mRNA_Ecto-sp13_S_contig7596.18799.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7596.18799.1
Unique NamemRNA_Ecto-sp13_S_contig7596.18799.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7596.18799.1 vs. uniprot
Match: A0A6H5KGV6_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.790e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -2 
Query:  258 RRTSGNTRPSSAISKSLPPSPKPSAADKRLRLSSDSDDKRP 380
            RRTSGNTRPSSAISKSLPPSPKPSAADKRLRLSSDSDDKRP
Sbjct:  318 RRTSGNTRPSSAISKSLPPSPKPSAADKRLRLSSDSDDKRP 358
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7596.18799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGV6_9PHAE5.790e-14100.00Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7596contigEcto-sp13_S_contig7596:4372..4754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size383
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.527918-CDS-Ecto-sp13_S_contig7596:4371..47521681464028.527918-CDS-Ecto-sp13_S_contig7596:4371..4752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7596 4372..4752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7596.18799.1prot_Ecto-sp13_S_contig7596.18799.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7596 4372..4752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7596.18799.1

>prot_Ecto-sp13_S_contig7596.18799.1 ID=prot_Ecto-sp13_S_contig7596.18799.1|Name=mRNA_Ecto-sp13_S_contig7596.18799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
PYSRKPSTRNSEYKHVHVHIARNASKEMTVFPKNRAHISESKHDARKIPQ
DLQKQLAATPAVSFIRDEQERLLALGEKTLAPFQLHGRLSSLSELSRSRL
SAAEGFGDGGSDLLIALEGLVFPLVLL
back to top

mRNA from alignment at Ecto-sp13_S_contig7596:4372..4754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7596.18799.1 ID=mRNA_Ecto-sp13_S_contig7596.18799.1|Name=mRNA_Ecto-sp13_S_contig7596.18799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=383bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7596:4372..4754+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTATTCCAGAAAACCGAGCACACGTAACAGCGAATACAAGCACGTACA
TGTACACATCGCACGAAACGCAAGCAAAGAAATGACGGTTTTTCCAAAAA
ACCGAGCACACATCAGCGAATCTAAGCATGACGCACGAAAAATCCCACAA
GACTTGCAGAAGCAACTCGCAGCAACACCCGCTGTTTCATTTATTCGCGA
TGAACAAGAACGGCTGCTCGCTTTGGGAGAGAAGACGCTCGCGCCATTCC
AGCTTCACGGACGCTTGTCATCGCTGTCCGAGCTGAGCCGAAGCCGCTTA
TCTGCCGCCGAAGGCTTCGGCGACGGCGGCAGCGACTTGCTGATAGCGCT
GGAGGGCCTGGTGTTCCCGCTGGTCCTCCTCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7596:4372..4754+

>mRNA_Ecto-sp13_S_contig7596.18799.1 ID=mRNA_Ecto-sp13_S_contig7596.18799.1|Name=mRNA_Ecto-sp13_S_contig7596.18799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7596:4372..4754+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTATTCCAGAAAACCGAGCACACGTAACAGCGAATACAAGCACGTACA
TGTACACATCGCACGAAACGCAAGCAAAGAAATGACGGTTTTTCCAAAAA
ACCGAGCACACATCAGCGAATCTAAGCATGACGCACGAAAAATCCCACAA
GACTTGCAGAAGCAACTCGCAGCAACACCCGCTGTTTCATTTATTCGCGA
TGAACAAGAACGGCTGCTCGCTTTGGGAGAGAAGACGCTCGCGCCATTCC
AGCTTCACGGACGCTTGTCATCGCTGTCCGAGCTGAGCCGAAGCCGCTTA
TCTGCCGCCGAAGGCTTCGGCGACGGCGGCAGCGACTTGCTGATAGCGCT
GGAGGGCCTGGTGTTCCCGCTGGTCCTCCTC
back to top