mRNA_Ecto-sp13_S_contig76106.18817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76106.18817.1
Unique NamemRNA_Ecto-sp13_S_contig76106.18817.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: D8LRN9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN9_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.350e-18
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMDED 114
            YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMD+D
Sbjct:  428 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMDDD 465          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: A0A7S2XMQ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMQ9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.130e-11
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMD 108
            + +FVAKGREFKFFGD+FKCPECGAGK+KF+  S D
Sbjct:  456 FTIFVAKGREFKFFGDNFKCPECGAGKDKFVGRSDD 491          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: A0A835Z4L2_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4L2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.830e-10
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSM 105
            Y ++VAKGRE+KFFGDDFKCPECGA K KF E  +
Sbjct:  294 YTLYVAKGREWKFFGDDFKCPECGASKGKFQEKGV 328          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: L1IPJ7_GUITC (Rubredoxin-like domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPJ7_GUITC)

HSP 1 Score: 62.0 bits (149), Expect = 3.810e-10
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMD 108
            Y +FVAKGREFKFFGD+FKCP+CGAGK  F +++ +
Sbjct:  399 YTLFVAKGREFKFFGDNFKCPQCGAGKQYFKDNAAE 434          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: A0A7S0YQJ8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YQJ8_9CRYP)

HSP 1 Score: 60.8 bits (146), Expect = 9.740e-10
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMD 108
            Y +FVAKGREFKF+GDDFKC  CGAGK  F ++S++
Sbjct:  417 YTLFVAKGREFKFYGDDFKCAGCGAGKEAFKDNSLE 452          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: A0A8J6CDY1_DIALT (Rubredoxin-like domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDY1_DIALT)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-9
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMD 108
            Y +F A GREFKFFGDDFKCP+CGAGK+ F ++  +
Sbjct:  373 YTLFPAAGREFKFFGDDFKCPQCGAGKDAFTDAKTE 408          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: A0A448YYL6_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYL6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.820e-9
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMDE 111
            Y +F+AKGRE KFFGD+FKCPECGA K+KF    M +
Sbjct:  415 YTLFIAKGREAKFFGDNFKCPECGADKDKFEPKDMSD 451          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: A0A7S0NDR1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NDR1_9CRYP)

HSP 1 Score: 59.7 bits (143), Expect = 2.020e-9
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMD 108
            Y +FVAKGREFKFFGD+FKCP+CGA K  F +++ +
Sbjct:  252 YTLFVAKGREFKFFGDNFKCPQCGASKQYFKDNAAE 287          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: A0A7S0THQ3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0THQ3_HEMAN)

HSP 1 Score: 58.5 bits (140), Expect = 6.360e-9
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSM 105
            + +FVAKGREFKF+GDDFKC  CGAGK  F ++S+
Sbjct:  425 FTLFVAKGREFKFYGDDFKCQGCGAGKEDFKDNSL 459          
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Match: A0A7S2Z9V0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z9V0_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 2.210e-8
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 YKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMDE 111
            Y +F A GREFKFFG DF CP+CGA K+KF++ + +E
Sbjct:  352 YTLFPAAGREFKFFGSDFACPQCGASKDKFVDLNEEE 388          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76106.18817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRN9_ECTSI1.350e-1897.37Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2XMQ9_9STRA3.130e-1175.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A835Z4L2_9STRA1.830e-1071.43Rubredoxin-like domain-containing protein n=1 Tax=... [more]
L1IPJ7_GUITC3.810e-1066.67Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S0YQJ8_9CRYP9.740e-1066.67Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A8J6CDY1_DIALT1.810e-963.89Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A448YYL6_9STRA1.820e-964.86Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S0NDR1_9CRYP2.020e-963.89Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0THQ3_HEMAN6.360e-965.71Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2Z9V0_9RHOD2.210e-859.46Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76106contigEcto-sp13_S_contig76106:293..409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score81.6
Seed ortholog evalue8.2e-14
Seed eggNOG ortholog2880.D8LRN9
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2E1U7@1,2S947@2759
Cds size111
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.8229973-CDS-Ecto-sp13_S_contig76106:292..4031681464030.8229973-CDS-Ecto-sp13_S_contig76106:292..403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76106 293..403 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.8448863-UTR-Ecto-sp13_S_contig76106:403..4091681464030.8448863-UTR-Ecto-sp13_S_contig76106:403..409Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig76106 404..409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76106.18817.1prot_Ecto-sp13_S_contig76106.18817.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76106 293..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76106.18817.1

>prot_Ecto-sp13_S_contig76106.18817.1 ID=prot_Ecto-sp13_S_contig76106.18817.1|Name=mRNA_Ecto-sp13_S_contig76106.18817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
MFVAKGREFKFFGDDFKCPECGAGKNKFLESSMDED*
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mRNA from alignment at Ecto-sp13_S_contig76106:293..409-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76106.18817.1 ID=mRNA_Ecto-sp13_S_contig76106.18817.1|Name=mRNA_Ecto-sp13_S_contig76106.18817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76106:293..409- (Ectocarpus species13 EcNAP12_S_4_19m)
TACAAGATGTTCGTCGCCAAGGGGCGAGAATTCAAGTTTTTCGGGGACGA CTTCAAGTGCCCAGAGTGTGGAGCGGGGAAGAATAAGTTCTTGGAGTCGA GCATGGACGAGGATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76106:293..409-

>mRNA_Ecto-sp13_S_contig76106.18817.1 ID=mRNA_Ecto-sp13_S_contig76106.18817.1|Name=mRNA_Ecto-sp13_S_contig76106.18817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76106:293..409- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCGCCAAGGGGCGAGAATTCAAGTTTTTCGGGGACGACTTCAA
GTGCCCAGAGTGTGGAGCGGGGAAGAATAAGTTCTTGGAGTCGAGCATGG
ACGAGGATTAG
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