mRNA_Ecto-sp13_S_contig7596.18797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A6H5KGL7_9PHAE (SGL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGL7_9PHAE) HSP 1 Score: 231 bits (588), Expect = 8.130e-73 Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = 1
Query: 4 SKLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGYLYMAASERVLRVKVLTKAAPAPPSI 366
SKLYLAVSSPERPAWHVYDVG+DGEL NRRLFLDARPMKEAYGVGVPDG+KVDERGN+FAAAPGGVAVVSPGG HLGM+LTGGVFVANVALADDGYLYMAASERVLRVKVLTKAAPAP SI
Sbjct: 264 SKLYLAVSSPERPAWHVYDVGEDGELANRRLFLDARPMKEAYGVGVPDGVKVDERGNIFAAAPGGVAVVSPGGQHLGMILTGGVFVANVALADDGYLYMAASERVLRVKVLTKAAPAPLSI 384
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: W0RNE1_9BACT (SMP-30/Gluconolaconase/LRE-like region-containing protein n=2 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0RNE1_9BACT) HSP 1 Score: 103 bits (256), Expect = 9.550e-24 Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTK 342
LY+AVS PER W YDV DG L R+F DA + + G+PDGMKVD GN+FA PGG+ V+SP G HLG + G AN A DDG LY+ ++ ++LR+++ TK
Sbjct: 236 LYVAVSDPERAVWMAYDVAADGTLARGRVFFDATALAKQGKPGLPDGMKVDRAGNLFATGPGGILVLSPQGKHLGTIAMGQP-TANCAWGDDGSTLYITSNHQLLRLRLSTK 346
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A356FFN1_9BACT (Gluconolactonase (Fragment) n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FFN1_9BACT) HSP 1 Score: 100 bits (249), Expect = 1.610e-23 Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 7 KLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDG-YLYMAASERVLRVKVLTK 342
KLY+A S P++ W VYDV DDG + N ++F D+ + +G+PDG+KVD++GN+FA PGGV V +P G HLG + TG AN +DG LYM A R+K+ TK
Sbjct: 128 KLYVASSDPDKAIWMVYDVQDDGSIANGKVFFDSTAWFKEGRLGLPDGLKVDQQGNIFATGPGGVLVFAPDGTHLGTIETGQK-TANCGFGNDGSVLYMTADMFFCRIKLNTK 239
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A7Y5QVJ2_9BACT (SMP-30/gluconolactonase/LRE family protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7Y5QVJ2_9BACT) HSP 1 Score: 102 bits (253), Expect = 2.260e-23 Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTKAA 348
LY+A S P W YDV DG + N R+ DA P+ + G+PDGM+VD GN+FAA PGG+ V++P G HLG ++TG AN A DDG LYM A++++ R+++ T A
Sbjct: 226 LYVANSDPAHAVWMAYDVAADGTIGNGRVLFDATPLAKQGKPGLPDGMRVDRAGNLFAAGPGGILVLTPQGKHLGTIVTGQP-TANCAWGDDGSTLYMTANDQLFRIRLTTTGA 338
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A3M1R5Q6_9BACT (SMP-30/gluconolactonase/LRE family protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1R5Q6_9BACT) HSP 1 Score: 100 bits (248), Expect = 3.200e-23 Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 4 SKLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTK 342
S LY+A S PE P W + V +DG L R+F DA+P +A G+PDGMKVD GN++A PGGV +++P G LG + TG V AN A +DG LY+ A +LR++ TK
Sbjct: 143 SILYVAQSDPENPVWMAFPVKEDGTLGEGRVFFDAKPWVDAGLKGLPDGMKVDRHGNLWATGPGGVNIIAPDGSFLGRLKTG-VATANCAFGEDGSALYITADRYLLRIRTTTK 255
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A1V0DEH9_9BACT (Gluconolactonase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DEH9_9BACT) HSP 1 Score: 100 bits (250), Expect = 8.480e-23 Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLT 339
LY+A S P RP YDV DG + N R+F DA P+ G+PDG+K+D G +FA PGGV V++P G HLG +LTG AN A DDG LYM A+++++R++ T
Sbjct: 251 LYVAQSDPNRPVIMAYDVQPDGTIANGRVFFDAAPLAAQGRRGLPDGLKLDRDGTLFATGPGGVLVIAPDGSHLGTILTGEP-TANCAFGDDGRTLYMTANDKLMRIRTGT 360
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: UPI0019AA22B4 (SMP-30/gluconolactonase/LRE family protein n=1 Tax=Steroidobacteraceae bacterium TaxID=2689616 RepID=UPI0019AA22B4) HSP 1 Score: 99.4 bits (246), Expect = 1.780e-22 Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 1
Query: 10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTKAAPAP 357
LY+A S P W Y+V DG + N R+F D+ + + G GVPDG+KVD RGNVFA PGGV + +P G LG +LTG V ANV+ +DG L++ A+ RVLR++ T+ P P
Sbjct: 204 LYVANSQTRLPIWKAYEVRRDGTIANGRVFADSSKVYKE-GDGVPDGLKVDVRGNVFATGPGGVLIYAPDGTLLGRILTG-VPTANVSFGEDGATLFITANHRVLRLRTQTQGMPLP 318
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A3L7NQJ4_9BACT (SMP-30/gluconolactonase/LRE family protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NQJ4_9BACT) HSP 1 Score: 99.4 bits (246), Expect = 2.520e-22 Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 7 KLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTKAAPAP 357
+LY+A S PE P W V++V DG L + F D + + ++ G+PDG+KVD +GN+FA PGGV V++ G HLG +LTG AN DDG LYM A + R+ +L+ A P P
Sbjct: 229 RLYVAQSDPEAPIWKVFNVQADGTLDTGKTFFDGKKLFQSRKKGLPDGLKVDSKGNIFATGPGGVLVIAADGTHLGTILTGQA-TANCGFGDDGKTLYMTADSHLCRI-MLSTAGPLP 344
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A1G3ZYZ4_9BACT (Gluconolactonase n=1 Tax=Verrucomicrobia bacterium GWF2_62_7 TaxID=1802432 RepID=A0A1G3ZYZ4_9BACT) HSP 1 Score: 99.0 bits (245), Expect = 3.080e-22 Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTK 342
LY+A S P+R W YDV DG L R+F DA P+++ G+PDGMKVD RGNVFA PGGV + SP G HLG + TG N A DDG LY+ A + RVK TK
Sbjct: 223 LYVANSDPQRAIWMAYDVKPDGTLGTGRVFFDATPLRKGRK-GLPDGMKVDCRGNVFATGPGGVLIFSPDGKHLGTLNTGEA-TGNCAWGDDGSTLYITADMFLCRVKTTTK 332
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A2D5BPY9_9BACT (Gluconolactonase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5BPY9_9BACT) HSP 1 Score: 99.0 bits (245), Expect = 3.380e-22 Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 7 KLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDG-YLYMAASERVLRVKVLTK 342
KLY+A S P+R W +YDV DG + N +F DA + G+PDG+KVD GN+FA PGGV V +P G HLG + TG AN DDG LYM A + R+++ TK
Sbjct: 228 KLYVACSDPDRAIWMIYDVQADGSITNGEVFFDATTWFKEGRPGLPDGLKVDRAGNIFATGPGGVLVFTPDGAHLGTISTGQK-TANCGFGDDGTVLYMTADMFLCRIRLTTK 339 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7596.18797.1 >prot_Ecto-sp13_S_contig7596.18797.1 ID=prot_Ecto-sp13_S_contig7596.18797.1|Name=mRNA_Ecto-sp13_S_contig7596.18797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp ISKLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGback to top mRNA from alignment at Ecto-sp13_S_contig7596:26..1506+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7596.18797.1 ID=mRNA_Ecto-sp13_S_contig7596.18797.1|Name=mRNA_Ecto-sp13_S_contig7596.18797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7596:26..1506+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7596:26..1506+ >mRNA_Ecto-sp13_S_contig7596.18797.1 ID=mRNA_Ecto-sp13_S_contig7596.18797.1|Name=mRNA_Ecto-sp13_S_contig7596.18797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7596:26..1506+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |