mRNA_Ecto-sp13_S_contig7596.18797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7596.18797.1
Unique NamemRNA_Ecto-sp13_S_contig7596.18797.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A6H5KGL7_9PHAE (SGL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGL7_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 8.130e-73
Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = 1
Query:    4 SKLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGYLYMAASERVLRVKVLTKAAPAPPSI 366
            SKLYLAVSSPERPAWHVYDVG+DGEL NRRLFLDARPMKEAYGVGVPDG+KVDERGN+FAAAPGGVAVVSPGG HLGM+LTGGVFVANVALADDGYLYMAASERVLRVKVLTKAAPAP SI
Sbjct:  264 SKLYLAVSSPERPAWHVYDVGEDGELANRRLFLDARPMKEAYGVGVPDGVKVDERGNIFAAAPGGVAVVSPGGQHLGMILTGGVFVANVALADDGYLYMAASERVLRVKVLTKAAPAPLSI 384          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: W0RNE1_9BACT (SMP-30/Gluconolaconase/LRE-like region-containing protein n=2 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0RNE1_9BACT)

HSP 1 Score: 103 bits (256), Expect = 9.550e-24
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTK 342
            LY+AVS PER  W  YDV  DG L   R+F DA  + +    G+PDGMKVD  GN+FA  PGG+ V+SP G HLG +  G    AN A  DDG  LY+ ++ ++LR+++ TK
Sbjct:  236 LYVAVSDPERAVWMAYDVAADGTLARGRVFFDATALAKQGKPGLPDGMKVDRAGNLFATGPGGILVLSPQGKHLGTIAMGQP-TANCAWGDDGSTLYITSNHQLLRLRLSTK 346          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A356FFN1_9BACT (Gluconolactonase (Fragment) n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FFN1_9BACT)

HSP 1 Score: 100 bits (249), Expect = 1.610e-23
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    7 KLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDG-YLYMAASERVLRVKVLTK 342
            KLY+A S P++  W VYDV DDG + N ++F D+    +   +G+PDG+KVD++GN+FA  PGGV V +P G HLG + TG    AN    +DG  LYM A     R+K+ TK
Sbjct:  128 KLYVASSDPDKAIWMVYDVQDDGSIANGKVFFDSTAWFKEGRLGLPDGLKVDQQGNIFATGPGGVLVFAPDGTHLGTIETGQK-TANCGFGNDGSVLYMTADMFFCRIKLNTK 239          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A7Y5QVJ2_9BACT (SMP-30/gluconolactonase/LRE family protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7Y5QVJ2_9BACT)

HSP 1 Score: 102 bits (253), Expect = 2.260e-23
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTKAA 348
            LY+A S P    W  YDV  DG + N R+  DA P+ +    G+PDGM+VD  GN+FAA PGG+ V++P G HLG ++TG    AN A  DDG  LYM A++++ R+++ T  A
Sbjct:  226 LYVANSDPAHAVWMAYDVAADGTIGNGRVLFDATPLAKQGKPGLPDGMRVDRAGNLFAAGPGGILVLTPQGKHLGTIVTGQP-TANCAWGDDGSTLYMTANDQLFRIRLTTTGA 338          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A3M1R5Q6_9BACT (SMP-30/gluconolactonase/LRE family protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1R5Q6_9BACT)

HSP 1 Score: 100 bits (248), Expect = 3.200e-23
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    4 SKLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTK 342
            S LY+A S PE P W  + V +DG L   R+F DA+P  +A   G+PDGMKVD  GN++A  PGGV +++P G  LG + TG V  AN A  +DG  LY+ A   +LR++  TK
Sbjct:  143 SILYVAQSDPENPVWMAFPVKEDGTLGEGRVFFDAKPWVDAGLKGLPDGMKVDRHGNLWATGPGGVNIIAPDGSFLGRLKTG-VATANCAFGEDGSALYITADRYLLRIRTTTK 255          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A1V0DEH9_9BACT (Gluconolactonase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DEH9_9BACT)

HSP 1 Score: 100 bits (250), Expect = 8.480e-23
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLT 339
            LY+A S P RP    YDV  DG + N R+F DA P+      G+PDG+K+D  G +FA  PGGV V++P G HLG +LTG    AN A  DDG  LYM A+++++R++  T
Sbjct:  251 LYVAQSDPNRPVIMAYDVQPDGTIANGRVFFDAAPLAAQGRRGLPDGLKLDRDGTLFATGPGGVLVIAPDGSHLGTILTGEP-TANCAFGDDGRTLYMTANDKLMRIRTGT 360          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: UPI0019AA22B4 (SMP-30/gluconolactonase/LRE family protein n=1 Tax=Steroidobacteraceae bacterium TaxID=2689616 RepID=UPI0019AA22B4)

