mRNA_Ecto-sp13_S_contig758.18780.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig758.18780.1
Unique NamemRNA_Ecto-sp13_S_contig758.18780.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig758.18780.1 vs. uniprot
Match: D7FU71_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU71_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 2.760e-92
Identity = 145/202 (71.78%), Postives = 169/202 (83.66%), Query Frame = 1 
Query:    1 MARLCVFESEEDLGKFLMTNYKETQRPKLPKQSPRAQLDDEIETAAALLGYVNSNMQPWFKEDTDSILLENDVVSVRSGRYVAIHVRRGDKL-IREASRTEVEVYLQAAASILRNSTEGVDGPNSIVGLWVASDDSSVLPEVKGLVSSYFPNVQDERVVSISFRTSAPSPHGHADELPTTSHLMVC-TKSRGDLASMVNVNN 600
            MARLCVF+S ED+GKFLM NY+E+QR  +P+ SPR QL DE ETAAALLGYV SNMQPWFKEDTD++LL++DV SVRS RYVAIHVRRGDK+ ++EASRTEVEVYLQAAASIL+NST  VDGPNSI GLWV+SDD SVLPEVK L S+YF NVQD+RVVSI+FR    +  G+ D+LPTTSH M    + RGD AS++NVNN
Sbjct:    1 MARLCVFDSNEDVGKFLMANYEESQRINVPQPSPRTQLHDETETAAALLGYVYSNMQPWFKEDTDAMLLQSDVHSVRSVRYVAIHVRRGDKVTLQEASRTEVEVYLQAAASILQNSTGSVDGPNSIGGLWVSSDDPSVLPEVKALASTYFANVQDDRVVSITFRAEGLAQDGNKDQLPTTSHRMASGLRGRGDSASLLNVNN 202
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BLAST of mRNA_Ecto-sp13_S_contig758.18780.1 vs. uniprot
Match: A0A6H5JIU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIU1_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.590e-45
Identity = 79/104 (75.96%), Postives = 93/104 (89.42%), Query Frame = 1 
Query:    1 MARLCVFESEEDLGKFLMTNYKETQRPKLPKQSPRAQLDDEIETAAALLGYVNSNMQPWFKEDTDSILLENDVVSVRSGRYVAIHVRRGDKL-IREASRTEVEV 309
            MARLCVF+S+EDLGKFLM NY+E+QR ++P++S R QL DE ETAAALLGYV SNMQPWFKEDT+ +LL++DV SVRS RYVAIHVRRGDKL ++EASRTEVEV
Sbjct:    1 MARLCVFDSDEDLGKFLMANYEESQRIEVPQRSSRTQLHDETETAAALLGYVYSNMQPWFKEDTERMLLQSDVDSVRSARYVAIHVRRGDKLTLKEASRTEVEV 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig758.18780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU71_ECTSI2.760e-9271.78GT23 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JIU1_9PHAE1.590e-4575.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig758contigEcto-sp13_S_contig758:12498..14736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score81.3
Seed ortholog evalue5.9e-13
Seed eggNOG ortholog2880.D7FJM3
Model size615
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGsKOG3705@1,KOG3705@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_000200.1
EC2.4.1.68
Cds size615
COG Functional cat.M
CAZyGT23
