mRNA_Ecto-sp13_S_contig7582.18781.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Match: Q8QNN8_ESV1K (EsV-1-23 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN8_ESV1K) HSP 1 Score: 592 bits (1527), Expect = 1.020e-207 Identity = 321/377 (85.15%), Postives = 344/377 (91.25%), Query Frame = 1
Query: 1 MATSQNYDNDLARAVAMAMKKSGITIAPVPAQKAKKNSAREAXXXXXX---QARALLRLQEDLV--QKRVGAEGVVCRSGRPRAKRVRYDPSTAKKRVSPSKSAPKILDPTRSTVDDRVETARTRARGRKQESANKNQCNVIEFMKRVADPAKNKEEKYANTKGLLVAHGMGSGKTLTSLWVAKEYVTKNRVKFVNILAPNAAVGEFIDSFERAGITPRIAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGIKYDALAKAGVSFLMLLSGTPAPNTPSEIVPLINLLCRKKKDHWTRQKWDKSTTTLSEKKRVLRDKVSTYNIGPKYNYLRERETEFPSANNFPGFKVSTRNVKLSPSQNAAYMKLDKTVKK 1116
MAT NY+NDLA AVA+AMKK+GIT APV A+K KKNS REA XXXX QARALLRLQEDLV +KRV G+V RSGRPRAKRVRYDPSTAKKRVSPSKSAP+IL+PTRSTVD RV+TARTRA+GR QE+ KNQCNVIEFMKRVADP +NKEEKYANTKGLL+AHGMGSGKTLTSLWVAKEY+ KNRVKFVNILAPN AVGEFIDSFERAGITP+ AGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTG+KYDALAKA VS+LMLLSGTPAPN PSEIVPLINLL RK++DHWTRQKWDKSTTT SEKK+ LRDKVS YNIGPKYNYLR+R TEFPSANNFPG+KVSTRNVKLSPSQNAAYMKL+KTVKK
Sbjct: 1 MATLPNYENDLAIAVAIAMKKNGITFAPVSAEKEKKNSVREAEAXXXXXXXQARALLRLQEDLVPSKKRVDVGGMVGRSGRPRAKRVRYDPSTAKKRVSPSKSAPEILNPTRSTVDARVDTARTRAQGRNQETQKKNQCNVIEFMKRVADPTRNKEEKYANTKGLLIAHGMGSGKTLTSLWVAKEYIAKNRVKFVNILAPNVAVGEFIDSFERAGITPQTAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGMKYDALAKADVSYLMLLSGTPAPNAPSEIVPLINLLHRKREDHWTRQKWDKSTTTPSEKKKFLRDKVSMYNIGPKYNYLRQRGTEFPSANNFPGYKVSTRNVKLSPSQNAAYMKLNKTVKK 377
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Match: D8LP58_ECTSI (Helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP58_ECTSI) HSP 1 Score: 577 bits (1486), Expect = 1.530e-201 Identity = 311/377 (82.49%), Postives = 334/377 (88.59%), Query Frame = 1
Query: 1 MATSQNYDNDLARAVAMAMKKSGITIAPVP--AQK-AKKNSAREAXXXXXXQARALLRLQEDLV--QKRVGAEGVVCRSGRPRAKRVRYDPSTAKKRVSPSKSAPKILDPTRSTVDDRVETARTRARGRKQESANKNQCNVIEFMKRVADPAKNKEEKYANTKGLLVAHGMGSGKTLTSLWVAKEYVTKNRVKFVNILAPNAAVGEFIDSFERAGITPRIAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGIKYDALAKAGVSFLMLLSGTPAPNTPSEIVPLINLLCRKKKDHWTRQKWDKSTTTLSEKKRVLRDKVSTYNIGPKYNYLRERETEFPSANNFPGFKVSTRNVKLSPSQNAAYMKLDKTVKK 1116
M SQNY+NDLA AVA+AMKKSGIT AP P A+K KKNS +EA AR +LRLQEDLV QKRVG GVV RSGRPRAKRVRYDPS KKRV PSK APK+L+PTRSTVDDRV+TARTRA GRKQE+ +NQCNVIEFMKRVADP KNKE++YANTKGLL+AHGMGSGKTLTSLWVAKEY+ KNRVKFVNILAPN AVGEFIDSFERAGITP+IAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGIKYDALAKA VS+LMLLSGTPAPN PSEIVPLINLL RKKKD+WT+QKWDKSTTT SEKK+ LRDKVS YNIGPKYNYLR+R TEF SAN FPG+KVS RNVKLSPSQNAAY+KL+KTVKK
Sbjct: 1 MTVSQNYENDLAMAVAIAMKKSGITFAPSPISAEKDTKKNSIKEAEAKKKKIARQMLRLQEDLVSSQKRVGVGGVVGRSGRPRAKRVRYDPSAEKKRVRPSKPAPKMLNPTRSTVDDRVDTARTRALGRKQETEKRNQCNVIEFMKRVADPTKNKEKQYANTKGLLIAHGMGSGKTLTSLWVAKEYIAKNRVKFVNILAPNVAVGEFIDSFERAGITPQIAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGIKYDALAKADVSYLMLLSGTPAPNAPSEIVPLINLLYRKKKDNWTKQKWDKSTTTSSEKKKFLRDKVSMYNIGPKYNYLRKRGTEFHSANKFPGYKVSMRNVKLSPSQNAAYVKLNKTVKK 377
