mRNA_Ecto-sp13_S_contig759.18789.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig759.18789.1
Unique NamemRNA_Ecto-sp13_S_contig759.18789.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: D7G6C2_ECTSI (Mitogen-activated protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6C2_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 1.320e-113
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP 507
            +Y   D  ETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVD+WAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP
Sbjct:   88 IYLTFDHMETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDMWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: A0A835YTC1_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTC1_9STRA)

HSP 1 Score: 311 bits (796), Expect = 1.030e-103
Identity = 145/169 (85.80%), Postives = 157/169 (92.90%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP 507
            +Y   D  ETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSA LLHRDIKPSNLLLNSDCH+KLCDFGLCR++AE AGPQPHLTDYVATRWYRAPEILLGSPRYTKGVD+WAVGCILGEML+GRP FPGTSTMNQ+EKI+E TGRP PEDV +++SP+A TMLESIPP
Sbjct:   88 IYLTFDHMETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSAQLLHRDIKPSNLLLNSDCHIKLCDFGLCRSVAEAAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDMWAVGCILGEMLNGRPIFPGTSTMNQVEKILELTGRPCPEDVSAVRSPYAATMLESIPP 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: A0A7S2V2D6_9STRA (Mitogen-activated protein kinase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2D6_9STRA)

HSP 1 Score: 305 bits (782), Expect = 8.730e-102
Identity = 146/169 (86.39%), Postives = 156/169 (92.31%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP 507
            +Y   D  ETDLHAVIRANILEEIHKKYIIYQL+KALKFMHSA+LLHRDIKPSNLLLNSDCHVKLCDFGLCR++AET+GP P LTDYVATRWYRAPEILLGS RYTKGVD WAVGCILGEM+SGRP FPGTSTMNQLEKI+E TGRPS EDV+SI+SPFA TMLESIPP
Sbjct:   88 IYLTFDHMETDLHAVIRANILEEIHKKYIIYQLLKALKFMHSAELLHRDIKPSNLLLNSDCHVKLCDFGLCRSVAETSGPSPVLTDYVATRWYRAPEILLGSTRYTKGVDFWAVGCILGEMISGRPIFPGTSTMNQLEKIIEVTGRPSSEDVESIRSPFAATMLESIPP 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: A0A8K1FBJ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBJ5_PYTOL)

HSP 1 Score: 288 bits (737), Expect = 5.640e-95
Identity = 133/169 (78.70%), Postives = 152/169 (89.94%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP 507
            +Y   D  ETDLHAVIRANILEEIHKKYIIYQL+K+LK+MH+A+LLHRDIKPSNLLLNSDCH KLCDFGLCR++AET GP P LTDYVATRWYRAPEILLGS RYTK VD+WAVGCI+ EM +GRP FPGTSTMNQLE+I++ TG P+P+D++SIKSPFA TMLES+PP
Sbjct:   88 IYLVFDFMETDLHAVIRANILEEIHKKYIIYQLLKSLKYMHTAELLHRDIKPSNLLLNSDCHTKLCDFGLCRSVAETTGPNPVLTDYVATRWYRAPEILLGSTRYTKAVDMWAVGCIIAEMATGRPAFPGTSTMNQLERILDVTGPPTPDDIESIKSPFANTMLESLPP 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: W4FMN6_9STRA (Mitogen-activated protein kinase n=6 Tax=Aphanomyces TaxID=100860 RepID=W4FMN6_9STRA)

HSP 1 Score: 288 bits (736), Expect = 1.030e-94
Identity = 134/169 (79.29%), Postives = 150/169 (88.76%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP 507
            +Y   D  ETDLHAVIRANILEEIHKKY+ YQL+KALKFMHSADLLHRDIKPSNLLLN+DCH KLCDFGLCR+++E  GP P LTDYVATRWYRAPEILLGS RYTK VD+WAVGCI+ EM+SGRPTFPGTSTMNQLE+I+E TG P+  D++SIKSPFA TMLES+PP
Sbjct:   88 IYLVFDFMETDLHAVIRANILEEIHKKYVTYQLIKALKFMHSADLLHRDIKPSNLLLNADCHTKLCDFGLCRSVSELGGPSPVLTDYVATRWYRAPEILLGSTRYTKAVDMWAVGCIVAEMVSGRPTFPGTSTMNQLERILEVTGAPTAADIESIKSPFAATMLESLPP 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: A0A067D7C4_SAPPC (Mitogen-activated protein kinase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D7C4_SAPPC)

