mRNA_Ecto-sp13_S_contig7606.18811.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7606.18811.1
Unique NamemRNA_Ecto-sp13_S_contig7606.18811.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7606.18811.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 3.730e-53
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 1 
Query:    1 VHRALVILEPVETDVDSLKALLTVDKGTISKSRGGTAIGGVGTSSSSLPRSGLDIDGEERLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRPGWEK 303
            VHRALVILEPVETDVDSLKALLTVD GTISKSRGGTAIGGVGTSSSSLPRSGLDIDG+ERLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRPGWEK
Sbjct: 1375 VHRALVILEPVETDVDSLKALLTVDTGTISKSRGGTAIGGVGTSSSSLPRSGLDIDGDERLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRPGWEK 1475
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BLAST of mRNA_Ecto-sp13_S_contig7606.18811.1 vs. uniprot
Match: A0A6H5KWD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD2_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.890e-51
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 1 
Query:    1 VHRALVILEPVETDVDSLKALLTVDKGTISKSRGGTAIGGVGTSSSSLPRSGLDIDGEERLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRPGWEK 303
            VHRALVILEPVETDVDSLKALLTV KGTISKSRGGT IGGVGTSSSSLPRSGLDIDG+ERLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRPGWEK
Sbjct:  203 VHRALVILEPVETDVDSLKALLTV-KGTISKSRGGTTIGGVGTSSSSLPRSGLDIDGDERLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRPGWEK 302
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BLAST of mRNA_Ecto-sp13_S_contig7606.18811.1 vs. uniprot
Match: A0A4D9CU95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU95_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.800e-10
Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    1 VHRALVILEPVETDVDSLKALLTVDKGTISKSRGGTAIGGVGTSSSSLPRSGLDIDGEE-RLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRP 291
            VH AL++LEPV+ D+ +L+  +T                          R G  + GE+ + Q A +LLL T+W+V+AG KHGQ V+ RYKLAL+LRP
Sbjct: 2911 VHEALLLLEPVDVDLPTLRRRVT-----------------------DAVRHGTHLHGEDVKRQAATRLLLATDWMVQAGVKHGQQVLDRYKLALELRP 2985
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BLAST of mRNA_Ecto-sp13_S_contig7606.18811.1 vs. uniprot
Match: W7TMH7_9STRA (Serine threonine-protein kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMH7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.600e-9
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:    1 VHRALVILEPVETDVDSLKALLTVDKGTISKSRGGTAIGGVGTSSSSLPRSGLDIDGEE-RLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRP 291
            VH AL++LEP + D+ +L+  +T                          R G  + GE+ + Q A +LLL T+W+V+AG KHGQ V+ RYKLAL+LRP
Sbjct:  146 VHEALLLLEPNDVDLPTLRRRVT-----------------------DAVRHGTHLQGEDVKRQAATRLLLATDWMVQAGVKHGQQVLDRYKLALELRP 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7606.18811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FT24_ECTSI3.730e-5398.02Similar to ataxia telangiectasia and Rad3 related ... [more]
A0A6H5KWD2_9PHAE3.890e-5197.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CU95_9STRA5.800e-1039.80Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TMH7_9STRA3.600e-938.78Serine threonine-protein kinase n=1 Tax=Nannochlor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7606contigEcto-sp13_S_contig7606:2260..3716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score190.3
Seed ortholog evalue4.5e-46
Seed eggNOG ortholog2880.D7FT24
Model size306
KEGG koko:K06640
KEGG Pathwayko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
Exons3
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0890@2759
EC2.7.11.1
Cds size303