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig758.18780.1prot_Ecto-sp13_S_contig758.18780.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig758 12498..14736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464027.2871084-CDS-Ecto-sp13_S_contig758:12497..125451681464027.2871084-CDS-Ecto-sp13_S_contig758:12497..12545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig758 12498..12545 -
1681464027.2988887-CDS-Ecto-sp13_S_contig758:12728..129891681464027.2988887-CDS-Ecto-sp13_S_contig758:12728..12989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig758 12729..12989 -
1681464027.3088343-CDS-Ecto-sp13_S_contig758:13168..132441681464027.3088343-CDS-Ecto-sp13_S_contig758:13168..13244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig758 13169..13244 -
1681464027.3192954-CDS-Ecto-sp13_S_contig758:13382..134741681464027.3192954-CDS-Ecto-sp13_S_contig758:13382..13474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig758 13383..13474 -
1681464027.3295393-CDS-Ecto-sp13_S_contig758:14401..145061681464027.3295393-CDS-Ecto-sp13_S_contig758:14401..14506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig758 14402..14506 -
1681464027.3429313-CDS-Ecto-sp13_S_contig758:14703..147361681464027.3429313-CDS-Ecto-sp13_S_contig758:14703..14736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig758 14704..14736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig758.18780.1

>prot_Ecto-sp13_S_contig758.18780.1 ID=prot_Ecto-sp13_S_contig758.18780.1|Name=mRNA_Ecto-sp13_S_contig758.18780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
MARLCVFESEEDLGKFLMTNYKETQRPKLPKQSPRAQLDDEIETAAALLG
YVNSNMQPWFKEDTDSILLENDVVSVRSGRYVAIHVRRGDKLIREASRTE
VEVYLQAAASILRNSTEGVDGPNSIVGLWVASDDSSVLPEVKGLVSSYFP
NVQDERVVSISFRTSAPSPHGHADELPTTSHLMVCTKSRGDLASMVNVNN
RMLE*
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mRNA from alignment at Ecto-sp13_S_contig758:12498..14736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig758.18780.1 ID=mRNA_Ecto-sp13_S_contig758.18780.1|Name=mRNA_Ecto-sp13_S_contig758.18780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig758:12498..14736- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGCTTGTGCGTCTTTGAATCCGAAGAGGTGAGACGTACGGGCAG
CACACACGTAGACGTCGCAATCTGTCGATTACGTCGACCCTGAACTACGT
TGACGACACGTAAGAAAACGACCAATCGTCAAGCCCATCTGAACTCGCCC
TTCGCAGCAAGTGCTGCAAATATACTTGTCTGCCTCTGGCCCCAGTCCTC
GAATCTGCCCTCCATGTCCTGATCATGCAGGATCTCGGCAAGTTCTTGAT
GACCAACTACAAAGAGACCCAAAGACCCAAGCTCCCGAAACAATCCCCCA
GAGCACAGCTCGACGACGAGATTGAGACTGCTGCGGTGAGAGACCCGGCC
AGGACTTCCTTGTGTTGCCGGTTGGGATGCCCACGGCATGAATCGATCGT
GATGTAGAATGACTAGACTCGTATACGCCTGCAGCGACAAGCAATCGCGC