HSP 1 Score: 286 bits (733), Expect = 2.750e-94
Identity = 133/169 (78.70%), Postives = 150/169 (88.76%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP 507
            +Y   D  ETDLHAVIRANILEEIHKKY+ YQL+KALKFMHSADLLHRDIKPSNLLLN+DCH KLCDFGLCR+++E  GP P LTDYVATRWYRAPEILLGS RYTK VD+WAVGCI+ EM++GRPTFPGTSTMNQLE+I+E TG PS  D+++IKSPFA TMLES+PP
Sbjct:   88 IYLVFDFMETDLHAVIRANILEEIHKKYVTYQLIKALKFMHSADLLHRDIKPSNLLLNADCHTKLCDFGLCRSVSEIGGPNPVLTDYVATRWYRAPEILLGSTRYTKAVDMWAVGCIVAEMVTGRPTFPGTSTMNQLERILEVTGAPSTTDIENIKSPFAATMLESLPP 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: A0A812R7D1_SYMMI (Mitogen-activated protein kinase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R7D1_SYMMI)

HSP 1 Score: 285 bits (728), Expect = 1.480e-93
Identity = 131/169 (77.51%), Postives = 153/169 (90.53%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIPP 507
            +Y   D  ETDLHAVIRA IL++IHKKYII+QL+KALK++HSADLLHRD+KPSNLLLNSDCHVK+CDFGLCR+IAET+GP P LTDYVATRWYRAPEILLGS RYT GVDIWAVGCILGEM++GRP FPGTSTMNQ+E+IME TG P  +D+++I SP+AGTML+S+PP
Sbjct:   88 IYLTFDHMETDLHAVIRAGILQDIHKKYIIWQLLKALKYLHSADLLHRDVKPSNLLLNSDCHVKICDFGLCRSIAETSGPAPVLTDYVATRWYRAPEILLGSTRYTFGVDIWAVGCILGEMINGRPMFPGTSTMNQIERIMEVTGMPPKKDIEAIASPYAGTMLDSLPP 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: H3G9R4_PHYRM (Mitogen-activated protein kinase n=18 Tax=Peronosporaceae TaxID=4777 RepID=H3G9R4_PHYRM)

HSP 1 Score: 280 bits (716), Expect = 7.580e-92
Identity = 130/168 (77.38%), Postives = 149/168 (88.69%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESIP 504
            +Y   D  ETDLHAVIRANILEEIHKKYIIYQL+K+LK+MH+A+LLHRDIKPSNLLLNSDCH KLCDFGLCR++AE +GP P LTDYVATRWYRAPEILLGS RY K VD+WAVGCI+ EM +GRP FPGTSTMNQLE+I++ TG PS +D++SIKSPFA TMLES+P
Sbjct:   88 IYLVFDFMETDLHAVIRANILEEIHKKYIIYQLLKSLKYMHTAELLHRDIKPSNLLLNSDCHTKLCDFGLCRSVAEISGPNPVLTDYVATRWYRAPEILLGSTRYAKSVDMWAVGCIVAEMATGRPAFPGTSTMNQLERILDVTGSPSQDDIESIKSPFANTMLESLP 255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: A0A7S2CJN2_9STRA (Mitogen-activated protein kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJN2_9STRA)

HSP 1 Score: 280 bits (717), Expect = 1.480e-91
Identity = 134/170 (78.82%), Postives = 150/170 (88.24%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAET---AGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESI 501
            +Y   D  ETDLHAVIRANILEEIHKKYIIYQL+K+LKFMHS +LLHRDIKPSNLLLNSDCHVKLCDFGLCR++AET   +GP P LTDYVATRWYRAPEILLGS  YTKGVD+WAVGCILGEML G+P FPGTSTMNQLEKI+E TG P P+ V+++KSPFA TML+S+
Sbjct:   88 IYLTFDHMETDLHAVIRANILEEIHKKYIIYQLLKSLKFMHSGELLHRDIKPSNLLLNSDCHVKLCDFGLCRSVAETLQNSGPNPVLTDYVATRWYRAPEILLGSTHYTKGVDMWAVGCILGEMLLGKPLFPGTSTMNQLEKIIEVTGEPHPDAVENMKSPFAATMLQSL 257
[Close]
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Match: F0Y842_AURAN (Mitogen-activated protein kinase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y842_AURAN)

