mRNA_Ecto-sp13_S_contig760.18806.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig760.18806.1 vs. uniprot
Match: D8LSM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM5_ECTSI) HSP 1 Score: 1182 bits (3057), Expect = 0.000e+0 Identity = 1118/1368 (81.73%), Postives = 1133/1368 (82.82%), Query Frame = 3
Query: 261 MVKDKAKAYISKLNEEKAALAKELQDKSKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVSGHDPQANGGSAGADSPSEETVAAARAAAEEEIKSLKRELQRVSDALEACEASRTETETLLAETKRAAEEASERVTAAAGERDDALARAETLQASLEAATATAAAAESAARQKAAVELEEVRRGSASDLEREQAAVRALEEXXXXXXXXXXSTAEGFRXXXXXXXXXXXXXGTTAAESLAKAVAEATEAAEKEASDAAXXXXXXXXXXXXXXXXXXXXXXSTTEELRSKLAESEAARMEESXXXXXXXXXXXXXXXXXXXXXXXXXXXAARREEALRAQVAGMEAEVASLREELRVAEEXXXVAXXXXXXXXXXXXXXXXXXEGSCAASGEPPVAAVDHTDEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----TAGTEEEMEALRERLRVAEQETADLSAELSSEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATQAAKDQETAEEATXXXXXXXXXXXXXXXARRETEKALEDSDKQAEELSSRLMGALEEREEGRRREAVAXXXAGRLREELEEATGELERTRAEVKSRDAAADKSASEWAGRVQEVEEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVLEDSTATGAKLSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKRVDVLRDAIEKVEAERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLATAQDELGREREAIAERKREMQAYAEAMAREGETLRAATKEAQAIAARATAAESESKSSVALVRREGEAAASSLRQALEKQAAEASRTVAALEERNAALQSETSRLRHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSGGASSMIGGGPEACIFSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVGXXXXXXXXXXXXXXXXXXX-PAYSTLEMGSRRLVEGGESESDAATPMSDDLGRPGKSVPGNKAVV 4349
MVKDKAK YISKLNEEKAALAKELQDKS V XXXXXXXXXXXXXXXXXXXXXXX QVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVSGHDPQANGGSAGADSPSEE VAAARAAAEEEIKSLK ELQRVS+ALEACEASRTETETLLAETK+AAEEA+ RVTAAAG RDDALARAETLQASLEA LEEVRRGSASDLEREQAAVRALEE XXXXXXXX XXXXXXXXXXXXX KEA+ A XXXXXXXXXXXXXXXXXXST EELRSKLAES XXXXXXXXXXXXXXXXXXXXXXXXXX AARREEALRAQVAGME EVASLREELRVAEEXXX XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TAGTEEEMEA+RERLRVAEQETADLSAELSSEKEXXXXXXXXXXX A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EATQAAKDQETAE XXXXXXXXXXXXXXXARRETEKALEDSDKQAEELSSRLMGALEEREEGRRREA AGRLREEL ATGELER RAEVK RDAAAD+SAS WA RV+E+EEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RDAAAADVA+SKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRL AQDELGREREAIAERK+EMQAYA IAARATAAESESKS VALVRR+GEAAASSLRQALEKQAAEASRTVAALEERNAAL+SET RLRHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSG S MIGG PE SSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVG XXXX PAYSTLEMGSRRLVEGGESESDAATPMSD+LG+PGKSVPG+KAVV
Sbjct: 1 MVKDKAKTYISKLNEEKAALAKELQDKSNVLAGVXXXXXXXXXXXXXXXXXXXXXXXDQVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVSGHDPQANGGSAGADSPSEEAVAAARAAAEEEIKSLKGELQRVSEALEACEASRTETETLLAETKQAAEEATGRVTAAAGGRDDALARAETLQASLEAXXXXXXXXXXXXXXXXXXXLEEVRRGSASDLEREQAAVRALEERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAAADASDAAXXXXXXXXXXXXXXXXXXSTIEELRSKLAESXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXEAARREEALRAQVAGMEVEVASLREELRVAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAATAGTEEEMEAIRERLRVAEQETADLSAELSSEKEXXXXXXXXXXX-----------------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEATQAAKDQETAEXXXXXXXXXXXXXXXXXXARRETEKALEDSDKQAEELSSRLMGALEEREEGRRREAAVAKEAGRLREELAGATGELERARAEVKGRDAAADESASVWASRVKELEEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDAAAADVASSKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLTAAQDELGREREAIAERKKEMQAYAXXXXXXXXXXXXXXXXXXXIAARATAAESESKSCVALVRRDGEAAASSLRQALEKQAAEASRTVAALEERNAALESETLRLRHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSGSGSGMIGGAPEDAS-SSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVGVGATATTSGGRRIRAXXXXGPAYSTLEMGSRRLVEGGESESDAATPMSDNLGQPGKSVPGDKAVV 1329
BLAST of mRNA_Ecto-sp13_S_contig760.18806.1 vs. uniprot
Match: A0A6H5KJQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ3_9PHAE) HSP 1 Score: 1156 bits (2990), Expect = 0.000e+0 Identity = 1067/1378 (77.43%), Postives = 1080/1378 (78.37%), Query Frame = 3
