mRNA_Ecto-sp13_S_contig7611.18820.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7611.18820.1
Unique NamemRNA_Ecto-sp13_S_contig7611.18820.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7611.18820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7611contigEcto-sp13_S_contig7611:1241..1785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size511
Hectar predicted targeting categorysignal peptide
Exons2
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.9113464-UTR-Ecto-sp13_S_contig7611:1240..13031681464030.9113464-UTR-Ecto-sp13_S_contig7611:1240..1303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7611 1241..1303 -
1681464030.9389963-UTR-Ecto-sp13_S_contig7611:1646..17851681464030.9389963-UTR-Ecto-sp13_S_contig7611:1646..1785Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7611 1647..1785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.9210901-CDS-Ecto-sp13_S_contig7611:1303..14201681464030.9210901-CDS-Ecto-sp13_S_contig7611:1303..1420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7611 1304..1420 -
1681464030.9300435-CDS-Ecto-sp13_S_contig7611:1454..16461681464030.9300435-CDS-Ecto-sp13_S_contig7611:1454..1646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7611 1455..1646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7611.18820.1prot_Ecto-sp13_S_contig7611.18820.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7611 1304..1646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7611.18820.1

>prot_Ecto-sp13_S_contig7611.18820.1 ID=prot_Ecto-sp13_S_contig7611.18820.1|Name=mRNA_Ecto-sp13_S_contig7611.18820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MRRLLGVGHFHVTNVLLELCFFFGVFSLVRSLLVLSLGIECHQVDGLRAV
VEAAVSQHTEKLVHSCSSFPCASTRKNSARSSTESLNMLHASQIALFLRR
TV*
back to top

mRNA from alignment at Ecto-sp13_S_contig7611:1241..1785-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7611.18820.1 ID=mRNA_Ecto-sp13_S_contig7611.18820.1|Name=mRNA_Ecto-sp13_S_contig7611.18820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=545bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7611:1241..1785- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTGCTTACGAACCGTTCTAACGGCATCAAGCCTCCGAGCGACGTCGTC
CGCACGCTTCCGGGCAGCGTCCTTAGCCTTTGAATAGCCTCTTGATCCTG
GATCACACCAGCGTCCTCCGCGAGCTCTTGTGTAGTCTCATGCGTCGTCT
CCTGGGCGTCGGTCACTTCCATGTCACCAACGTCCTCCTCGAGCTCTGTT
TTTTCTTCGGCGTCTTTAGTCTCGTGCGTAGTCTTTTGGTCTTGAGCCTT
GGCATCGAATGCCATCAGGTCGACGGATTGCGTGCGGTCGTTGAGGCCGC
TGTATCCCAGCATACGGAGAAGCTTGTCCATGTGGCGCAGCACCAGGTAG
TCGGACCGAAGGAAGTCGTGCTCATCCTTCCCCTGTGCCTCAACGAGGAA
GAACTCGGCTCGCTCCTCGACAGAGAGCTTGAACATGCTGCACGCGTCCC
AGATCGCCCTCTTCCTACGGAGAACGGTGTAGATTTCATCGATGGTCAGC
TCCTCCCTGAAGAGTTTCTGCACACTACAGTTCGTCATTGCGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7611:1241..1785-

>mRNA_Ecto-sp13_S_contig7611.18820.1 ID=mRNA_Ecto-sp13_S_contig7611.18820.1|Name=mRNA_Ecto-sp13_S_contig7611.18820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7611:1241..1785- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCGTCTCCTGGGCGTCGGTCACTTCCATGTCACCAACGTCCTCCT
CGAGCTCTGTTTTTTCTTCGGCGTCTTTAGTCTCGTGCGTAGTCTTTTGG
TCTTGAGCCTTGGCATCGAATGCCATCAGGTCGACGGATTGCGTGCGGTC
GTTGAGGCCGCTGTATCCCAGCATACGGAGAAGCTTGTCCATTCGTGCTC
ATCCTTCCCCTGTGCCTCAACGAGGAAGAACTCGGCTCGCTCCTCGACAG
AGAGCTTGAACATGCTGCACGCGTCCCAGATCGCCCTCTTCCTACGGAGA
ACGGTGTAG
back to top