HSP 1 Score: 280 bits (717), Expect = 2.320e-91
Identity = 131/167 (78.44%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:    1 MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDIKPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILLGSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPEDVQSIKSPFAGTMLESI 501
            +Y   D  ETDLHAVIRA ILE+IHKKYIIYQL+KALK+MHS DLLHRDIKPSNLLLNSDCHVKLCDFGLCR++AE  GP P LTDYVATRWYRAPEILLGSP YTKGVD+WAVGCILGEML+G+P FPGTST+NQLEK++E TG+PS EDV ++ SP+A  ML+SI
Sbjct:   94 IYLTFDHMETDLHAVIRAAILEDIHKKYIIYQLLKALKYMHSGDLLHRDIKPSNLLLNSDCHVKLCDFGLCRSVAEVEGPSPVLTDYVATRWYRAPEILLGSPVYTKGVDMWAVGCILGEMLNGKPIFPGTSTVNQLEKVLELTGKPSKEDVDAVGSPYAAQMLDSI 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig759.18789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6C2_ECTSI1.320e-11395.86Mitogen-activated protein kinase n=2 Tax=Ectocarpu... [more]
A0A835YTC1_9STRA1.030e-10385.80Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0A7S2V2D6_9STRA8.730e-10286.39Mitogen-activated protein kinase n=1 Tax=Fibrocaps... [more]
A0A8K1FBJ5_PYTOL5.640e-9578.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4FMN6_9STRA1.030e-9479.29Mitogen-activated protein kinase n=6 Tax=Aphanomyc... [more]
A0A067D7C4_SAPPC2.750e-9478.70Mitogen-activated protein kinase n=3 Tax=Saprolegn... [more]
A0A812R7D1_SYMMI1.480e-9377.51Mitogen-activated protein kinase n=1 Tax=Symbiodin... [more]
H3G9R4_PHYRM7.580e-9277.38Mitogen-activated protein kinase n=18 Tax=Peronosp... [more]
A0A7S2CJN2_9STRA1.480e-9178.82Mitogen-activated protein kinase n=1 Tax=Florencie... [more]
F0Y842_AURAN2.320e-9178.44Mitogen-activated protein kinase n=1 Tax=Aureococc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig759contigEcto-sp13_S_contig759:896..2300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score289.3
Seed ortholog evalue1.2e-75
Seed eggNOG ortholog157072.XP_008879469.1
Preferred nameLMPK
Model size507
KEGG koko:K19603
KEGG Pathwayko04657,map04657
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000082,GO:0000086,GO:0000165,GO:0000226,GO:0000278,GO:0000302,GO:0000307,GO:0001101,GO:0002237,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0004707,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006325,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007093,GO:0007098,GO:0007099,GO:0007154,GO:0007165,GO:0007166,GO:0007186,GO:0007190,GO:0007264,GO:0007265,GO:0007275,GO:0007346,GO:0007584,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009607,GO:0009617,GO:0009636,GO:0009893,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010389,GO:0010468,GO:0010564,GO:0010604,GO:0010628,GO:0010646,GO:0010948,GO:0012505,GO:0014070,GO:0015030,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016604,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019904,GO:0019932,GO:0019933,GO:0019935,GO:0022402,GO:0022414,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030154,GO:0030330,GO:0030332,GO:0030587,GO:0031023,GO:0031152,GO:0031154,GO:0031410,GO:0031570,GO:0031571,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0031982,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033273,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035556,GO:0035690,GO:0036211,GO:0040011,GO:0042127,GO:0042221,GO:0042330,GO:0042493,GO:0042594,GO:0042770,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043326,GO:0043327,GO:0043412,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044671,GO:0044764,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044839,GO:0044843,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046777,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048837,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051276,GO:0051298,GO:0051321,GO:0051336,GO:0051342,GO:0051344,GO:0051346,GO:0051593,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060255,GO:0060968,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0070925,GO:0071156,GO:0071158,GO:0071241,GO:0071496,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0072718,GO:0090068,GO:0090304,GO:0090702,GO:0097124,GO:0097327,GO:0097366,GO:0097472,GO:0097708,GO:0098534,GO:0098630,GO:0098743,GO:0099120,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902170,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902531,GO:1902554,GO:1902749,GO:1902806,GO:1902807,GO:1902911,GO:1903047,GO:1990234,GO:2000045,GO:2000134
Exons2
EggNOG free text desc.MAP kinase activity
EggNOG OGsKOG0660@1,KOG0660@2759
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-01_009920.1
EC2.7.11.24
Cds size507
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464027.8957212-CDS-Ecto-sp13_S_contig759:895..13031681464027.8957212-CDS-Ecto-sp13_S_contig759:895..1303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig759 896..1303 +
1681464027.91017-CDS-Ecto-sp13_S_contig759:2201..23001681464027.91017-CDS-Ecto-sp13_S_contig759:2201..2300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig759 2202..2300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig759.18789.1prot_Ecto-sp13_S_contig759.18789.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig759 896..2300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig759.18789.1

>prot_Ecto-sp13_S_contig759.18789.1 ID=prot_Ecto-sp13_S_contig759.18789.1|Name=mRNA_Ecto-sp13_S_contig759.18789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MYCPADDTETDLHAVIRANILEEIHKKYIIYQLVKALKFMHSADLLHRDI
KPSNLLLNSDCHVKLCDFGLCRNIAETAGPQPHLTDYVATRWYRAPEILL
GSPRYTKGVDIWAVGCILGEMLSGRPTFPGTSTMNQLEKIMESTGRPSPE
DVQSIKSPFAGTMLESIPP
back to top

mRNA from alignment at Ecto-sp13_S_contig759:896..2300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig759.18789.1 ID=mRNA_Ecto-sp13_S_contig759.18789.1|Name=mRNA_Ecto-sp13_S_contig759.18789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig759:896..2300+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATTGCCCTGCCGACGACACAGAGACCGACCTCCACGCCGTCATTCG
AGCCAACATTCTGGAGGAGATTCACAAGAAATACATCATCTACCAGTTGG
TGAAAGCGCTCAAGTTTATGCACTCAGCTGATCTTCTGCACCGAGATATC
AAGCCTAGCAATCTGCTTCTTAATAGCGATTGCCACGTGAAGCTGTGCGA
CTTCGGTCTGTGCAGAAACATCGCCGAGACAGCTGGGCCTCAACCACACT
TGACAGATTATGTCGCTACTCGTTGGTATCGGGCCCCTGAGATTCTGCTC
GGATCGCCTCGCTACACGAAAGGAGTCGACATTTGGGCGGTTGGGTGCAT
TCTGGGAGAAATGTTGAGTGGCAGGCCAACTTTTCCTGGGACTTCCACGA
TGAACCAGGTGTGACAACGCAGGGTATTGCATGGACAATGTCGATGCTAT
GTAGGTCCATGTTATTGGTCCCCTCTGGTACGTGCTCAAGAGGGCACGTG
GATTCAAATACGTGATGCACACCCCCCCTCCCCCTGATCCTCCCCCCCCA
TTTTTCAGGCGCTTAATCCAGTTTGATCAAGGCGTTTTTTGTATAGGACT
TAGAGTAGTTATAATAAAGCCTTTATCTTCCATAATGTAAAGGCTTTAGT
GTAACATTACCCATATATAAAATTGAGAGGTGAATATGACCACACCAAAT
CCTAGACCTTTCTTTGTAGCCCCTTTTAGCAGCAGCAATCCATAGTCTTC
CTGCTACATTCCGCAAGGGAGGGTAAGAGCAAGCAAGCACCCTGTCTGCT
GTTGTTCCCTACAGAGAAGACAGGGTTCACAGCAGCAGCAGCATCATATA
TATAGAGGCTTTAAATACATACATACAGCTTAAATCTATACATGCGATGT
ACTTACAACACACAACGGTCTACACCTATACTTCAAGAGGAGGAAAGAGA
GGCGTAAGGTTCAGAATAGCCATATGCATACTAGATACCATATAATAGAA
AATGTATATAGGTTATACTTTACCACACTATTTCCTACATATATCTATGT
ACACGGTATATAACAGGACCCCCCCCCCACCCCCCCCTGATCAGTTTTGG
GGTATGCATCACGTATTGAATACACGTATTTGAATACACGTGCCCTCTTG
ACGTGCTTCTCTTTTAGTTTCAGCGACTGCCAAGCATGTATTACCAATCG
TTGGGTATCGCCGCAAACTTCTAAGCTGACGATAATGTGTGGGGGGCTCC
TTTCCAACATGATCCATTTGGCGTGTCTTGTTTTCTGCTGGTATCGACGG
TCCCAGCTGGAAAAAATAATGGAATCTACCGGACGACCTTCACCGGAGGA
TGTCCAGTCCATCAAATCTCCGTTCGCCGGGACCATGCTCGAATCCATCC
CACCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig759:896..2300+

>mRNA_Ecto-sp13_S_contig759.18789.1 ID=mRNA_Ecto-sp13_S_contig759.18789.1|Name=mRNA_Ecto-sp13_S_contig759.18789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig759:896..2300+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATTGCCCTGCCGACGACACAGAGACCGACCTCCACGCCGTCATTCG
AGCCAACATTCTGGAGGAGATTCACAAGAAATACATCATCTACCAGTTGG
TGAAAGCGCTCAAGTTTATGCACTCAGCTGATCTTCTGCACCGAGATATC
AAGCCTAGCAATCTGCTTCTTAATAGCGATTGCCACGTGAAGCTGTGCGA
CTTCGGTCTGTGCAGAAACATCGCCGAGACAGCTGGGCCTCAACCACACT
TGACAGATTATGTCGCTACTCGTTGGTATCGGGCCCCTGAGATTCTGCTC
GGATCGCCTCGCTACACGAAAGGAGTCGACATTTGGGCGGTTGGGTGCAT
TCTGGGAGAAATGTTGAGTGGCAGGCCAACTTTTCCTGGGACTTCCACGA
TGAACCAGCTGGAAAAAATAATGGAATCTACCGGACGACCTTCACCGGAG
GATGTCCAGTCCATCAAATCTCCGTTCGCCGGGACCATGCTCGAATCCAT
CCCACCG
back to top