mRNA_Ecto-sp13_S_contig76.18804.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76.18804.1
Unique NamemRNA_Ecto-sp13_S_contig76.18804.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76.18804.1 vs. uniprot
Match: D7FSX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 6.140e-38
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 3 
Query:  282 EGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASYRGSFAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFFNGMYDNGRAKVALR 623
            EGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASYRGSFAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFFNGMYDNGRAKVALR
Sbjct:   18 EGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASYRGSFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFFNGMYDNGRAKVALR 131
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BLAST of mRNA_Ecto-sp13_S_contig76.18804.1 vs. uniprot
Match: A0A7S4A6S0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6S0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.080e-15
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 
Query:  216 EQAPPEPETGEGKFVFPNGAVYEGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASYRGSF 440
            E + PE E+GEG F F +G+ YEGQY   DGV++RNG+GT T G +   GEW  D +HG G   F+S A+Y G F
Sbjct:   57 EPSEPEEESGEGLFTFVDGSRYEGQYATEDGVRRRNGYGTLTQGPETSEGEWVSDKLHGVGRCAFASGATYEGGF 131
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BLAST of mRNA_Ecto-sp13_S_contig76.18804.1 vs. uniprot
Match: A0A7S3SY57_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SY57_9SPIT)

HSP 1 Score: 69.3 bits (168), Expect = 8.220e-11
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 3 
Query:  210 DEEQAPPEPETGEGKFVFPNGAVYEGQYIVIDGVKKRNGFGTHTNGKDK---YIGEWQLDSMHGQGEMIFSS 416
            +E+  P EP+ G+G F+ P+G+ Y+G +I++DGV++R+G G + +G  K   Y GEWQ D MHG+G   ++S
Sbjct:   12 EEDSEPFEPQEGKGAFLLPDGSKYDGDWIIVDGVRQRHGHGLYIDGIVKGQSYQGEWQNDKMHGRGVFRYAS 83
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BLAST of mRNA_Ecto-sp13_S_contig76.18804.1 vs. uniprot
Match: A0A7S0SWQ0_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWQ0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.940e-8
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 3 
Query:  243 GEGKFVFPNGAVYEGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDA 422
            G+  F F NG+ YEG++I ID VK R+GFG      +KY G W  D+M G GE  F+S A
Sbjct:   19 GKSIFNFSNGSKYEGEWISIDNVKYRHGFGIFIGNNEKYEGNWDNDNMDGYGEYTFASGA 78
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BLAST of mRNA_Ecto-sp13_S_contig76.18804.1 vs. uniprot
Match: A0A5A8CPM1_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CPM1_CAFRO)

HSP 1 Score: 61.2 bits (147), Expect = 6.230e-8
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:  249 GKFVFPNGAVYEGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASYRG 434
            GKFVF +GAVYEG++       +R+G G++++G + Y G W+ D MHG+GE   ++ A++ G
