821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7611:3646..3873+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |