prot_Ecto-sp13_S_contig7600.18808.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7600.18808.1
Unique Nameprot_Ecto-sp13_S_contig7600.18808.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length726
Homology
BLAST of mRNA_Ecto-sp13_S_contig7600.18808.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 1016 bits (2628), Expect = 0.000e+0
Identity = 646/729 (88.61%), Postives = 658/729 (90.26%), Query Frame = 0
Query:    1 MSIAERDRLRAPHPPPSGDGGERGEGDRQQELLHPYPADPTFDELGYKVLLYLKRCFRGRVLGASEPLSAVDTAKKTRKGLLHLLVRPALMQSSSSSIGAAGVAAVDG--DGRRAGGSSKPWGGDRRWQEALFPYLAVLLYVDAGATIDVLSVAMDSPDATFRREVPAAAXXXXXXXXXXXXXXXXXXXXXXXA-VPPTLHREFSSSSSSFAAASDVARGGGPAVGEATGSGGGGVWGRRLGRRGRAARAVGWAAGAPVAAGGTEARTKVVEGEEVDGVWGETAAAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASXXXXXXXXXXXXXXXXXXXXXXXXVHGAQPQXXXXXXXXXXXXXEGDGDDGLTAEAAEQRSSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXX-HEGPDPAVDAQARLVTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAVTLGEQSGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAAAPSSGNSSSKPRQAKHGDGSHPRTHGGGEEGDKELLSQKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPSEQQQGVSSSPSPPRSGGPDTARGRSGWGGGQQGVRHHRHRGDDRVGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTG 725
            MSIAERDRLRAP+PPP GDGG+ GEG RQQ+LLHPYPADPTFDELGYKVLLYLKRCFRGRVLGA+EPLSAVDTAK  R  LLHLLVRPALMQSSSSS+GA+GVAA D    GRR GGSSKPWGGDRRWQEA FP+LAVLLYVDAGATIDVLSVAMDSPDATFRREVPAAAXXXXXXXXXXXXXXXXXXXXXXX  VPPTLHREFSSSSSS                              LGRRGRAARAVGWA GAPV+AGG E RTKVVEGEEVDGVWG TAAAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXX G GDDGLTAEAA Q+SSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXX HEGPDPAVDAQARLVTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAVTLGEQ GFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIA AATAAAPSSGN+SSKPRQAKHGD S P THGGGEEG+KELLS+KRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPSEQQQGVSSSPSPP SGGPD ARGRSGWGGGQQGVRHH HR DDRV VGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTG
Sbjct: 1186 MSIAERDRLRAPNPPPCGDGGQGGEGYRQQQLLHPYPADPTFDELGYKVLLYLKRCFRGRVLGAAEPLSAVDTAK-ARASLLHLLVRPALMQSSSSSLGASGVAAADAATGGRRMGGSSKPWGGDRRWQEAPFPHLAVLLYVDAGATIDVLSVAMDSPDATFRREVPAAAXXXXXXXXXXXXXXXXXXXXXXXXXVPPTLHREFSSSSSS------------------------------LGRRGRAARAVGWATGAPVSAGGPETRTKVVEGEEVDGVWGGTAAAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXGYGDDGLTAEAAAQQSSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXXHEGPDPAVDAQARLVTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIAHAATAAAPSSGNASSKPRQAKHGDRSPPGTHGGGEEGNKELLSEKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPSEQQQGVSSSPSPPGSGGPDIARGRSGWGGGQQGVRHH-HR-DDRVDVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTG 1878          
BLAST of mRNA_Ecto-sp13_S_contig7600.18808.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 818 bits (2114), Expect = 1.570e-275
Identity = 567/728 (77.88%), Postives = 576/728 (79.12%), Query Frame = 0
Query:    1 MSIAERDRLRAPHPPPSGDGGERGEGDRQQE----LLHPYPADPTFDELGYKVLLYLKRCFRGRVLGASEPLSAVDTAKKTRKGLLHLLVRPALMQSSSSSIGAAGVAAVDGDGRRAGGSSKPWGGDRRWQEALFPYLAVLLYVDAGATIDVLSVAMDSPDATFRREVPAAAXXXXXXXXXXXXXXXXXXXXXXXAVPPTLHREFSSSSSSFAAASDVARGGGPAVGEATGSGGGGVWGR-------RLGRRGRAARAVGWAAGAP---VAAGGTEARTKVVEGEEVDGVWGETAAAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASXXXXXXXXXXXXXXXXXXXXXXXXVHGAQPQXXXXXXXXXXXXXEGDGDDGLTAEAAEQRSSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXX-HEGPDPAVDAQARLVTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAVTLGEQSGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAAAPSSGNSSSKPRQAKHGDGSHPRTHGGGEEGDKELLSQKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPSEQQQGVSSSPSPPRSGGPDTARGRSGWGGGQQGVRHHRHRGDDRVGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRP 713
            MSIAERDRLRAP PP                    LLHPYPADPTFDELGYKVLLYLKRCFRGRVLGASEPLSA DTAK  R  LLHLLVRPALMQSSSSS+GAAGVAA D  GRRAGGS +PWGGDRRWQEALFPYLAVLLYVDAGATIDVLSVAMDSPDATF REVPAAAXXXXXXXXXXXXXXXXXXXXXXXAVPPTLHRE SS         D  RGGGPA GEA         G        R GR G  A        A    V AGGTEARTKVVEGEEVDGVWG TAAAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAAS XXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXX                  LLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXX HEGPDPAVDAQARLVTLLERVPLSLVDR+RLLPLAEKSGFFRAAVILLKAAVTLGEQ GF LEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAAAPSSGN+SSKPRQAKHGDGS P THGGG EG+ ELLS+KRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPP++                                      R DDRVGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVR+ P
Sbjct:  972 MSIAERDRLRAPRPPXXXXXXXXXXXXXXXXXXXLLLHPYPADPTFDELGYKVLLYLKRCFRGRVLGASEPLSAADTAK-ARASLLHLLVRPALMQSSSSSLGAAGVAAADAGGRRAGGSKRPWGGDRRWQEALFPYLAVLLYVDAGATIDVLSVAMDSPDATFHREVPAAAXXXXXXXXXXXXXXXXXXXXXXXAVPPTLHRELSSXXXXXXXXXDRERGGGPAGGEAXXXXXXXXXGEXXXXXXXRGGRWGGGANXXXXXXXAALDIVLAGGTEARTKVVEGEEVDGVWGGTAAAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQLEAASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXXHEGPDPAVDAQARLVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGFNLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAAAPSSGNTSSKPRQAKHGDGSPPGTHGGGGEGEAELLSEKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-DDRVGVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRYSP 1696          
BLAST of mRNA_Ecto-sp13_S_contig7600.18808.1 vs. uniprot
Match: A0A7S2R8B2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8B2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.820e-7
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 0
Query:  446 AQARLVTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAV-TLGEQSGFTLEQ---FARIVRCYLQDSEDAFRSQVFGFIRQE 527
            AQ  ++ LL+ +P S  DR+ ++ + EK+   RAA+ L K  V TL E+S    +    F R++ CYL D+E+ FR QVF ++++E
Sbjct:   14 AQDEIIALLKALPRSCFDRNEVIKVVEKARMSRAALFLHKGGVSTLFEESAALEDSSYHFMRVIDCYLDDTEEDFRQQVFEYLKKE 99          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7600.18808.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE0.000e+088.61Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI1.570e-27577.88Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2R8B2_9STRA6.820e-738.37Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025941Vacuolar protein sorting-associated protein 8, central domainPFAMPF12816Vps8coord: 43..152
e-value: 6.9E-12
score: 45.3
NoneNo IPR availablePANTHERPTHR12616VACUOLAR PROTEIN SORTING VPS41coord: 395..722
coord: 39..160
NoneNo IPR availablePANTHERPTHR12616:SF8VACUOLAR PROTEIN SORTING 8 HOMOLOG (S. CEREVISIAE)coord: 395..722
coord: 39..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7600contigEcto-sp13_S_contig7600:868..7143 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7600.18808.1mRNA_Ecto-sp13_S_contig7600.18808.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7600 847..7143 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7600.18808.1 ID=prot_Ecto-sp13_S_contig7600.18808.1|Name=mRNA_Ecto-sp13_S_contig7600.18808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=726bp
MSIAERDRLRAPHPPPSGDGGERGEGDRQQELLHPYPADPTFDELGYKVL
LYLKRCFRGRVLGASEPLSAVDTAKKTRKGLLHLLVRPALMQSSSSSIGA
AGVAAVDGDGRRAGGSSKPWGGDRRWQEALFPYLAVLLYVDAGATIDVLS
VAMDSPDATFRREVPAAAAAAATATAAGATSLSGDGSGLAVAVPPTLHRE
FSSSSSSFAAASDVARGGGPAVGEATGSGGGGVWGRRLGRRGRAARAVGW
AAGAPVAAGGTEARTKVVEGEEVDGVWGETAAAVEAENLCPSRRSVVEAV
TSVLAPHLSDQAEQLEAASSSSGAPSSEGPGSNNGGGLSAAAFVHGAQPQ
PPEKATVAAKKDEEGDGDDGLTAEAAEQRSSLLRDRDGQEWWAAARPHLF
GFVAKYLELSLVSVGPRLTNAVLVSVATGSGGGGGGHEGPDPAVDAQARL
VTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAVTLGEQSGFTLEQ
FARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAAAPSSGNSSSKPRQAK
HGDGSHPRTHGGGEEGDKELLSQKRDVVLEKLPQLMELDKAEAVFTVGEA
FGGDHKAALAALSATTTLQFDYLDALLRPPSEQQQGVSSSPSPPRSGGPD
TARGRSGWGGGQQGVRHHRHRGDDRVGVGGVRGPGSRPSSGLAAGLDDGD
RSLHVRLLVRFRPYEVYPFLSSSTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025941Vps8_central_dom