mRNA_Ecto-sp13_S_contig7604.18810.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7604.18810.1
Unique NamemRNA_Ecto-sp13_S_contig7604.18810.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7604.18810.1 vs. uniprot
Match: D7FQF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF6_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.270e-121
Identity = 198/217 (91.24%), Postives = 202/217 (93.09%), Query Frame = 1 
Query:    1 QNGAGGGGGGLRETALSFTGFVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYSPHQQPVIILDTNPAEQRRGCTLHASEIELRQVPFGNLEAQRETKNSDDDDDDVAFRTGTQADPNKIRKQQHLKGSASRMERDTTTGTSIMTRAGTPSTNGEEEDSSDFCEEADQEVXXXXXXXXXXXXEE--DTERGGNTTR 645
            +NGAGGGGGGLRETALSFTG VSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLY PHQQPVIILDTNPAEQR GCTL ASEIELRQVPFGNLEAQRETKNSD +DDDV FRTG QADPNKI+KQQHLKGSASRMERDTTTGTSIMTRAGTPSTNGE+EDS DF EEADQE XXXXXXXXXXXX    D ERGGNTTR
Sbjct:    3 ENGAGGGGGGLRETALSFTGIVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYYPHQQPVIILDTNPAEQRSGCTLRASEIELRQVPFGNLEAQRETKNSDVNDDDVGFRTGAQADPNKIQKQQHLKGSASRMERDTTTGTSIMTRAGTPSTNGEQEDSCDFGEEADQEXXXXXXXXXXXXXXXXXDNERGGNTTR 219
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BLAST of mRNA_Ecto-sp13_S_contig7604.18810.1 vs. uniprot
Match: A0A6H5JCN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN9_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 3.610e-119
Identity = 195/218 (89.45%), Postives = 201/218 (92.20%), Query Frame = 1 
Query:    1 QNGAGGGGGGLRETALSFTGFVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYSPHQQPVIILDTNPAEQRRGCTLHASEIELRQVPFGNLEAQRETKNSDDDDDDVAFRTGTQADPNKIRKQQHLKGSASRMERDTTTGTSIMTRAGTPSTNGEEEDSSDFCEEADQ---EVXXXXXXXXXXXXEEDTERGGNTTR 645
            +NGAGGGGGGLRETALSFTG +SIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYSPH QPVIILDTN AE+R G TLHASEIELRQVPFGNLEAQRETKNSDD DDDV F TG QADPNKIRKQQHLKGSAS+MERDTTTGTSIMTRAGTPSTNGE+EDSSDF EEADQ   E XXXXXXXXXXXX  DTERGG TT+
Sbjct:    3 ENGAGGGGGGLRETALSFTGIISIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYSPHHQPVIILDTNSAEKRSGYTLHASEIELRQVPFGNLEAQRETKNSDDGDDDVVFLTGAQADPNKIRKQQHLKGSASQMERDTTTGTSIMTRAGTPSTNGEQEDSSDFGEEADQVVDEEXXXXXXXXXXXXXXDTERGGKTTK 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7604.18810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQF6_ECTSI1.270e-12191.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCN9_9PHAE3.610e-11989.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7604contigEcto-sp13_S_contig7604:2205..2852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size648
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006310.1
Cds size648
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464030.2698283-CDS-Ecto-sp13_S_contig7604:2204..28521681464030.2698283-CDS-Ecto-sp13_S_contig7604:2204..2852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7604 2205..2852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7604.18810.1prot_Ecto-sp13_S_contig7604.18810.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7604 2205..2852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7604.18810.1

>prot_Ecto-sp13_S_contig7604.18810.1 ID=prot_Ecto-sp13_S_contig7604.18810.1|Name=mRNA_Ecto-sp13_S_contig7604.18810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
QNGAGGGGGGLRETALSFTGFVSIITFCCCSTMSCVALCIKLASWMFGHR
GRRQRVPLLPHEQQNDGEAEEQLYSPHQQPVIILDTNPAEQRRGCTLHAS
EIELRQVPFGNLEAQRETKNSDDDDDDVAFRTGTQADPNKIRKQQHLKGS
ASRMERDTTTGTSIMTRAGTPSTNGEEEDSSDFCEEADQEVDEAEEEYKE
RQKEEDTERGGNTTR*
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mRNA from alignment at Ecto-sp13_S_contig7604:2205..2852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7604.18810.1 ID=mRNA_Ecto-sp13_S_contig7604.18810.1|Name=mRNA_Ecto-sp13_S_contig7604.18810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7604:2205..2852- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAATGGAGCTGGCGGTGGTGGAGGTGGGCTCCGAGAGACTGCGTTGTC
CTTCACGGGATTCGTTTCCATCATCACCTTCTGCTGCTGCTCGACGATGT
CGTGTGTGGCGTTGTGCATCAAGCTTGCCAGCTGGATGTTCGGGCACCGC
GGGAGGCGGCAGAGGGTTCCCTTGCTACCCCACGAGCAGCAAAACGATGG
CGAGGCCGAAGAACAACTCTACTCCCCGCACCAACAACCGGTCATCATCC
TGGACACCAATCCCGCAGAGCAGCGAAGGGGCTGCACCCTGCACGCTTCG
GAAATCGAGCTTCGACAGGTGCCTTTCGGAAACTTAGAGGCGCAACGGGA
GACAAAGAACTCAGACGATGACGACGACGACGTTGCATTTAGGACGGGAA
CACAAGCAGACCCCAACAAGATTCGGAAGCAGCAGCACCTCAAGGGCAGC
GCCTCACGGATGGAGCGTGATACGACGACGGGTACGTCGATCATGACGAG
GGCTGGAACACCGTCGACGAACGGCGAAGAGGAAGATAGCAGTGATTTTT
GCGAGGAAGCAGACCAGGAGGTGGATGAGGCGGAGGAGGAGTATAAGGAG
AGGCAGAAGGAGGAAGATACCGAGCGCGGCGGGAATACAACAAGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7604:2205..2852-

>mRNA_Ecto-sp13_S_contig7604.18810.1 ID=mRNA_Ecto-sp13_S_contig7604.18810.1|Name=mRNA_Ecto-sp13_S_contig7604.18810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7604:2205..2852- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAATGGAGCTGGCGGTGGTGGAGGTGGGCTCCGAGAGACTGCGTTGTC
CTTCACGGGATTCGTTTCCATCATCACCTTCTGCTGCTGCTCGACGATGT
CGTGTGTGGCGTTGTGCATCAAGCTTGCCAGCTGGATGTTCGGGCACCGC
GGGAGGCGGCAGAGGGTTCCCTTGCTACCCCACGAGCAGCAAAACGATGG
CGAGGCCGAAGAACAACTCTACTCCCCGCACCAACAACCGGTCATCATCC
TGGACACCAATCCCGCAGAGCAGCGAAGGGGCTGCACCCTGCACGCTTCG
GAAATCGAGCTTCGACAGGTGCCTTTCGGAAACTTAGAGGCGCAACGGGA
GACAAAGAACTCAGACGATGACGACGACGACGTTGCATTTAGGACGGGAA
CACAAGCAGACCCCAACAAGATTCGGAAGCAGCAGCACCTCAAGGGCAGC
GCCTCACGGATGGAGCGTGATACGACGACGGGTACGTCGATCATGACGAG
GGCTGGAACACCGTCGACGAACGGCGAAGAGGAAGATAGCAGTGATTTTT
GCGAGGAAGCAGACCAGGAGGTGGATGAGGCGGAGGAGGAGTATAAGGAG
AGGCAGAAGGAGGAAGATACCGAGCGCGGCGGGAATACAACAAGATAG
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