HSP 1 Score: 99.4 bits (246), Expect = 1.780e-22
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTKAAPAP 357
            LY+A S    P W  Y+V  DG + N R+F D+  + +  G GVPDG+KVD RGNVFA  PGGV + +P G  LG +LTG V  ANV+  +DG  L++ A+ RVLR++  T+  P P
Sbjct:  204 LYVANSQTRLPIWKAYEVRRDGTIANGRVFADSSKVYKE-GDGVPDGLKVDVRGNVFATGPGGVLIYAPDGTLLGRILTG-VPTANVSFGEDGATLFITANHRVLRLRTQTQGMPLP 318          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A3L7NQJ4_9BACT (SMP-30/gluconolactonase/LRE family protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NQJ4_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 2.520e-22
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    7 KLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTKAAPAP 357
            +LY+A S PE P W V++V  DG L   + F D + + ++   G+PDG+KVD +GN+FA  PGGV V++  G HLG +LTG    AN    DDG  LYM A   + R+ +L+ A P P
Sbjct:  229 RLYVAQSDPEAPIWKVFNVQADGTLDTGKTFFDGKKLFQSRKKGLPDGLKVDSKGNIFATGPGGVLVIAADGTHLGTILTGQA-TANCGFGDDGKTLYMTADSHLCRI-MLSTAGPLP 344          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A1G3ZYZ4_9BACT (Gluconolactonase n=1 Tax=Verrucomicrobia bacterium GWF2_62_7 TaxID=1802432 RepID=A0A1G3ZYZ4_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 3.080e-22
Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   10 LYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGY-LYMAASERVLRVKVLTK 342
            LY+A S P+R  W  YDV  DG L   R+F DA P+++    G+PDGMKVD RGNVFA  PGGV + SP G HLG + TG     N A  DDG  LY+ A   + RVK  TK
Sbjct:  223 LYVANSDPQRAIWMAYDVKPDGTLGTGRVFFDATPLRKGRK-GLPDGMKVDCRGNVFATGPGGVLIFSPDGKHLGTLNTGEA-TGNCAWGDDGSTLYITADMFLCRVKTTTK 332          
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Match: A0A2D5BPY9_9BACT (Gluconolactonase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5BPY9_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 3.380e-22
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    7 KLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDGMKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDG-YLYMAASERVLRVKVLTK 342
            KLY+A S P+R  W +YDV  DG + N  +F DA    +    G+PDG+KVD  GN+FA  PGGV V +P G HLG + TG    AN    DDG  LYM A   + R+++ TK
Sbjct:  228 KLYVACSDPDRAIWMIYDVQADGSITNGEVFFDATTWFKEGRPGLPDGLKVDRAGNIFATGPGGVLVFTPDGAHLGTISTGQK-TANCGFGDDGTVLYMTADMFLCRIRLTTK 339          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7596.18797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGL7_9PHAE8.130e-7394.21SGL domain-containing protein n=2 Tax=Ectocarpus T... [more]
W0RNE1_9BACT9.550e-2448.21SMP-30/Gluconolaconase/LRE-like region-containing ... [more]
A0A356FFN1_9BACT1.610e-2346.02Gluconolactonase (Fragment) n=2 Tax=Planctomycetes... [more]
A0A7Y5QVJ2_9BACT2.260e-2345.61SMP-30/gluconolactonase/LRE family protein n=1 Tax... [more]
A0A3M1R5Q6_9BACT3.200e-2346.49SMP-30/gluconolactonase/LRE family protein (Fragme... [more]
A0A1V0DEH9_9BACT8.480e-2346.85Gluconolactonase n=2 Tax=Bacteroidetes TaxID=976 R... [more]
UPI0019AA22B41.780e-2247.01SMP-30/gluconolactonase/LRE family protein n=1 Tax... [more]
A0A3L7NQJ4_9BACT2.520e-2244.07SMP-30/gluconolactonase/LRE family protein n=2 Tax... [more]
A0A1G3ZYZ4_9BACT3.080e-2250.89Gluconolactonase n=1 Tax=Verrucomicrobia bacterium... [more]
A0A2D5BPY9_9BACT3.380e-2246.02Gluconolactonase n=1 Tax=Planctomycetes bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7596contigEcto-sp13_S_contig7596:26..1506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score230.3
Seed ortholog evalue5e-58
Seed eggNOG ortholog2880.D8LLF0
Model size390
KEGG rclassRC00537,RC00983
KEGG koko:K01053
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220
KEGG ModuleM00129
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.SMP-30/Gluconolaconase/LRE-like region
EggNOG OGs2S8F6@2759,COG3386@1
EC3.1.1.17
Cds size390
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.5607185-CDS-Ecto-sp13_S_contig7596:25..1481681464028.5607185-CDS-Ecto-sp13_S_contig7596:25..148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7596 26..148 +
1681464028.5741308-CDS-Ecto-sp13_S_contig7596:1239..15061681464028.5741308-CDS-Ecto-sp13_S_contig7596:1239..1506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7596 1240..1506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7596.18797.1prot_Ecto-sp13_S_contig7596.18797.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7596 26..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7596.18797.1

>prot_Ecto-sp13_S_contig7596.18797.1 ID=prot_Ecto-sp13_S_contig7596.18797.1|Name=mRNA_Ecto-sp13_S_contig7596.18797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
ISKLYLAVSSPERPAWHVYDVGDDGELVNRRLFLDARPMKEAYGVGVPDG
MKVDERGNVFAAAPGGVAVVSPGGHHLGMVLTGGVFVANVALADDGYLYM
AASERVLRVKVLTKAAPAPPSIVGETTVD*
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mRNA from alignment at Ecto-sp13_S_contig7596:26..1506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7596.18797.1 ID=mRNA_Ecto-sp13_S_contig7596.18797.1|Name=mRNA_Ecto-sp13_S_contig7596.18797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7596:26..1506+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCAAAGCTGTACCTGGCTGTCTCTTCGCCCGAGCGCCCGGCGTGGCA CGTGTACGACGTCGGGGACGACGGAGAGCTGGTCAATCGGAGGTTGTTCC TGGATGCGCGGCCGATGAAGGAGGTGAGTTTGGGTGATAACCCCATGCGC TCGTTTTCGTCAAGGCGGATGTTTTTTTTTTGTTCGTAGGACACGGGCGT GGGTGCTTACGCGACACGCACGCGAAGGGTCCGTGTTTTCCTGTGGAGAG AGGGAGGGCCCTGGGTGTGCGGAGAGCTGCAACTGCTGTGCCTGTGTGCG TCGGCGAAATGTCACGCCCAAACGCCATGGGCATCGTACTCTCGGACGGC TGTACTTCTCCCCCTCTTGGCTGTTTCAGCCACGGCGAGAAAGCCGAGCT GCTAGATAGTGCCGTGCCTCAACGTTGATGCCCCGCTACCGGCCGGCCGT TTCCCTTTCCCGAGTGCTGGTTTTCTTCGAGGAGAGGGAGAGCTGCAGCG TGGGTAGATGCGACGACGGCACTCGTTGAGGTTTTTGCTGGTGTGCGGAT TACACATTCACCAGAGACGTAGTGGCACCGTTGGGCGCAAAGAAGATGGA CTTGGACCAGTCGTTGCTGGTATTTTCGCCTATTCAGTGTCTACTACAAG TACTACATAAGTATTTTACGTTGGGGTGTGGTTAGTCTGCATGGCCTACC TGTTAAGATTTAGTTTCGCGTTGGCACTAGAAAAAACCTCCTCTCTTCCC CCCGCCTAGCCAAGCAAATCGCTTCCAGCGAACATGTGATACGTGTCTGG CGGGGTAGAACCCTATAACCGCGCCGCGTTATGTCGGCATTTCTACCCCC TTCTCACCTTGGTTTGGTCGCGTTTTGCCCACAGCCGTCGTGATGCGTCT CCGATACGCTTGCTGCACGGTTGCAGAAACTTGGGTGATGAAAATGAAAG GTGGAGAATATAGGCGTATATCGCGCCGCCGGGTTTTTCTGTCAGAGGCG CCTGTCTCTCAATCGGGAATCGGGTGTAGAAAACAGCGCCCCGTCGCAAG GGGGACGAGGCATGGTCGATGGTCAGCAGGGTCAGGCAACGCGGTAGAGT TTCCCCCGGTGTAACAACTAGGGCACGCAAACATGCGTGCCCCCCCCCTC CTTCCTTGCCCTTCCCCCGCCCGTGCCCTCGTGCTGATTGACATCCCCAC GATTTGTACCCAAGGCTTACGGCGTGGGGGTACCGGACGGGATGAAGGTC GACGAAAGAGGGAATGTTTTCGCTGCAGCACCCGGGGGCGTTGCAGTAGT GTCCCCGGGGGGCCACCACCTGGGAATGGTCTTGACGGGAGGGGTGTTCG TGGCGAACGTCGCTCTGGCGGACGACGGGTACCTGTACATGGCGGCCTCG GAGAGAGTGTTGAGAGTCAAAGTTCTCACCAAAGCAGCACCCGCTCCGCC CTCGATTGTGGGCGAGACTACTGTAGACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7596:26..1506+

>mRNA_Ecto-sp13_S_contig7596.18797.1 ID=mRNA_Ecto-sp13_S_contig7596.18797.1|Name=mRNA_Ecto-sp13_S_contig7596.18797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7596:26..1506+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCAAAGCTGTACCTGGCTGTCTCTTCGCCCGAGCGCCCGGCGTGGCA
CGTGTACGACGTCGGGGACGACGGAGAGCTGGTCAATCGGAGGTTGTTCC
TGGATGCGCGGCCGATGAAGGAGGCTTACGGCGTGGGGGTACCGGACGGG
ATGAAGGTCGACGAAAGAGGGAATGTTTTCGCTGCAGCACCCGGGGGCGT
TGCAGTAGTGTCCCCGGGGGGCCACCACCTGGGAATGGTCTTGACGGGAG
GGGTGTTCGTGGCGAACGTCGCTCTGGCGGACGACGGGTACCTGTACATG
GCGGCCTCGGAGAGAGTGTTGAGAGTCAAAGTTCTCACCAAAGCAGCACC
CGCTCCGCCCTCGATTGTGGGCGAGACTACTGTAGACTAG
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