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Match: A0A6H5JDR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR8_9PHAE) HSP 1 Score: 280 bits (717), Expect = 1.760e-85 Identity = 159/226 (70.35%), Postives = 176/226 (77.88%), Query Frame = 1
Query: 181 VQKRVGAEGVVCRSGRPRAKRVRYDPSTAKKRVSPSKSAPKI-LDPTRSTVDDRVETARTRARGRKQESANKNQCNVIEFMKRVADPAKNKEEKYANTKGLLVAHGMGSGKTLTSLWVAKEYVTKNRVKFVNILAPNAAVGEFIDSFERAGITPRIAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGIKYDALAKAGVSFLMLLSGTPAPNTPSEIVPLIN 855
+QKRV GVV RSGRP+AKRV+YDP TAKKRVS SKSAP + LDPTRST DDRVE+A TRARGRKQE+ K +CNVI+FMKRVAD KN+E+ YANTK +VKFVNILA N AVGE I+SFERAGITP+IAGKIRVLTHD FALN+KAR+FS+SLVIVDEAHMFT IKYDALAKA VS+LMLLSGTPAPN PSEIVPLIN
Sbjct: 432 LQKRVRVGGVVGRSGRPQAKRVQYDPGTAKKRVSSSKSAPTVGLDPTRSTFDDRVESANTRARGRKQETDKKKKCNVIDFMKRVADLTKNEEKIYANTK---------------------------KVKFVNILASNVAVGELINSFERAGITPQIAGKIRVLTHDGFALNRKARKFSRSLVIVDEAHMFTAIKYDALAKADVSYLMLLSGTPAPNVPSEIVPLIN 630
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Match: A0A1Y1IQ76_KLENI (Chromodomain helicase DNA binding protein 8 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQ76_KLENI) HSP 1 Score: 65.5 bits (158), Expect = 6.950e-8 Identity = 58/219 (26.48%), Postives = 104/219 (47.49%), Query Frame = 1
Query: 472 KGLLVAHGMGSGKTLTSLWVAKEYVTKNRVKFVNILAPNAAVGEFIDSFERAGITPRIAGKIRVLTHDEFALNKKAREF--SKSLVIVDEAHMF---TGIKYDAL-AKA-GVSFLMLLSGTPAPNTPSEIVPLINLLCRKKKDHWTRQKWDK--STTTLSEKKRVLRDKVSTYNIGPKYNYLRERETEFPSANNFPGFKVSTRNVKLSPSQNAAYMKLD 1101
+GL++ G+GSGKTL+S+ A+ + VK + ++ P + + + + A K V++ + F + F L++VDEAH G + A+ A+A G + ++LL+GTP N PS+I PL N+L + T++ +D T L + L+ + + Y + E+PS +ST NV++ ++ +LD
Sbjct: 254 RGLILYFGVGSGKTLSSMAAAEALMNHGIVKSIVVVTPASLIANYKKELSKFHAK---ADKYNVMSFENFTKKAEGGTFLTKDKLLVVDEAHNLRNAAGQRSKAIFAQAKGATKVLLLTGTPVQNAPSDIAPLANMLRKHNAIPNTKESFDAHFGATGLESDQATLKSALECCML---YYAPSSSDPEYPS--------ISTENVEVKMTERQRQAQLD 458
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Match: A0A6C0KF60_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KF60_9ZZZZ) HSP 1 Score: 63.5 bits (153), Expect = 2.720e-7 Identity = 68/232 (29.31%), Postives = 104/232 (44.83%), Query Frame = 1
Query: 466 NTKGLLVAHGMGSGKTLTSLWVAKEYVTKNRVKFVNILAPNAAVGEFIDSFERAGITPRIAGKIRVLTHDEF-ALNKKAREF--SKSLVIVDEAHMFTGIKYDALAKAGV------------SFLMLLSGTPAPNTPSEIVPLINLLCRKKKDHWTRQKWDKSTTTLSEKK-RVLRD----KVSTYNIGPKYNYLRERETEFPSANNFPGFKVSTRNVKLSPSQNAAYMKLD 1101
N +GLLV HG+G+GKTLT++ ++ ++ +N V ++ P + FI E G ++ + + T F A KK + +L+I+DEAH D K GV ++LL+ TP N P EIV LI ++ D + D LS K R+L+D KVS Y K + + +FP + N F V +SP Y K++
Sbjct: 177 NARGLLVIHGVGTGKTLTAVTASQCFLQQNPAHRVIVVTPTSLQQNFIKELETYGA--KLTKRYAMYTIQGFSAAIKKGTKIPCKNTLLILDEAHNIRSEVSDDCDKVGVYARNLIECAKDAKKVLLLTATPIINRPCEIVNLIGMI-----DGEEPIEADVLNKMLSNKDDRMLKDYIGCKVSVYTRDTK-----KHDPDFPDSTNNDVFLV------MSPKYAHEYKKIE 390
