mRNA_Ecto-sp13_S_contig75937.18796.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75937.18796.1
Unique NamemRNA_Ecto-sp13_S_contig75937.18796.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: D8LC83_ECTSI (Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC83_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.660e-23
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   16 VDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            VDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY
Sbjct:  634 VDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 680
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: A0A6H5KCT2_9PHAE (Fn3_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.380e-22
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   16 VDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            VDAVLHAYLPGPAGGQA+AEVLFGSVNPSGRLPITYPRH+GNIP+PY
Sbjct:  419 VDAVLHAYLPGPAGGQAMAEVLFGSVNPSGRLPITYPRHAGNIPLPY 465
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: A0A0G4ILL3_PLABS (Fn3_like domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ILL3_PLABS)

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-15
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    7 SDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            +D    ++HAYLPGP GGQA+AEVL G VNPSGRLP+TYP HSG++  PY
Sbjct:  570 ADLAAGIVHAYLPGPKGGQAIAEVLLGKVNPSGRLPVTYPSHSGDLNTPY 619
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: A0A7C3DRL6_9BACT (Beta-glucosidase n=2 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7C3DRL6_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 6.530e-15
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 WSSDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            W ++ V A++ A+LPG  GG+AVAEVLFG VNPSGRLP+T PRHSG +P+ Y
Sbjct:  563 WIAESVPAIVEAWLPGEKGGRAVAEVLFGDVNPSGRLPVTVPRHSGQLPVTY 614
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: A0A396RQ60_9SPHN (Beta-glucosidase BglX n=2 Tax=Sphingomonas gilva TaxID=2305907 RepID=A0A396RQ60_9SPHN)

HSP 1 Score: 74.3 bits (181), Expect = 3.110e-14
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 WSSDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            W+++ VDA+LHA+ PG  GG AVA+VLFG  NPSG+LP+T+PR+ G +P+ Y
Sbjct:  510 WAAENVDAILHAWYPGTMGGHAVADVLFGDYNPSGKLPVTFPRNVGQVPIHY 561
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: A0A120GBW4_9SPHN (Glycosyl hydrolase n=2 Tax=Erythrobacter sp. AP23 TaxID=499656 RepID=A0A120GBW4_9SPHN)

HSP 1 Score: 73.9 bits (180), Expect = 4.250e-14
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 WSSDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            W+ + VDA+LHA+ PG  GG AVA+VLFG  NPSG+LP+T+PR+ G +P+ Y
Sbjct:  567 WADEHVDAILHAWYPGTQGGHAVADVLFGDYNPSGKLPVTFPRNVGQVPIHY 618
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: A0A7S0R8Q9_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R8Q9_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 5.800e-14
Identity = 30/51 (58.82%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    4 SSDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            ++D  +AV+HA+LPGP GG+A+A+VLFG VNPSGR+PI+YP+++G  P  Y
Sbjct:  440 AADAAEAVVHAFLPGPEGGEALADVLFGEVNPSGRMPISYPKYTGTAPSQY 490
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: A0A653ZUR4_9SPHN (Periplasmic beta-glucosidase n=1 Tax=Sphingomonas sp. AX6 TaxID=2653171 RepID=A0A653ZUR4_9SPHN)

HSP 1 Score: 73.6 bits (179), Expect = 5.810e-14
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 WSSDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            W+ D VDA+LHA+ PG  GG A+A+VL+G  NPSG+LP+T+PR+ G +P+ Y
Sbjct:  564 WAHDNVDAILHAWYPGTMGGHAIADVLYGDYNPSGKLPVTFPRNVGQVPIHY 615
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: UPI00191E10E2 (beta-glucosidase BglX n=1 Tax=unclassified Sphingopyxis TaxID=2614943 RepID=UPI00191E10E2)

HSP 1 Score: 73.6 bits (179), Expect = 5.810e-14
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 WSSDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            W+ + VDA+LHA+ PG  GG A+A+VLFG  NPSG+LP+T+PR+ G +P+ Y
Sbjct:  564 WAEENVDAILHAWYPGTQGGHAIADVLFGDYNPSGKLPVTFPRNVGQVPIHY 615
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BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Match: A0A1I4GX00_9PORP (Beta-glucosidase n=2 Tax=Bacteroidales TaxID=171549 RepID=A0A1I4GX00_9PORP)

HSP 1 Score: 73.6 bits (179), Expect = 5.810e-14
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 WSSDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPY 156
            W  + VDA+L A+ PG  GGQAVAE+L+G VNPSG+LPIT PRH G IP+ Y
Sbjct:  580 WLEENVDAILEAWEPGSFGGQAVAEILYGKVNPSGKLPITIPRHVGQIPIYY 631
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75937.18796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC83_ECTSI2.660e-23100.00Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus si... [more]
A0A6H5KCT2_9PHAE4.380e-2293.62Fn3_like domain-containing protein n=1 Tax=Ectocar... [more]
A0A0G4ILL3_PLABS3.500e-1566.00Fn3_like domain-containing protein n=1 Tax=Plasmod... [more]
A0A7C3DRL6_9BACT6.530e-1563.46Beta-glucosidase n=2 Tax=Bryobacterales bacterium ... [more]
A0A396RQ60_9SPHN3.110e-1457.69Beta-glucosidase BglX n=2 Tax=Sphingomonas gilva T... [more]
A0A120GBW4_9SPHN4.250e-1457.69Glycosyl hydrolase n=2 Tax=Erythrobacter sp. AP23 ... [more]
A0A7S0R8Q9_9CHLO5.800e-1458.82Hypothetical protein (Fragment) n=2 Tax=Pyramimona... [more]
A0A653ZUR4_9SPHN5.810e-1455.77Periplasmic beta-glucosidase n=1 Tax=Sphingomonas ... [more]
UPI00191E10E25.810e-1455.77beta-glucosidase BglX n=1 Tax=unclassified Sphingo... [more]
A0A1I4GX00_9PORP5.810e-1463.46Beta-glucosidase n=2 Tax=Bacteroidales TaxID=17154... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75937contigEcto-sp13_S_contig75937:36..191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score100.5
Seed ortholog evalue2.4e-19
Seed eggNOG ortholog2880.D8LC83
Model size156
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K05349
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000272,GO:0000323,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005886,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0008422,GO:0009056,GO:0009057,GO:0009251,GO:0015926,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:1901575
Exons1
EggNOG free text desc.xylan 1,4-beta-xylosidase activity
EggNOG OGs2QQ55@2759,COG1472@1
EC3.2.1.21
Cds size156
COG Functional cat.G
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464028.4400072-CDS-Ecto-sp13_S_contig75937:35..1911681464028.4400072-CDS-Ecto-sp13_S_contig75937:35..191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75937 36..191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75937.18796.1prot_Ecto-sp13_S_contig75937.18796.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75937 36..191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75937.18796.1

>prot_Ecto-sp13_S_contig75937.18796.1 ID=prot_Ecto-sp13_S_contig75937.18796.1|Name=mRNA_Ecto-sp13_S_contig75937.18796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
WSSDQVDAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPM
PY
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mRNA from alignment at Ecto-sp13_S_contig75937:36..191+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75937.18796.1 ID=mRNA_Ecto-sp13_S_contig75937.18796.1|Name=mRNA_Ecto-sp13_S_contig75937.18796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75937:36..191+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTCGTCCGATCAGGTGGATGCCGTGCTGCACGCGTACCTGCCTGGGCC
TGCCGGAGGGCAAGCGGTGGCGGAGGTGCTGTTCGGGTCCGTCAACCCTT
CGGGCAGGCTGCCGATCACGTACCCCCGACATTCTGGGAACATTCCTATG
CCGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75937:36..191+

>mRNA_Ecto-sp13_S_contig75937.18796.1 ID=mRNA_Ecto-sp13_S_contig75937.18796.1|Name=mRNA_Ecto-sp13_S_contig75937.18796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75937:36..191+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTCGTCCGATCAGGTGGATGCCGTGCTGCACGCGTACCTGCCTGGGCC
TGCCGGAGGGCAAGCGGTGGCGGAGGTGCTGTTCGGGTCCGTCAACCCTT
CGGGCAGGCTGCCGATCACGTACCCCCGACATTCTGGGAACATTCCTATG
CCGTAC
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