mRNA_Ecto-sp13_S_contig76.18803.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76.18803.1
Unique NamemRNA_Ecto-sp13_S_contig76.18803.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: D7FSY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY0_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 8.750e-70
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:   16 GTQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            G QSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK
Sbjct:  263 GAQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 366
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: A0A835ZCU3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU3_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.820e-38
Identity = 67/103 (65.05%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:   19 TQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            +Q+ V+S+NSIAFH YGTFATAGSDG F+FWDKDSRQRLK +  KQ  TIS   FSPDG L+ YA+SYDWSQGV  A P   + I +H V DDEIKPR K +K
Sbjct:  266 SQTGVFSINSIAFHPYGTFATAGSDGTFNFWDKDSRQRLKQFP-KQATTISTAAFSPDGSLYAYAVSYDWSQGVGGAQPGLPHEIKLHVVTDDEIKPRDKPRK 367
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: A0A074YVJ3_AURSE (Uncharacterized protein n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074YVJ3_AURSE)

HSP 1 Score: 130 bits (327), Expect = 2.070e-34
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:   22 QSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG +  NPQ  N + +H++A DE KPRP  KK
Sbjct:  255 QSNVYSVNSISFHPIHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGSVFAYAVSYDWHQGYQQNNPQYPNKVMLHSIAPDECKPRPNAKK 356
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: A0A7S2FCQ4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FCQ4_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.250e-34
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:   25 SSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            S VY+VN+IAFH  GTFATAGSDG F+FWDKDS+QRLK +    G+ IS  KFSP G LF Y++SYDWS+G E+  PQA N+IF+H V   E++PRP  K+
Sbjct:  241 SEVYAVNAIAFHPLGTFATAGSDGVFNFWDKDSKQRLKNFPRCNGS-ISAAKFSPSGNLFAYSVSYDWSKGREYYQPQAANDIFLHPVEASEVQPRPVKKQ 340
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: A0A4S8VY86_AURPU (WD40 repeat-like protein n=1 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S8VY86_AURPU)

HSP 1 Score: 127 bits (320), Expect = 2.670e-33
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   22 QSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG    NPQ  N + +H V  DE KPRP  KK
Sbjct:  265 QSNVYSVNSISFHPVHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGNIFAYAVSYDWHQGYSGNNPQYPNKVMLHPVIGDECKPRPNSKK 366
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: A0A4V4KBG8_AURPU (WD40 repeat-like protein n=22 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4V4KBG8_AURPU)

HSP 1 Score: 127 bits (320), Expect = 1.240e-32
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   22 QSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG    NPQ  N + +H V  DE KPRP  KK
Sbjct:  370 QSNVYSVNSISFHPVHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGNIFAYAVSYDWHQGYSGNNPQYPNKVMLHPVIGDECKPRPNSKK 471
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: A0A4S9BKU6_AURPU (WD40 repeat-like protein n=9 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S9BKU6_AURPU)

HSP 1 Score: 127 bits (320), Expect = 1.520e-32
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   22 QSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG    NPQ  N + +H V  DE KPRP  KK
Sbjct:  389 QSNVYSVNSISFHPVHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGNIFAYAVSYDWHQGYSGNNPQYPNKVMLHPVIGDECKPRPNSKK 490
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: RAE1_SCHPO (Poly(A)+ RNA export protein n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=RAE1_SCHPO)

HSP 1 Score: 125 bits (313), Expect = 2.190e-32
Identity = 62/102 (60.78%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   16 GTQSSVYSVNSIAFH-KYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPK 318
            G  + VYSVNSIAFH +YGTF+TAGSDG F FWDKDS QRLK+Y    G TIS   F+  G +F YA+SYDWS+G    N Q  N I +H V  DEIKPRPK
Sbjct:  249 GNSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYP-NVGGTISCSTFNRTGDIFAYAISYDWSKGYTFNNAQLPNKIMLHPVPQDEIKPRPK 349
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: A0A150VEV5_9PEZI (Uncharacterized protein n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150VEV5_9PEZI)

HSP 1 Score: 125 bits (313), Expect = 2.660e-32
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   19 TQSSVYSVNSIAFH-KYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            T S+VY+VN+I+FH ++GTF+TAGSDG FHFWDKD++ RLK Y  + G TIS   F+  G +F YA+SYDWS+G +  NPQ  N I +H +  DE KPRPK  K
Sbjct:  260 TVSNVYAVNAISFHPQHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGTISATSFNRTGNIFAYAVSYDWSKGYQSNNPQYPNKIMLHPITGDECKPRPKTTK 362
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BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Match: A0A4V4KCD9_AURPU (Pheromone-processing carboxypeptidase KEX1 n=4 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4V4KCD9_AURPU)

HSP 1 Score: 127 bits (320), Expect = 5.690e-32
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   22 QSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 327
            QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG    NPQ  N + +H V  DE KPRP  KK
Sbjct: 1052 QSNVYSVNSISFHPVHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGNIFAYAVSYDWHQGYSGNNPQYPNKVMLHPVIGDECKPRPNSKK 1153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76.18803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY0_ECTSI8.750e-7099.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCU3_9STRA1.820e-3865.05WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A074YVJ3_AURSE2.070e-3459.22Uncharacterized protein n=1 Tax=Aureobasidium subg... [more]
A0A7S2FCQ4_9STRA3.250e-3460.40Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4S8VY86_AURPU2.670e-3359.22WD40 repeat-like protein n=1 Tax=Aureobasidium pul... [more]
A0A4V4KBG8_AURPU1.240e-3259.22WD40 repeat-like protein n=22 Tax=Aureobasidium pu... [more]
A0A4S9BKU6_AURPU1.520e-3259.22WD40 repeat-like protein n=9 Tax=Aureobasidium pul... [more]
RAE1_SCHPO2.190e-3260.78Poly(A)+ RNA export protein n=1 Tax=Schizosaccharo... [more]
A0A150VEV5_9PEZI2.660e-3255.77Uncharacterized protein n=1 Tax=Acidomyces richmon... [more]
A0A4V4KCD9_AURPU5.690e-3259.22Pheromone-processing carboxypeptidase KEX1 n=4 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76contigEcto-sp13_S_contig76:241..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score224.6
Seed ortholog evalue2.3e-56
Seed eggNOG ortholog2880.D7FSY0
Preferred nameRAE1
Model size330
KEGG koko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000054,GO:0000151,GO:0000278,GO:0000280,GO:0000922,GO:0000972,GO:0000973,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008582,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010564,GO:0010604,GO:0010628,GO:0010793,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016006,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016973,GO:0017038,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022613,GO:0031081,GO:0031224,GO:0031323,GO:0031329,GO:0031461,GO:0031503,GO:0031514,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032182,GO:0032239,GO:0032386,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0034629,GO:0036126,GO:0040008,GO:0042221,GO:0042254,GO:0042886,GO:0042995,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045886,GO:0045926,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048638,GO:0048640,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051276,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0060236,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070507,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071407,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072686,GO:0080008,GO:0080134,GO:0080135,GO:0090087,GO:0090224,GO:0097159,GO:0097223,GO:0097431,GO:0097729,GO:0120025,GO:0140013,GO:1900034,GO:1901363,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903046,GO:1903827,GO:1904396,GO:1904397,GO:1905809,GO:1990234,GO:2000026,GO:2000045,GO:2000197,GO:2000728
Exons2
EggNOG free text desc.transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
EggNOG OGsKOG0647@1,KOG0647@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_006770.1
Cds size330
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.7374847-CDS-Ecto-sp13_S_contig76:240..4461681464028.7374847-CDS-Ecto-sp13_S_contig76:240..446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76 241..446 +
1681464028.7539167-CDS-Ecto-sp13_S_contig76:901..10251681464028.7539167-CDS-Ecto-sp13_S_contig76:901..1025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76 902..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76.18803.1prot_Ecto-sp13_S_contig76.18803.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76 241..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76.18803.1

>prot_Ecto-sp13_S_contig76.18803.1 ID=prot_Ecto-sp13_S_contig76.18803.1|Name=mRNA_Ecto-sp13_S_contig76.18803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MLLRQGTQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDL
KQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDE
IKPRPKDKK*
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mRNA from alignment at Ecto-sp13_S_contig76:241..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76.18803.1 ID=mRNA_Ecto-sp13_S_contig76.18803.1|Name=mRNA_Ecto-sp13_S_contig76.18803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=785bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76:241..1025+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGCGACAGGGCACACAGTCGTCGGTGTACTCCGTCAACTCGAT
CGCCTTCCACAAGTACGGCACCTTCGCCACCGCCGGCTCCGATGGGAACT
TCCACTTCTGGGACAAGGACTCGAGGCAGCGCCTCAAGGCTTACGACCTC
AAGCAGGGTAACACCATCTCGGTGTGCAAGTTCAGTCCTGACGGCGGTCT
TTTTGGGTAAGGAAGAAGAAAGAAGGCGTTTTCCTTTTTTTCTTGAGGCG
TAGGTTGACTCCGCCAATGGCGTCGTGATTCCACACCGTCAGTGGCTACT
TTCAATTCCATGATATACCTTACACAAAAAGTGGACGAACCGTCAGTCTA
GTCTTCAAATTAGCCTGGGTCGATATCCCCGCTGCTGCTGCTGCTGCTGC
CGCCGCCGTCTTGTTCGTGGATGAAACCGCTGCTTTATGTACTTTGGTAG
ATGTCGCACGCAGGCAGCGCTGGACCACAGCACAAGCGAGAATTATTTGC
TAAATGTGTTTGTTCTGGGTCGCTGGTGCAAGTTTTGCGCATGGTGCGGT
ATGCGTTCCGGTGTATAGCCCCAAGCACCTCGCCTCGCCAACCCGACCCC
TTCCTTTTGGTCGATCAACCAACCCTCTTGTTCTCTGTCGTCCGGAACTT
TCTCGGAAAAGGTACGCGATGAGCTACGACTGGTCCCAGGGTGTGGAGCA
CGCCAACCCCCAGGCGACGAACAACATCTTCGTGCACGCGGTCGCGGACG
ACGAGATTAAGCCCAGACCAAAGGACAAGAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76:241..1025+

>mRNA_Ecto-sp13_S_contig76.18803.1 ID=mRNA_Ecto-sp13_S_contig76.18803.1|Name=mRNA_Ecto-sp13_S_contig76.18803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76:241..1025+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGCGACAGGGCACACAGTCGTCGGTGTACTCCGTCAACTCGAT
CGCCTTCCACAAGTACGGCACCTTCGCCACCGCCGGCTCCGATGGGAACT
TCCACTTCTGGGACAAGGACTCGAGGCAGCGCCTCAAGGCTTACGACCTC
AAGCAGGGTAACACCATCTCGGTGTGCAAGTTCAGTCCTGACGGCGGTCT
TTTTGGGTACGCGATGAGCTACGACTGGTCCCAGGGTGTGGAGCACGCCA
ACCCCCAGGCGACGAACAACATCTTCGTGCACGCGGTCGCGGACGACGAG
ATTAAGCCCAGACCAAAGGACAAGAAGTAG
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