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Match: A0A5J6VJP7_9VIRU (SNF2 family N-terminal domain protein n=1 Tax=Megaviridae environmental sample TaxID=1737588 RepID=A0A5J6VJP7_9VIRU) HSP 1 Score: 63.2 bits (152), Expect = 3.070e-7 Identity = 42/142 (29.58%), Postives = 74/142 (52.11%), Query Frame = 1
Query: 460 YANTKGLLVAHGMGSGKTLTSLWVAKEYVTKNRVKFVNILAPNAAVGEFIDSFERAGITPRIAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGIKYDALAKAGVSF--------LMLLSGTPAPNTPSEIVPLINLL 861
+ T+GL++ HGMGSGKTLTS+ A++ + +++ P V + +A K +++HD++ + +S L+IVDEAH+ ++ K+ V F ++LL+GTP N PS+ L+N++
Sbjct: 15 FRKTRGLILNHGMGSGKTLTSIACAEDAMKNKPNLQIHVAVPAKLVSNYEKELAKANAN---TSKYIIMSHDKY-IKWIQPPYSNILLIVDEAHI---LRNATTEKSKVFFKVARYCYKVLLLTGTPLVNYPSDASHLLNMI 149
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Match: A0A6C0F7I3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F7I3_9ZZZZ) HSP 1 Score: 60.1 bits (144), Expect = 3.010e-6 Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = 1
Query: 466 NTKGLLVAHGMGSGKTLTSLWVAKEYVTKNRVKFVNILAPNAAVGEFIDSFERAGITPRIAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGIK-------YDALAKAGVSFLMLLSGTPAPNTPSEIVPLINLLCR 867
++KGLLV HG+GSGKTLTS+ +A N K V ++ P + + + G + K +++ + A K + +++VDEAH DA KA ++LL+GTP N P++I LIN++ R
Sbjct: 24 DSKGLLVFHGLGSGKTLTSIAMAH-----NSDKEVIVIVPASLKDNYKKEIAKFGANKK---KFTIMSFEMSAKTKL--QLKNKVLVVDEAHRLRNTNRKDTKNIIDASKKA--EKIILLTGTPFVNRPNDIASLINIIAR 152
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Match: A0A0F9UZT8_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9UZT8_9ZZZZ) HSP 1 Score: 58.5 bits (140), Expect = 9.600e-6 Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 472 KGLLVAHGMGSGKTLTSLWVAKEYVTKNRVKFVNILAPNAAVGEFIDSFERAGITPRIAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTG---IKYDALAKAGVSFLMLLSGTPAPNTPSEIVPLINL 858
+GL+VAHG+GSGKTLTSL V V L N A E+ T I +I+ L + + +K R SK ++I+DEAH +Y LA + MLL+ +P N PS++ PL+N+
Sbjct: 40 EGLVVAHGLGSGKTLTSLAVIDALKQPTDVVVPASLQDNYAK-------EQRKHTSGIKLEIQSLQN----IARKRRVPSKPVLIIDEAHRARNPDTAQYRTLAASPAKKRMLLTASPIYNHPSDLAPLVNI 160 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7582.18781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7582.18781.1 >prot_Ecto-sp13_S_contig7582.18781.1 ID=prot_Ecto-sp13_S_contig7582.18781.1|Name=mRNA_Ecto-sp13_S_contig7582.18781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=372bp MATSQNYDNDLARAVAMAMKKSGITIAPVPAQKAKKNSAREAEAKKKKQAback to top mRNA from alignment at Ecto-sp13_S_contig7582:2135..3250- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7582.18781.1 ID=mRNA_Ecto-sp13_S_contig7582.18781.1|Name=mRNA_Ecto-sp13_S_contig7582.18781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7582:2135..3250- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7582:2135..3250- >mRNA_Ecto-sp13_S_contig7582.18781.1 ID=mRNA_Ecto-sp13_S_contig7582.18781.1|Name=mRNA_Ecto-sp13_S_contig7582.18781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7582:2135..3250- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |