mRNA_Ecto-sp13_S_contig7607.18813.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7607.18813.1
Unique NamemRNA_Ecto-sp13_S_contig7607.18813.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7607.18813.1 vs. uniprot
Match: A0A6H5JCZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.630e-18
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = -1 
Query:    1 NGGITGYSRFDDGGGRGDDASSYGRTRSLTAVASSPEDTIRANRGDSEDFG 153
            NGGITGYSR DDGGGRGD AS YGRTRSLTAVASSPED IRANRGD EDFG
Sbjct:  654 NGGITGYSRSDDGGGRGDHASGYGRTRSLTAVASSPEDIIRANRGDIEDFG 704
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BLAST of mRNA_Ecto-sp13_S_contig7607.18813.1 vs. uniprot
Match: D7FIS9_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.690e-12
Identity = 41/51 (80.39%), Postives = 41/51 (80.39%), Query Frame = -1 
Query:    1 ITGYSRFDDGGGRG---DDASSYGRTRSLTAVASSPEDTIRANRGDSEDFG 144
            ITGYSRFDD        DDAS YGRTRSLTA ASSPEDTIRANRGDSEDFG
Sbjct:  955 ITGYSRFDDXXXXXXXRDDASGYGRTRSLTAEASSPEDTIRANRGDSEDFG 1005
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7607.18813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCZ2_9PHAE2.630e-1890.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIS9_ECTSI1.690e-1280.39Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7607contigEcto-sp13_S_contig7607:3052..3416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categorysignal anchor
Exons1
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.4694223-CDS-Ecto-sp13_S_contig7607:3051..34141681464030.4694223-CDS-Ecto-sp13_S_contig7607:3051..3414Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7607 3052..3414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7607.18813.1prot_Ecto-sp13_S_contig7607.18813.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7607 3052..3414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7607.18813.1

>prot_Ecto-sp13_S_contig7607.18813.1 ID=prot_Ecto-sp13_S_contig7607.18813.1|Name=mRNA_Ecto-sp13_S_contig7607.18813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
PEVLAVSSVGPDGVLGAAGDRRERPGSPIARGIITTAAAVVEPGVPGDAA
VAVIMIVVVVVVVVAAAAMRWGCLPSGAGRAPSPTVVVLLRLPLAPARPL
LARTGGGWGGWGGGGGTSYGR
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mRNA from alignment at Ecto-sp13_S_contig7607:3052..3416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7607.18813.1 ID=mRNA_Ecto-sp13_S_contig7607.18813.1|Name=mRNA_Ecto-sp13_S_contig7607.18813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7607:3052..3416+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGAAGTCCTCGCTGTCTCCTCTGTTGGCCCTGATGGTGTCCTCGGGGC
TGCTGGCGACCGCCGTGAGCGACCGGGTTCTCCCATAGCTCGAGGCATCA
TCACCACGGCCGCCGCCGTCGTCGAACCTGGAGTACCCGGTGATGCCGCC
GTTGCCGTCATCATGATCGTCGTCGTCGTCGTCGTCGTCGTCGCCGCCGC
CGCGATGCGTTGGGGCTGCCTCCCGAGTGGAGCGGGTCGTGCGCCGAGCC
CCACCGTCGTCGTACTCCTCCGACTTCCTCTCGCTCCCGCTCGACCTCTC
CTTGCCCGTACCGGCGGCGGCTGGGGTGGCTGGGGCGGCGGCGGCGGCAC
CTCCTACGGTAGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7607:3052..3416+

>mRNA_Ecto-sp13_S_contig7607.18813.1 ID=mRNA_Ecto-sp13_S_contig7607.18813.1|Name=mRNA_Ecto-sp13_S_contig7607.18813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7607:3052..3416+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGAAGTCCTCGCTGTCTCCTCTGTTGGCCCTGATGGTGTCCTCGGGGC
TGCTGGCGACCGCCGTGAGCGACCGGGTTCTCCCATAGCTCGAGGCATCA
TCACCACGGCCGCCGCCGTCGTCGAACCTGGAGTACCCGGTGATGCCGCC
GTTGCCGTCATCATGATCGTCGTCGTCGTCGTCGTCGTCGTCGCCGCCGC
CGCGATGCGTTGGGGCTGCCTCCCGAGTGGAGCGGGTCGTGCGCCGAGCC
CCACCGTCGTCGTACTCCTCCGACTTCCTCTCGCTCCCGCTCGACCTCTC
CTTGCCCGTACCGGCGGCGGCTGGGGTGGCTGGGGCGGCGGCGGCGGCAC
CTCCTACGGTAGA
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