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.3001187-CDS-Ecto-sp13_S_contig7606:2261..23151681464030.3001187-CDS-Ecto-sp13_S_contig7606:2261..2315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7606 2262..2315 -
1681464030.3183167-CDS-Ecto-sp13_S_contig7606:2845..29941681464030.3183167-CDS-Ecto-sp13_S_contig7606:2845..2994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7606 2846..2994 -
1681464030.3293712-CDS-Ecto-sp13_S_contig7606:3616..37161681464030.3293712-CDS-Ecto-sp13_S_contig7606:3616..3716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7606 3617..3716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7606.18811.1prot_Ecto-sp13_S_contig7606.18811.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7606 2262..3716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7606.18811.1

>prot_Ecto-sp13_S_contig7606.18811.1 ID=prot_Ecto-sp13_S_contig7606.18811.1|Name=mRNA_Ecto-sp13_S_contig7606.18811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
VHRALVILEPVETDVDSLKALLTVDKGTISKSRGGTAIGGVGTSSSSLPR
SGLDIDGEERLQLARKLLLTTEWIVEAGQKHGQAVVARYKLALQLRPGWE
K
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mRNA from alignment at Ecto-sp13_S_contig7606:2260..3716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7606.18811.1 ID=mRNA_Ecto-sp13_S_contig7606.18811.1|Name=mRNA_Ecto-sp13_S_contig7606.18811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1457bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7606:2260..3716- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCACCGCGCCTTGGTGATTCTGGAGCCTGTGGAGACGGACGTGGACAG
CCTGAAAGCGCTGCTCACCGTTGACAAGGGTACTATCAGCAAGAGTCGTG
GTGAGTGCACCGCGAAACCGCTTACCGCGCTCCTCGGAGAGGAGTATAGT
GTTGAGTCGTTTGTTTCCACGCGAATGAGAGAGGATGCCAATTTCGACAA
CACGCCGTCCTCACGATACTGTACCCGGGCCAGGTCTCACCGATGAAAGT
ATGTAACGTGGCGCTGTGTCATCCTTGGTACAATGCTAACTACTAGCGGG
CACCCTCCACCCCTGGTGGGCGGGCACGCACTTCACGAGTCGTTTCGTTA
GTTCGTGTGCGAAGAGTTGTGTTTTGCTCGTTCAAAGTATGAGCACAAGT
ATGGTGCTGATGATGGAAGGTATGACACTATGCGTTGGGGGGCATTCTGT
GGACTTCCCTGTCAAAACCTTGAGGGAAACGTGAACGAGTACAGCAGCAA
GCTGATGCTTTCCGAAGTTTCAGTACAGTCTGAGGAAACTAGTTTCCTTG
TCGTTTGGTACGGCAGCTCTTAAGATGGAAGTAGCAACAGGGCTAAGCTA
CATTGCCGGGATGTTTGCTGTAGCGTGCCTATCCGGCACCCATCTCTGAC
CCGTGCGTGCTTGTGTACGTTTTGTGCGAAATTGGTGCTACTCTGCTGTT
CTCCTGGTCGACGATACGGCAGGTGGGACGGCGATCGGTGGTGTTGGCAC
TTCTTCCTCGTCGTTGCCGCGGAGCGGTCTGGATATTGACGGGGAGGAGA
GGTTGCAGCTAGCGCGCAAGCTTCTCCTCACGACGGAGTGGATCGTTGAG
GCTGGACAGAAGCACGGGCAGGTGAAGGAGGACATGACGCGCCGCATGTG
TATCCATGTGTCGAGTTTCGAGAGGCCTGATAATTTGTCGTTGGTGGGTG
TTGGAAAGGCGAGAGGGCGACAAAAAATATGTGAGGGAGGGTTGCTTTTT
ATTGTGAGTCTCTATTTTACCTGTTGGGAAAGGGGAGACGTCGCACGTTG
CAGATACCTCATCTGCCCGTTTATAGAGTGCATGTATAGAAACTCAATCT
GTCCGTGCAGGGAATGCATGGTGCATTTGTCTAAACCGTTTCGCGGATTG
CCTCTTCCCCATTTCGGCACTGCAAGTTGAGATGCTCGGTCTTGTTCACG
AGAGACGCAAGGCATGCAACCCATTTACACGGTTTTTCTTTTCATATTCT
GCCTCTTTCCTGTCTTCCTGTGTGTGTTTGTACGTTGCGTTTTTCGTTTC
ATGTTTGTTAACGGTTTTTCCTATTGCTGGTTGTCGTCGGCGTTACGGAC
GGGACGATGGACACTCGCGGCAACCCAACGATGCGATGCGGCACGACATA
GGCCGTGGTCGCCAGGTACAAGCTTGCTCTGCAGCTCCGGCCGGGCTGGG
AGAAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7606:2260..3716-

>mRNA_Ecto-sp13_S_contig7606.18811.1 ID=mRNA_Ecto-sp13_S_contig7606.18811.1|Name=mRNA_Ecto-sp13_S_contig7606.18811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7606:2260..3716- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCACCGCGCCTTGGTGATTCTGGAGCCTGTGGAGACGGACGTGGACAG
CCTGAAAGCGCTGCTCACCGTTGACAAGGGTACTATCAGCAAGAGTCGTG
GTGGGACGGCGATCGGTGGTGTTGGCACTTCTTCCTCGTCGTTGCCGCGG
AGCGGTCTGGATATTGACGGGGAGGAGAGGTTGCAGCTAGCGCGCAAGCT
TCTCCTCACGACGGAGTGGATCGTTGAGGCTGGACAGAAGCACGGGCAGG
CCGTGGTCGCCAGGTACAAGCTTGCTCTGCAGCTCCGGCCGGGCTGGGAG
AAG
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