Query: 219 MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKSKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVSGHDPQANGGSAGADSPSEETVAAARAAAEEEIKSLKRELQRVSDALEACEASRTETETLLAETKRAAEEASERVTAAAGERDDALARAETLQASLEAATATAAAAESAARQKAAVELEEVRRGSASDLEREQAAVRALEEXXXXXXXXXXSTAEGFRXXXXXXXXXXXXXGTTAAESLAKAVAEATEAAEKEASDAAXXXXXXXXXXXXXXXXXXXXXXSTTEELRSKLAESEAARMEESXXXXXXXXXXXXXXXXXXXXXXXXXXXAARREEALRAQVAGMEAEVASLREELRVAEEXXXVAXXXXXXXXXXXXXXXXXXEGSCAASGEPPVAAVDHTDEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTEEEMEALRERLRVAEQETADLSAELSSEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATQAAKDQETAEEATXXXXXXXXXXXXXXXARRETEKALEDSDKQAEELSSRLMGALEEREEGRRREAVAXXXAGRLREELEEATGELERTRAEVKSRDAAADKSASEWAGRVQEVEEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVLEDSTATGAKLSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKRVDVLRDAIEKVEAERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLATAQDELGREREAIAERKREMQAYAEAMAREGETLRAATKEAQAIAARATAAESESKSSVALVRREGEAAASSLRQALEKQAAEASRTVAALEERNAALQSETSRLRHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSGGASSMIGGGPEACIFSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVGXXXXXXXXXXXXXXXXXXX-PAYSTLEMGSRRLVEGGESESDAATPMSDDLGRPGKSVPGNKAVV 4349
MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKS V XXXXXXXXXXXXXXXXXXXXXXXX QVKDRDGRLLRA+ELLQAKLAAKDEELQAAQAEAKTLRDQAESAA GH PQAN GS GADSPSEE VA RAAAEEE+KSLK ELQRVS+ALEACEASRTETETLLAETK+AA AA ERDDALARAETLQASLE A XXXXXXXXXXSTAEG R XXXXXXXXX XXXXXXXXXXXXXXXXXXX ST EELRSKLAESEAA MEES XXXX AARREEALRAQV GMEAEVASLREELRVAEE +A E SCAASGE PVAAVD TD XXXXXXXXXXXXX XXXXXXXXXXXX EEMEA+R RLRVAEQETADLSAELSS K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ATQAAKDQETAEEA XXXXXXXXXXXXXXX RETEKALEDSDKQAEELSSRLMGALEER XXX AGAVEAVKALEDALTQREQEAERLTEE AGLRKETSLVKAELEARGEALRQAKLDLASVLEDSTATGAKLSEA XXXXXXXXXXXXXXXXXXXXXXX X TVSKRVDVLRDAIEKVEAERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLA AQDELGRE+EAIAERK+EMQAYAEAMAREGETLR ATKEAQAIAARATAAESESKS VALVRREGEA ASSLRQALEKQAAEASR VAALEERNAAL+SETSRL+HLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQ+QSSDLSRVALMGGSGGASSMIGGGPE SSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSR XXXXXXXXXXXXXXXXXXX PAYSTLEMGSRRLVEGGESESDAATP+SDDL RPGKSVPG+KAVV
Sbjct: 1 MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKSNVLAXXXXXXXXXXXXXXXXXXXXXXXXEDQVKDRDGRLLRAEELLQAKLAAKDEELQAAQAEAKTLRDQAESAAXXXGHXPQANRGSXGADSPSEEAVAXXRAAAEEEMKSLKGELQRVSEALEACEASRTETETLLAETKQAAAXXXXXXXXAARERDDALARAETLQASLE----------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXSTAEGLRAELAXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXLQESTIEELRSKLAESEAAEMEESGDKAEXXXXALSQAKAGRAEAESE---AARREEALRAQVVGMEAEVASLREELRVAEEEKEIAAAAATAAEKDTDGTGSSAERSCAASGELPVAAVDSTD-------GXXXXXXXXXXXXXDTKEEVDALVGRVAALEEELAASKLALHXXXXXXXXXXXXXXXXXEEMEAIRGRLRVAEQETADLSAELSSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQAAKDQETAEEAXXXXXXXXXXXXXXXXXXRETEKALEDSDKQAEELSSRLMGALEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVEAVKALEDALTQREQEAERLTEEVAGLRKETSLVKAELEARGEALRQAKLDLASVLEDSTATGAKLSEARSSXXXXXXXXXXXXXXXXXXXXXXXGLKXAVIETNETVSKRVDVLRDAIEKVEAERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLAAAQDELGREKEAIAERKKEMQAYAEAMAREGETLRTATKEAQAIAARATAAESESKSIVALVRREGEATASSLRQALEKQAAEASRAVAALEERNAALESETSRLQHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQRQSSDLSRVALMGGSGGASSMIGGGPEDAN-SSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRXXXXXXXXXXXXXXXXXXXXXXXPAYSTLEMGSRRLVEGGESESDAATPVSDDLSRPGKSVPGDKAVV 1325 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig760.18806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig760.18806.1 >prot_Ecto-sp13_S_contig760.18806.1 ID=prot_Ecto-sp13_S_contig760.18806.1|Name=mRNA_Ecto-sp13_S_contig760.18806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1378bp MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKSKVLAGVKDback to top mRNA from alignment at Ecto-sp13_S_contig760:1230..17316- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig760.18806.1 ID=mRNA_Ecto-sp13_S_contig760.18806.1|Name=mRNA_Ecto-sp13_S_contig760.18806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=16087bp|location=Sequence derived from alignment at Ecto-sp13_S_contig760:1230..17316- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig760:1230..17316- >mRNA_Ecto-sp13_S_contig760.18806.1 ID=mRNA_Ecto-sp13_S_contig760.18806.1|Name=mRNA_Ecto-sp13_S_contig760.18806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig760:1230..17316- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |