mRNA_Ecto-sp13_S_contig759.18790.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig759.18790.1
Unique NamemRNA_Ecto-sp13_S_contig759.18790.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: D7G6C1_ECTSI (RanBD1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6C1_ECTSI)

HSP 1 Score: 779 bits (2011), Expect = 1.520e-277
Identity = 464/499 (92.99%), Postives = 473/499 (94.79%), Query Frame = 1 
Query:    1 LLLCTMRKRGADGETDSQEVIANRRKARVSGRFRQSLEAKPATTAPSAFAGMAGITFNPGFDDGAGTSGRPATNTFSLGAAPTSAAAGNFKFGSGASGEPTGGGPTGVATAGFSFLNKPPAATPAAAFSKPPVMPKASSPPVPVAASPDTASSTLDSARWVGGAFGEGKTAVQGARLNKRFLSWVSNHLAEGELFLDSGMREYAACAAEIRDRANHAEAGAVSTTAFLHPRGSAAAIPPPRTVQKLSDDSMSKVAEASVSTATPLVTAPASAPSPVVKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGSTSGALTSVAPPATSPSGGFKFDSGGLGAVGSSAGAFNGFKVPSGVAIPPPVAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSVTKAKKMIKFAANVGDGLTSFMVKVTADEIDDLHTRVVGLVPRS 1497
            LLL TMRKR ADGETDSQEVIANRRKARVSGRFRQSLEAKPATTAPSAFAGMAGIT NPGFD GAG SGRPA NTFSLGAAPTSAAAGNFKFGSG   EP GGG TGVATAGFSFLNKPPA T AAA SKPPVMPKASSPPVP +ASPDTASSTLDSARWVGGAFGEGKTAVQGARLNKRFLSWVSNHLAEGELFLDSGMREYAACAAEIRDRANHAEAGAVSTTAFLHPRGSAAA+PPP+TVQK S+DS+S  AEASVSTATP VTAPASAP+P VKS XXXXXXXXXXXXXXXXXXXXXXXXXXX APGST GALTSVAPPATSP GGFKFD GGLGAVGSSAGAFNGFKVPSGVAIPPPVAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFR KLFRFKMEDKTWGDMGVGMLRLMKH+TNDSRRLVLRNDMGKVLLNAAVYKGMSVT+AKKMIKFAANVGDGLTSFMVKVTADE+DDLHTRVVGLVPRS
Sbjct:    9 LLLYTMRKRSADGETDSQEVIANRRKARVSGRFRQSLEAKPATTAPSAFAGMAGITPNPGFDYGAGASGRPAKNTFSLGAAPTSAAAGNFKFGSG---EPAGGGSTGVATAGFSFLNKPPATTLAAALSKPPVMPKASSPPVPGSASPDTASSTLDSARWVGGAFGEGKTAVQGARLNKRFLSWVSNHLAEGELFLDSGMREYAACAAEIRDRANHAEAGAVSTTAFLHPRGSAAAVPPPQTVQKPSEDSISMAAEASVSTATPSVTAPASAPAPDVKSTXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPGSTPGALTSVAPPATSPLGGFKFDGGGLGAVGSSAGAFNGFKVPSGVAIPPPVAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRAKLFRFKMEDKTWGDMGVGMLRLMKHTTNDSRRLVLRNDMGKVLLNAAVYKGMSVTRAKKMIKFAANVGDGLTSFMVKVTADEVDDLHTRVVGLVPRS 504
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: A0A3M6VHV7_9STRA (RanBD1 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHV7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.510e-12
Identity = 42/131 (32.06%), Postives = 80/131 (61.07%), Query Frame = 1 
Query: 1084 PVAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV----TKAKKM-IKFAANVGDGLTSFMVKVTADEIDD 1461
            P +  ++A D +E+ + +E+ + + +A   +++      + K+F FK ++K W D GV  L+++      S R+++RN++GKV+LN+A+YKGM++    TK KK  +  A  + + LT F++KV A  +D+
Sbjct:  328 PTSTSTTAKDQDEENIGREEATVIIKADSSDDDCTFEADKAKVFEFKKDEKRWADKGVHPLKVLVSKDTKSGRILVRNEIGKVVLNSALYKGMAIRPQETKGKKTGVTLALQMDNELTQFLIKVNATRVDE 458
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: H3GH49_PHYRM (RanBD1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH49_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 1.280e-11
Identity = 45/129 (34.88%), Postives = 79/129 (61.24%), Query Frame = 1 
Query: 1096 GSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV----TKAKKM-IKFAANVGDG-LTSFMVKVTADEIDDL 1464
            G+SA D +E+ + +E+ + + ++   +++      + K+F FK ++K W D GV  L+++ +    S R+++RN++GK++LN+A+YKGM V     K KK  +  A  V  G LT F++KV A  +DDL
Sbjct:  319 GASAQDEDEETIGREEATVIIKSDSPDDDCTFDADKAKIFEFKKDEKRWADKGVHPLKVLVNKQTKSARILVRNEIGKIVLNSALYKGMVVHPHEAKGKKTGVTLALQVEGGELTQFLLKVNAARVDDL 447
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: W2KID0_PHYPR (RanBD1 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2KID0_PHYPR)

HSP 1 Score: 77.8 bits (190), Expect = 2.510e-11
Identity = 54/184 (29.35%), Postives = 97/184 (52.72%), Query Frame = 1 
Query:  931 GSTSGALTSVAPPATSPSGGFKFDSGGLGAVGSSAGAFNGFKVPSGVAIPPPVAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV----TKAKKM-IKFAANVGDG-LTSFMVKVTADEIDDL 1464
            G + G LT+    A +P+GGF F                      G + P   +A ++AA  +E+ + +E+ + + +A   +++      + K+F FK ++K W D GV  L+++      S R+++RN++GK++LN+A+YKGM++     K KK  +  A  V  G +T F++KV A  +D+L
Sbjct:  313 GFSFGNLTAPKSAAPAPTGGFSF----------------------GASAPAATSASTAAAVEDEENIGREEATVIIKADSPDDDCTFEADKAKIFEFKKDEKRWADKGVHPLKVLVSQETKSARILVRNEIGKIVLNSALYKGMAIRPHEAKGKKTGVTLALQVEGGEMTQFLLKVNAARVDEL 474
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: A0A662X9V3_9STRA (RanBD1 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9V3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.360e-10
Identity = 63/192 (32.81%), Postives = 105/192 (54.69%), Query Frame = 1 
Query:  928 PGSTSGALTSVAPPATSPSGGFKFDSGGLGAVGSSA----GAFNGFKVPSGVAIPPP----VAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV----TKAKKM-IKFAANVGDG-LTSFMVKVTADEIDD 1461
            P  + G L   +  A SPSGGF F  G L A   S      AF+G K  S  A  P     V + ++A D +E+ + +E+ + + +A   ++E      + K+F FK ++K W D GV  L+++ +    S R+++RN++GK++LN+++YKG++V     K KK  +  A  V DG +  F++KV A  +D+
Sbjct:  400 PAFSFGGLPKPSAAAASPSGGFSF--GNLTAPKPSTMATPPAFSGLKPFSFGASAPAASTAVPSSAAAQDEDEETVGREEATVILKADAPDDECTFEAEKAKVFEFKNDEKRWADKGVHPLKVLVNKETKSARILVRNEIGKIVLNSSLYKGLTVRPHEVKGKKTGVTLALQVEDGSMAQFLLKVNAARVDE 589
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: K3WSW0_GLOUD (RanBD1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSW0_GLOUD)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-10
Identity = 32/97 (32.99%), Postives = 62/97 (63.92%), Query Frame = 1 
Query: 1186 VVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV----TKAKKM-IKFAANVGDGLTSFMVKVTADEIDD 1461
            V    + K+F FK ++K W D G+  L+++ +  +   R+++RN++GK++LN+++YKGMS+    TK KK  +  +  V   +T +++KV A ++D+
Sbjct:    9 VFDAEKAKVFEFKKDEKRWADKGLHPLKVLVNKDSKKARILVRNEIGKIVLNSSLYKGMSIKAHETKGKKTGVIVSLQVDGAMTQYLLKVNAAKVDE 105
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: M4BXI6_HYAAE (RanBD1 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXI6_HYAAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.680e-10
Identity = 62/190 (32.63%), Postives = 103/190 (54.21%), Query Frame = 1 
Query:  928 PGSTSGALTSVAPP---ATSPSGGFKFDSGGLGAVGSSAGAFNGFKVPSGVAIPPPVAAGSSAADAE-EDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV-----TKAKKMIKFAANVGDG--LTSFMVKVTADEIDDL 1464
            P  + GALT  A P   +T  +GGF F   G     +SA + +   +  G+++P    + S+  + E E+ + +E+ + + +A   +++      + K+F FK ++K W D GV  L+++    + S R++ RN +GKV+LN+A+YKGMSV     T  KK   + A  GD   LT F++KV    ID+L
Sbjct:  269 PAFSFGALTKPAVPVASSTPATGGFAF---GNMTAATSAVSASSDGLTFGLSVPAASTSTSATVEEENEENIGREEATVIIKADSPDDDCTFEADKAKIFEFKKDEKRWADKGVHPLKVLVSKESKSARILARNAIGKVVLNSALYKGMSVQPHTETTGKKTGVYLALQGDSSDLTRFLIKVNVTRIDEL 455
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: A0A2P4XK29_9STRA (RanBD1 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XK29_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.830e-10
Identity = 43/132 (32.58%), Postives = 78/132 (59.09%), Query Frame = 1 
Query: 1081 PPVAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV----TKAKKM-IKFAANVGDG-LTSFMVKVTADEID 1458
            P  +  ++A D +E+ + +E+ + + +A   +++      + K+F FK ++K W D GV  L+++      S R+++RN++GK++LN+A+YKGM+V     K KK  +  A  V  G LT F++KV A  +D
Sbjct:  346 PSTSTSAAAGDEDEENIGREEATVIIKADSPDDDCTFEADKAKIFEFKKDEKRWADKGVHPLKVLVSKETKSARILVRNEIGKIVLNSALYKGMAVRPHEVKGKKTGVTLALQVEGGELTQFLLKVNAARVD 477
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: A0A3F2RSN4_9STRA (RanBD1 domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSN4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.140e-10
Identity = 41/129 (31.78%), Postives = 77/129 (59.69%), Query Frame = 1 
Query: 1093 AGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV----TKAKKM-IKFAANVGDG-LTSFMVKVTADEIDD 1461
            A + A D +E+ + +E+ + + +A   +++      + K+F FK ++K W D GV  L+++      S R+++RN++GK++LN+A+Y+G++V     K KK  +  A  V  G LT F++KV A  +D+
Sbjct:  186 ASAPAQDGDEENIGREEATVIIKADSPDDDCTFDVEKAKIFEFKKDEKRWADKGVHPLKVLVSKETKSARILVRNEIGKIVLNSALYEGLAVHPQEAKGKKTGVTLALQVESGELTQFLIKVNAARVDE 314
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BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Match: A0A329S328_9STRA (RanBD1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S328_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.460e-10
Identity = 42/124 (33.87%), Postives = 75/124 (60.48%), Query Frame = 1 
Query: 1111 DAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLFRFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMSV----TKAKKM-IKFAANVGDG-LTSFMVKVTADEIDDL 1464
            D EE+ + +E+ + + +A   +++      + K+F FK ++K W D GV  L+++      S R+++RN++GK++LN+A+YKGMS+     K KK  +  A  V  G L+ F++KV A  +D+L
Sbjct:  361 DDEEENIGREEATVIIKADSPDDDCTFEAEKAKIFEFKKDEKRWADKGVHPLKVLVSKETKSARILVRNEIGKIVLNSALYKGMSIRPHEAKGKKTGVTLALQVEGGELSQFLLKVNAARVDEL 484
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig759.18790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6C1_ECTSI1.520e-27792.99RanBD1 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A3M6VHV7_9STRA8.510e-1232.06RanBD1 domain-containing protein n=2 Tax=Peronospo... [more]
H3GH49_PHYRM1.280e-1134.88RanBD1 domain-containing protein n=1 Tax=Phytophth... [more]
W2KID0_PHYPR2.510e-1129.35RanBD1 domain-containing protein n=8 Tax=Phytophth... [more]
A0A662X9V3_9STRA1.360e-1032.81RanBD1 domain-containing protein n=1 Tax=Nothophyt... [more]
K3WSW0_GLOUD1.380e-1032.99RanBD1 domain-containing protein n=1 Tax=Globispor... [more]
M4BXI6_HYAAE1.680e-1032.63RanBD1 domain-containing protein n=1 Tax=Hyalopero... [more]
A0A2P4XK29_9STRA1.830e-1032.58RanBD1 domain-containing protein n=1 Tax=Phytophth... [more]
A0A3F2RSN4_9STRA2.140e-1031.78RanBD1 domain-containing protein n=1 Tax=Phytophth... [more]
A0A329S328_9STRA2.460e-1033.87RanBD1 domain-containing protein n=2 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig759contigEcto-sp13_S_contig759:3316..7669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score786.2
Seed ortholog evalue9e-225
Seed eggNOG ortholog2880.D7G6C1
Model size2093
KEGG koko:K18722,ko:K20282
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000226,GO:0000278,GO:0000972,GO:0000973,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005739,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006508,GO:0006511,GO:0006606,GO:0006607,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0030163,GO:0030466,GO:0031224,GO:0031267,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031967,GO:0031975,GO:0031990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034605,GO:0034613,GO:0035392,GO:0036228,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0044615,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0045814,GO:0045892,GO:0045934,GO:0046907,GO:0048519,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051276,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090435,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons5
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5171@1,KOG0864@2759
Ec32 ortholog descriptionRan binding domain
Ec32 orthologEc-10_001300.1
Cds size1485
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig759.18790.1prot_Ecto-sp13_S_contig759.18790.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig759 3909..7654 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464027.9406798-UTR-Ecto-sp13_S_contig759:3315..39081681464027.9406798-UTR-Ecto-sp13_S_contig759:3315..3908Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig759 3316..3908 -
1681464028.0255644-UTR-Ecto-sp13_S_contig759:7654..76691681464028.0255644-UTR-Ecto-sp13_S_contig759:7654..7669Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig759 7655..7669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464027.954769-CDS-Ecto-sp13_S_contig759:3908..40791681464027.954769-CDS-Ecto-sp13_S_contig759:3908..4079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig759 3909..4079 -
1681464027.9657364-CDS-Ecto-sp13_S_contig759:5263..54071681464027.9657364-CDS-Ecto-sp13_S_contig759:5263..5407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig759 5264..5407 -
1681464027.9760153-CDS-Ecto-sp13_S_contig759:5901..60381681464027.9760153-CDS-Ecto-sp13_S_contig759:5901..6038Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig759 5902..6038 -
1681464027.9865851-CDS-Ecto-sp13_S_contig759:6296..72431681464027.9865851-CDS-Ecto-sp13_S_contig759:6296..7243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig759 6297..7243 -
1681464028.0061-CDS-Ecto-sp13_S_contig759:7568..76541681464028.0061-CDS-Ecto-sp13_S_contig759:7568..7654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig759 7569..7654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig759.18790.1

>prot_Ecto-sp13_S_contig759.18790.1 ID=prot_Ecto-sp13_S_contig759.18790.1|Name=mRNA_Ecto-sp13_S_contig759.18790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=495bp
MRKRGADGETDSQEVIANRRKARVSGRFRQSLEAKPATTAPSAFAGMAGI
TFNPGFDDGAGTSGRPATNTFSLGAAPTSAAAGNFKFGSGASGEPTGGGP
TGVATAGFSFLNKPPAATPAAAFSKPPVMPKASSPPVPVAASPDTASSTL
DSARWVGGAFGEGKTAVQGARLNKRFLSWVSNHLAEGELFLDSGMREYAA
CAAEIRDRANHAEAGAVSTTAFLHPRGSAAAIPPPRTVQKLSDDSMSKVA
EASVSTATPLVTAPASAPSPVVKSTPAFSFSAPSALPAAPSGQRFSFAVP
SAPAPGSTSGALTSVAPPATSPSGGFKFDSGGLGAVGSSAGAFNGFKVPS
GVAIPPPVAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRVKLF
RFKMEDKTWGDMGVGMLRLMKHSTNDSRRLVLRNDMGKVLLNAAVYKGMS
VTKAKKMIKFAANVGDGLTSFMVKVTADEIDDLHTRVVGLVPRS*
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mRNA from alignment at Ecto-sp13_S_contig759:3316..7669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig759.18790.1 ID=mRNA_Ecto-sp13_S_contig759.18790.1|Name=mRNA_Ecto-sp13_S_contig759.18790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig759:3316..7669- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGCTGTGTACTATGCGGAAAAGAGGTGCCGATGGAGAAACGGACTC
CCAAGAAGTCATTGCCAATCGGAGAAAGGCACGCGTATCTGGACGGTTTA
GGTATGTGGTGCGTCCTGCTTTCAATTCCGTTGTGGTTTTGCCCAATCAG
CGCCCGGTGTGTGTCTCTACATTACATTACACCGGCAGCCTCGATACATG
TAGTGGACACCCACGATATTCTCCCTGCTACCCCGCCATCTCTCATTGCG
GTGCTGAGAACAAAACTGACGGTTGTTCGCTGAATTAATTTGATCGGGCC
ATCCACTCCAACCACAGCAAGGTAGTGAGTGTTGTTTAGGATTTCCTTCG
CAGACCCAAGCAAGAAATGGCGTTCAAATTTCAATACAGCAGTACCGACC
ATCGGCCTCCCCCCTCCCTCGGGCAGGCAATCCCTCGAAGCCAAACCTGC
CACGACTGCCCCTTCAGCATTCGCTGGGATGGCAGGGATCACCTTTAATC
CCGGTTTCGATGACGGAGCGGGTACGTCAGGCCGGCCCGCTACAAACACG
TTTTCTCTGGGCGCGGCACCAACCTCTGCCGCTGCGGGTAACTTTAAGTT
TGGGTCGGGGGCATCAGGTGAGCCCACAGGAGGAGGTCCTACCGGAGTCG
CTACGGCTGGGTTCTCCTTTCTGAACAAACCACCGGCGGCCACCCCGGCA
GCTGCTTTTTCTAAGCCGCCAGTTATGCCGAAGGCAAGCTCCCCGCCAGT
CCCTGTTGCAGCATCTCCAGACACCGCTTCATCGACACTGGACAGCGCTC
GCTGGGTTGGGGGGGCATTTGGCGAGGGCAAAACTGCTGTGCAAGGCGCC
CGCTTGAATAAACGATTCTTGAGCTGGGTATCCAACCATCTCGCTGAGGG
CGAGTTGTTCCTGGACAGCGGCATGAGGGAGTATGCGGCCTGCGCTGCCG
AAATTCGTGATCGTGCCAACCACGCTGAGGCCGGAGCGGTGTCAACTACG
GCGTTCCTTCACCCGCGTGGGTCTGCCGCGGCTATACCTCCGCCTCGAAC
CGTGCAGAAACTCTCGGATGATTCAATGTCTAAGGTAGCTGAAGCGAGCG
TTTCAACCGCCACCCCTCTCGTCACAGCCCCTGCTTCGGCGCCGTCTCCG
GTTGTGAAGTCAACGCCAGCCTTTTCCTTTTCAGCGCCGTCAGCTCTTCC
AGCAGCTCCATCTGGGCAGCGTTTTTCTTTTGCAGTTCCTTCAGCCCCTG
CTCCCGGTTCTACCTCTGGAGCACTTACATCCGTCGCCCCGCCGGCGACG
TCGCCATCGGGTGGATTCAAGTTTGACAGCGGGGGATTGGGTGCCGTCGG
CTCATCTGCTGGTGCCTTCAACGGTGAGAGTACGACGGTAGACTACATGA
TTCCTCACCTGTTCATGCCCACTCCTGGTACTGCTATTGCATCTGCATCT
GAAACACGCGGAAGGTTGAGAGAATTTACGAACTTCTGGTGTTGAGTATC
AAGAACATGCGAGTACGGTTGTTTTCAGTCTACAGTTCGGTTGCTTTGGC
CGAGGTGCGCATGCGGTGTCCTTCCTGATTGTCATGTTTCCTTATTTCTC
GACAACACTCGCTGTCGGTCGACCCATATAGGCTTCAAAGTACCTTCCGG
AGTAGCAATCCCACCACCGGTAGCTGCGGGGAGCTCTGCGGCCGACGCAG
AAGAGGACGGAATGCCAAAGGAAGACCCGTCAAAGCTGGAAAGAGCACCC
GGAGAAGAGAACGAAGAGGTGCCGAAAAAAGAAAACCGCTCAGAAGTTCC
GCCGCGTTGCCTCATATATTGCGGAACGGGCGCATATCGGAACTACTCCA
ATTTCGATGGCAGGGCGATCACCTGGACAACCTAGCCCAGGAGTGTTCTC
TTTCCGCCGTACCTCTCGTATCGAACACCAGCAAGGAATATCGAGTACAC
GACACGAAGATTGGGCTTGGGGCGTGCTTTTCGACGATGTTCCCTCACGA
ATTTTGCAATTTAGCTCTTGTTGTCATGCCGGAAGCGTTGATCACGGAAC
CGAGCATAGAACCGAACAACATGGAGTTATTAAACGGTTTGGTCGTTTTG
CCCATTGGTGGAATTATCAGGTATCAATATTTACTCCTTTGGTAAGATGT
TGAGGGCCTCGTGCGCCCATGTGGATGACAATCCCTGTTGCCCTGCCGCA
TCTGTACTCTTACCCGGCTTTTAAATTTTCCTTGCCCACGCTGCGTGTTG
TACTTCCCGCAGGTAGTGGGTACTTTCCGGGTGAAGCTTTTCCGCTTCAA
GATGGAGGACAAGACATGGGGCGACATGGGAGTGGGAATGTTGCGTCTGA
TGAAGCATTCGACCAATGATTCCCGGCGACTTGTTCTCCGAAACGATATG
GGCAAGGTGAGGTCGTAGCTTGTTTTGTGCAGTGCCAACGAGTTTTATGA
GCACCCCCGTGTAAGATAACGGTTTACGTGAGAATGTGGTGTGGCGGGGT
CTAGAGAGGAACAAAACGCAAACAGACCCCCATGGTCATTTCGATGATTT
CGATGTACCTGCCGAGATTAGCGCTCAACTCAGACAGACAGCTAGCACTC
GTGGGTCCCTTCAAGATCAAGGACTTGGTTTTTCCTCGTATAGAGCTTAT
GTTTGTAAGACAAATGTGGGTCTGTGGATGTACGAGCTAGCTCCATTATG
AGAATGGAAGCATGCACATGTTGGGGTCATCGCACGTGGGTGCATGAAAA
TAGCAAGAACCGAATGATGCAGGTCTATCTCGTAAGTGGGGGTGTCGGAA
TCATCGCGCAGTGCTGCGAAAACCCCAGAAAAAGAAATTGGGCGTGAAGT
TGTGTGCTACCGCGAACGTCATTGCGCTGTATTCGTCGCAGTGCTGACAT
TTTGCCAATTCATTGAGAGCGAGCTCCACTGCTGCTTTGGAGTAGGACCG
TCGCAGACCACACGTGAAAATGCAGAAAGTGTTGTCATTGAATCGGTCCG
CGTTATCCATCACCAAGCAAAGACGCCAAGAATCTCGCGAACTTTCACCT
GCATCTAGCCTGTTGGCACTGACCACGTGACGGAAGGGTCGAACGAGGAA
AATATAGCAGCAACCAAAACACGTTCTTCGTTCATGGCACCTGAACAAGC
TCATTTACCTTGTTTGCCGCACTACAGTACGCACTGTACATAACCTTAGC
GCCTCATCTATGCTGGTGTATATTGTGCACCGCACACACCGAAGTGGTCG
CATAGGTTTGCGGATTTTGAAACTCCCAGCATCGCGGCTGCCGGGGACTT
CGATCAGTATCGCACGTATATGGAGTTCTCACACATGGGTGTGCGTTGAG
AAGAATCAGGTATCGGAGTCATTGCACGGCGGTGGGATAAACCGTCAAGA
ATCGAATTATTTCAAGAGCCTTTCACAAGGTTGCGATGAGTCACATCGGT
GCGTTGATCTCCTTGACTTACAGGCGTCAGTCAAGTTGTGCGCAAAGCTG
GGAATATCGAATATCGCGATAGTCAGCGTGGAAACACATTCCAATCCCAA
AGAATGATATCCCTCCCCCCCCTCCCTCCTCGCCTGCCAGGTGCTTCTCA
ACGCGGCAGTGTACAAAGGAATGTCAGTGACCAAGGCAAAGAAGATGATC
AAGTTCGCGGCCAACGTCGGTGATGGGCTTACATCTTTTATGGTGAAGGT
CACCGCTGACGAAATTGACGATCTCCACACCCGCGTGGTGGGGCTGGTGC
CTCGGTCATAAAGTATGAAGTGACTGTCCTTTACTTGAGGGTGCATGGGA
GTGTACCGTGATAGACTGACTCCTAGTCGCTGGTACGGGTGGTTTTATTT
GTGGTACTTCATGTAGCTGTGAGACGTCGAAGGGACGTAAAATCCTTGGA
GATAAGTTAGAGACGGGTGTGAAGCCATTTAATGGTATGGTTTGCTCCAG
GTTTGGCTATTTAGTGGTTTGGTGCTTCTTTTCTTCGTGCACCTTACAGC
AGTAGTGATTTTGTGTTGATGCTTGGGCCTCAAAGACACCTGTCACAGCA
GCATTGTACTAAGTATCGGACCATGAACTCACGCAGCTGTTCTAGCGTCG
ATGAGTTACGATAGCCATGCTGCCGGCTACCTTTGTCGCGACTATAATTC
ACTGAGCAATCCAAAGACTCGCATGATAGTACTTGCTCTGGGAGACTTCA
AGGCATGCAGATGACAGTAAATGTGGCGTGGACCTCTCCACGCGCCGGAG
CGCGCAAACTCCTGTAAATTGCCGTTGGACTGTTTTGATCTCGGTCTGAG
CTCAAGAATTTTAAGTGTTGAACCTATATCGCAACCACGCAAGTAGTACC
GAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig759:3316..7669-

>mRNA_Ecto-sp13_S_contig759.18790.1 ID=mRNA_Ecto-sp13_S_contig759.18790.1|Name=mRNA_Ecto-sp13_S_contig759.18790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1485bp|location=Sequence derived from alignment at Ecto-sp13_S_contig759:3316..7669- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAAAAGAGGTGCCGATGGAGAAACGGACTCCCAAGAAGTCATTGC
CAATCGGAGAAAGGCACGCGTATCTGGACGGTTTAGGCAATCCCTCGAAG
CCAAACCTGCCACGACTGCCCCTTCAGCATTCGCTGGGATGGCAGGGATC
ACCTTTAATCCCGGTTTCGATGACGGAGCGGGTACGTCAGGCCGGCCCGC
TACAAACACGTTTTCTCTGGGCGCGGCACCAACCTCTGCCGCTGCGGGTA
ACTTTAAGTTTGGGTCGGGGGCATCAGGTGAGCCCACAGGAGGAGGTCCT
ACCGGAGTCGCTACGGCTGGGTTCTCCTTTCTGAACAAACCACCGGCGGC
CACCCCGGCAGCTGCTTTTTCTAAGCCGCCAGTTATGCCGAAGGCAAGCT
CCCCGCCAGTCCCTGTTGCAGCATCTCCAGACACCGCTTCATCGACACTG
GACAGCGCTCGCTGGGTTGGGGGGGCATTTGGCGAGGGCAAAACTGCTGT
GCAAGGCGCCCGCTTGAATAAACGATTCTTGAGCTGGGTATCCAACCATC
TCGCTGAGGGCGAGTTGTTCCTGGACAGCGGCATGAGGGAGTATGCGGCC
TGCGCTGCCGAAATTCGTGATCGTGCCAACCACGCTGAGGCCGGAGCGGT
GTCAACTACGGCGTTCCTTCACCCGCGTGGGTCTGCCGCGGCTATACCTC
CGCCTCGAACCGTGCAGAAACTCTCGGATGATTCAATGTCTAAGGTAGCT
GAAGCGAGCGTTTCAACCGCCACCCCTCTCGTCACAGCCCCTGCTTCGGC
GCCGTCTCCGGTTGTGAAGTCAACGCCAGCCTTTTCCTTTTCAGCGCCGT
CAGCTCTTCCAGCAGCTCCATCTGGGCAGCGTTTTTCTTTTGCAGTTCCT
TCAGCCCCTGCTCCCGGTTCTACCTCTGGAGCACTTACATCCGTCGCCCC
GCCGGCGACGTCGCCATCGGGTGGATTCAAGTTTGACAGCGGGGGATTGG
GTGCCGTCGGCTCATCTGCTGGTGCCTTCAACGGCTTCAAAGTACCTTCC
GGAGTAGCAATCCCACCACCGGTAGCTGCGGGGAGCTCTGCGGCCGACGC
AGAAGAGGACGGAATGCCAAAGGAAGACCCGTCAAAGCTGGAAAGAGCAC
CCGGAGAAGAGAACGAAGAGGTAGTGGGTACTTTCCGGGTGAAGCTTTTC
CGCTTCAAGATGGAGGACAAGACATGGGGCGACATGGGAGTGGGAATGTT
GCGTCTGATGAAGCATTCGACCAATGATTCCCGGCGACTTGTTCTCCGAA
ACGATATGGGCAAGGTGCTTCTCAACGCGGCAGTGTACAAAGGAATGTCA
GTGACCAAGGCAAAGAAGATGATCAAGTTCGCGGCCAACGTCGGTGATGG
GCTTACATCTTTTATGGTGAAGGTCACCGCTGACGAAATTGACGATCTCC
ACACCCGCGTGGTGGGGCTGGTGCCTCGGTCATAA
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