Sbjct:   24 GKFVFGDGAVYEGEFRETSAGVQRHGEGSYSDGAETYTGSWESDEMHGRGEYRSATGATFVG 85
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BLAST of mRNA_Ecto-sp13_S_contig76.18804.1 vs. uniprot
Match: A0A0D2LVS0_9CHLO (MORN repeat-containing protein 2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LVS0_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 5.540e-6
Identity = 32/92 (34.78%), Postives = 45/92 (48.91%), Query Frame = 3 
Query:  237 ETGEGKFVFPNGAVYEGQYIVI-------DGVKK---------------------RNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASY 428
            E+G G+F +P+G+ YEG Y V+       +G +K                     R+G GT+T G   Y G+WQ D+M GQG   F+S A Y
Sbjct:   21 ESGSGRFFYPDGSTYEGDYRVVNVLPAAPEGPRKSSXXXXXXXXXXXPAEPPKRVRHGNGTYTCGAYSYAGDWQEDAMQGQGRFQFASGAVY 112
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BLAST of mRNA_Ecto-sp13_S_contig76.18804.1 vs. uniprot
Match: A0A2K1KBC7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KBC7_PHYPA)

HSP 1 Score: 54.3 bits (129), Expect = 2.850e-5
Identity = 30/90 (33.33%), Postives = 44/90 (48.89%), Query Frame = 3 
Query:  240 TGEGKFVFPNGAVYEGQYIVI----DGV------------------------KKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDAS 425
            +G GKF +P GA YEG ++V+    +GV                        ++R+G G + +G  +Y GEW+ D MHGQG   + S AS
Sbjct:   27 SGAGKFFYPTGATYEGDWVVVAEVDEGVPATPXXXXXXXXXXHPPLEQMRPNRQRHGKGVYIDGNYQYNGEWKYDKMHGQGCFKYESGAS 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76.18804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FSX9_ECTSI6.140e-3899.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4A6S0_9STRA3.080e-1550.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3SY57_9SPIT8.220e-1143.06Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S0SWQ0_9STRA1.940e-848.33Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A5A8CPM1_CAFRO6.230e-841.94Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A0D2LVS0_9CHLO5.540e-634.78MORN repeat-containing protein 2 n=1 Tax=Monoraphi... [more]
A0A2K1KBC7_PHYPA2.850e-533.33Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76contigEcto-sp13_S_contig76:2193..5366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score76.3
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog157072.XP_008862129.1
Model size902
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-27_006760.1
Cds size438
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76.18804.1prot_Ecto-sp13_S_contig76.18804.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76 2469..4555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.785883-UTR-Ecto-sp13_S_contig76:2192..24681681464028.785883-UTR-Ecto-sp13_S_contig76:2192..2468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig76 2193..2468 -
1681464028.8512876-UTR-Ecto-sp13_S_contig76:4555..45721681464028.8512876-UTR-Ecto-sp13_S_contig76:4555..4572Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig76 4556..4572 -
1681464028.8618364-UTR-Ecto-sp13_S_contig76:5195..53661681464028.8618364-UTR-Ecto-sp13_S_contig76:5195..5366Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig76 5196..5366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.800822-CDS-Ecto-sp13_S_contig76:2468..25741681464028.800822-CDS-Ecto-sp13_S_contig76:2468..2574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76 2469..2574 -
1681464028.8190353-CDS-Ecto-sp13_S_contig76:2784..29081681464028.8190353-CDS-Ecto-sp13_S_contig76:2784..2908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76 2785..2908 -
1681464028.831228-CDS-Ecto-sp13_S_contig76:3619..37331681464028.831228-CDS-Ecto-sp13_S_contig76:3619..3733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76 3620..3733 -
1681464028.8416858-CDS-Ecto-sp13_S_contig76:4461..45551681464028.8416858-CDS-Ecto-sp13_S_contig76:4461..4555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76 4462..4555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76.18804.1

>prot_Ecto-sp13_S_contig76.18804.1 ID=prot_Ecto-sp13_S_contig76.18804.1|Name=mRNA_Ecto-sp13_S_contig76.18804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MSDNRDTDEEQAPPEPETGEGKFVFPNGAVYEGQYIVIDGVKKRNGFGTH
TNGKDKYIGEWQLDSMHGQGEMIFSSDASYRGSFAGNKFHGEGRYEWNDG
ATYEGGWRENKMHGKGCYSDSEKSRWEGDFFNGMYDNGRAKVALR*
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mRNA from alignment at Ecto-sp13_S_contig76:2193..5366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76.18804.1 ID=mRNA_Ecto-sp13_S_contig76.18804.1|Name=mRNA_Ecto-sp13_S_contig76.18804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76:2193..5366- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAAAATCCGTTTGCCTCGAACGCAGACCATTGTTCTGCGTGTAGTTCT
TAGAAACAGCACGTGTCAAAACCCGTGGGTCCGGGATCGAGTGGAAAACG
GAACTGTACACAAAGAAGGAGTCAAAACACTTCATTGATCGGCTAACGCG
CTGTGCAGGTCGAGCGCAGAGGTGAGCATGATCCGGGAACCTCTCCACAG
TTATTAGTCACAAATGACGCTGTCTCCCACAGCGAACAAACATCAGCATT
GTTGTCCCGCAAGCTCAAGGGAGACCCAGGCTTCTGGCATGATTCCCTTG
AGAAGTGCCTGTGCGTTGACAAGGGCGCGATAGCTTTCTTACCTCAGCTA
GCTGCCATCCGTGGCATTGCACAATCATTCATGATTGATCCCGGATCGGC
GGGGTACGCAGCCCGATTACTGTACAGTCTGTCTTGTCGATATCAATACC
GACCTCCAGCAAAGCTCCTATCTGTCAAGCCCGTCTGAAGCTTCATGTGG
TGCTTTAGTAGTGTCGTGTGTTGTCGAGCCCACAATACTGCTGGCCGACC
GGTCGATCGCCGTGTTGCGTTATTACAGTAGTTGCCGAAATCACACAAAC
AACTTCTGTAGTCCACACCGAGAGCTACAGCATCAGCTCTGTACAGCACA
CTTCCGACCCTACTCCGCAACTTCCTTTTCCTTGCAGCACGCCCTGGCAG
AACTCTGAGCACCAACATTGTACTCATCATGTTCACCAAACTGAAGACCG
CATCCCCTACAGCCACCTAAACTCTTGATTCCCTTGATGTTCAGCAAAAT
CTCATCTGAGCATGAGCGACAACAGAGACACCGACGAAGAACAGGCGCCT
CCAGAGCCAGAGACAGGAGAAGGGAAGTTCGTGTTTCCGAACGGCGCGGT
GTATGGTAAGAAGTGGACACCGGCACGACTCACTCGTGGCATAACTGACT
GACGGCATCACATTTATTCCGCTTGATCGCCGATGAAACATGACGTTGAC
GGCTCCCTCAGAGTACACGAAAAAGATATAAAAAAAACCCATGCGCTAGA
AAATCCGCATTCGATCAAGACGCAACCAACCGTAGCTTCTAGAATGCAAG
CCTGTTTACAACGTCTACCTAACTAGACATATTCCGCAGCCCTTGCAAGC
CTTTCATTTACTGTCACTTAAGGTTGCCTTCGGTAGCGTCTGCTTGGTAC
AAATAGGCCGACGTATGTATGTGTAGTCTACTGTACATGTCTACTGTGTG
TAGTCTACTGTACATTTCTACTGTATACATGTAATGGGAGGGACACCTCC
GTATGTCAGCGGTGCTCGCCGCGCCACTTTCTTTGCCTCGTTGCGACTGT
CAGGTGCTTCCTCAGCAATGCCGATTTTGGTCTCTACGAAGTACCTCTAC
CCCTTACAAACATGAACCAGCCAGGGAGAGCTCACACTCATGAATACGAG
CTACAATGTACCCGCAACCTTTATACAAGAACGTATGTACGTACTATGTA
TGTAGATTACAGTGGGCTTGATATTAAACTGTTCCTACTCGTTCGGGGCA
ACCATGTTGAGGAAGCGTGACAAGCGGGGCATGCATGAGATATGCTACCG
TTTAAGTAATTATTATCGTTATCTTGCTCACAGAGGGACAATACATCGTG
ATCGACGGCGTCAAGAAGCGTAATGGATTTGGCACGCACACAAATGGAAA
GGACAAATACATCGGAGAGTGGCAGCTCGACTCAATGCACGGTCAAGGTA
ACAACACACACTAGTCTATGGCCAACAATGATGGTGGTAATTGTGTAGGC
TATTGTAGCGTACAAGAAAGCAAGGGTCTGTTGTTGTCCAGAGAAAGAAG
GGCTAAGACATGTCACATGCCTAAAGAGCTGCAGTCATGGTTCCCTTTCT
TCTTGTACGGGCTGGCATCCAACCGATGATCTAGAGAATCAGTATTACGC
TCTAGTCTCGCATAGTTTTCTGCGGGCCGCTGACCCCGGGTTACGGTAGA
CACTCCAGCGTATCGTCACAGGGCTGGGTACTTCTCCACCGAACAAAATT
GCCGAAAACCCGCACTACACTACTGTACATGCTGTTTCAAGGGAAACGGT
CTGTTACGTAATCTTTCCCCCCAAGGCAAAAGGAAAGTTCCGGCGCGACC
TTCCACCCGTGGTACCCCACCTGGTGCGTGAATCCGAGGAGATGTAGACT
ATGTAGAAAATATGTAATGACAACGGACACCTTCTCCCCACCCATCCCCA
TCCATCACAGGAAACACCTTCAGGCTCTGTGTGGTTGAATCAATTCCAAA
TGAACCAGGAGCGAATCTGCAGTTTACGACACCACACAGAGCTGAACAGT
TGATATAGTGGGAACCATCCTGAAAAATTCGTACGATACCTTCATATTCT
TGATGAGACACTTCATTTGCTACCTAAACAAACGGAACTGCCCCATGGTG
TCGTTCAGGCGAGATGATTTTTTCCTCAGACGCCAGCTACCGGGGCTCTT
TCGCGGGCAACAAGTTCCACGGTGAAGGGCGGTACGAGTGGAACGATGGC
GCCACCTACGAGGGTGGCTGGAGAGAGAACAAGTAAGGCCGCGCTCCACC
GCTACAGAAAACTTCATGTTTGGCCGCACGTTAGTCTATGTTGATAATGC
CGTCGATTGCGAAACTATTGAATGAAGACACTGCATTTGACCTCCCTTCT
AAAGTATTCGTATGTGTTAACAAAAGCACCGTCGATTGGCGAAAGCGTTG
AATGACACCCCCATTCGTTGCCCAACTACGTCGAGTGAGCAGGATGCATG
GGAAAGGGTGTTACTCGGACAGCGAAAAGAGCCGTTGGGAGGGAGACTTC
TTCAACGGGATGTACGACAATGGTCGCGCGAAGGTGGCTCTTCGCTGAGC
GACAGCGGGCTCTTTGCACGTCGTATACATGGCCCGTTTTCATGTTGTGG
CTATAGTTACGGCGCTAGTGGATGGCGGCTTTTGACGCCGTCTGCTATTG
GTAGTTCGTGCGTGATTGCAGAATGATGAAGTAGCACCGGTGAAGAACAT
TTATTTTTTCGTGGTGTATCTCGTAGTACATCAAGTTTACAACACACATG
GCTTGGAAACCACGTCAAAGTGCCACCATAACCAAGGCCGGACCTCGTGG
ACCAACCACGTTTTTCCTACGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76:2193..5366-

>mRNA_Ecto-sp13_S_contig76.18804.1 ID=mRNA_Ecto-sp13_S_contig76.18804.1|Name=mRNA_Ecto-sp13_S_contig76.18804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76:2193..5366- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGACAACAGAGACACCGACGAAGAACAGGCGCCTCCAGAGCCAGA
GACAGGAGAAGGGAAGTTCGTGTTTCCGAACGGCGCGGTGTATGAGGGAC
AATACATCGTGATCGACGGCGTCAAGAAGCGTAATGGATTTGGCACGCAC
ACAAATGGAAAGGACAAATACATCGGAGAGTGGCAGCTCGACTCAATGCA
CGGTCAAGGCGAGATGATTTTTTCCTCAGACGCCAGCTACCGGGGCTCTT
TCGCGGGCAACAAGTTCCACGGTGAAGGGCGGTACGAGTGGAACGATGGC
GCCACCTACGAGGGTGGCTGGAGAGAGAACAAGATGCATGGGAAAGGGTG
TTACTCGGACAGCGAAAAGAGCCGTTGGGAGGGAGACTTCTTCAACGGGA
TGTACGACAATGGTCGCGCGAAGGTGGCTCTTCGCTGA
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