TCCTGGTGGTGCGCAGGTAGCTTGCTGCTTGATTCACACGAAGGCGTGGC
AAAGGCGTCAAACTCGTCACGAACCATGCCGGGTTCATGAACGTCTGCCA
AAACGGCAAAGAAATATGGAGGGATGTGTAGACTAGACAAGAGTTTCACC
GTTGAACCTCTGTGTTGGACGTAACGTAGCCAACGCGCCAAGTCGTCGGA
TCTTCACCATTTTGAGACGCTTGACGAAACGGCTTTGGCGGAAGTCGCTC
AATTATATCGCTGTAGCTTCATTCGCGTGACCTGATATTTACACTCACGC
TCAAACGGATCGATAAATTGTATCCTCTCCTCGTTGCGCTTGACAGTCTC
GAAAAGCCTAGTACCCGTGACGCCTCTACCGACCAGGTTGGACTGTTGCA
ACAAGCGTTGTTCTCTTGAGGTCAAAATCTTTAGCATTGCTTTAACACCA
TAGGCCTCCACGGGTATTTCCATCATCGCTTTCCACGGGGACAGGCGGTG
TGCTAAGTAGCCCCACGGTGTGCCGTGGATCGGTCCACGGATACCTTTGA
TCAACCTATAACCCTCTGAAAAACGTCCTAGGAACTACTATACCACGGTG
TTGTCCTCGGAGAAGCCGCGGAAACGCCATGGAATGGTCCCCAACGATTT
CTTCAGGATGGACAAGAAGATGTGTTTTGCCAAAGTCCACACGCCTGTGT
CGCGTTCGCATTCATTCTCGAAGATCTTGTTCCATCGATCCTGGGGTTCG
TTTAATGAATGCGCCTTGTTCAATTTGCTTGGGCCGTTTCGGTGCTTGAC
GCTCGGAAACAGGCGTTACTAGGCTACGTGAATTCGAACATGCAGCCTTG
GTTCAAGGAGGACACGGACTCGATTCTTCTAGAGAACGACGTGGTTTCCG
TCAGGTGCGGAAGTCCGTGACAACTTAACCACTCAACATCACCTGATCGG
GGTCGTTTGCAGTACTGTGCTCTCTCCTCGTGACTTGTGTGCGTCAAGAT
AATTGGATTCTCACGCCCGATGGTAATGTCGTGCTGCATCAGGTCCGGGA
GGTACGTAGCTATCCACGTTCGGCGGGGCGACAAGCTGATCAGGGAGGCG
TCGAGGACAGAGGTGGAGGTACGTCCACTGTATGTAGCGTTGTCGCGGTT
GAACGTCATCGTCAATGAACGAGACACCCGTATCGAAGGCCATCATGCCT
CACGCGAAACCCGTCTGTTATCGTACCTGGTCAAGCACTTGTCAACACCC
AAAATACTCCATACTGGACTGACGATCGCCATGTTTCCACCCGACAGGTT
TACCTTCAAGCTGCGGCGTCGATCCTTCGAAATTCGACCGAAGGTGTGGA
TGGCCCAAATTCCATCGTCGGCTTGTGGGTAGCATCCGACGACTCTAGCG
TCCTACCGGAAGTAAAGGGGCTGGTGTCCAGCTACTTTCCCAACGTTCAA
GACGAGCGTGTGGTTTCAATTTCATTCAGAACGTCAGCACCTTCTCCGCA
CGGGCACGCCGACGAATTGCCAACAACTTCGCATCTCATGGTGTGTACAA
AGTCTCGCGTTTGGTGTTGTTGTTGCGAGCCATTTTTGGCGTGAATTCCA
AGGTAGTATTGTTTGTCTGGCAAATACCACCGTTCACGGTTCACTCGCCG
TAACTCCAAACACAGAAGATGATTTTATATCTCGACGGCATAAGTTTCAA
TCGCGTACGATCTTCGAGGCAGGTGTGGCCTTCGGTAAAAGGGAGATTTG
GCCTCAATGGTGAACGTGAATAATCGCATGTTAGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig758:12498..14736-

>mRNA_Ecto-sp13_S_contig758.18780.1 ID=mRNA_Ecto-sp13_S_contig758.18780.1|Name=mRNA_Ecto-sp13_S_contig758.18780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig758:12498..14736- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGCTTGTGCGTCTTTGAATCCGAAGAGGATCTCGGCAAGTTCTT
GATGACCAACTACAAAGAGACCCAAAGACCCAAGCTCCCGAAACAATCCC
CCAGAGCACAGCTCGACGACGAGATTGAGACTGCTGCGGCGTTACTAGGC
TACGTGAATTCGAACATGCAGCCTTGGTTCAAGGAGGACACGGACTCGAT
TCTTCTAGAGAACGACGTGGTTTCCGTCAGGTCCGGGAGGTACGTAGCTA
TCCACGTTCGGCGGGGCGACAAGCTGATCAGGGAGGCGTCGAGGACAGAG
GTGGAGGTTTACCTTCAAGCTGCGGCGTCGATCCTTCGAAATTCGACCGA
AGGTGTGGATGGCCCAAATTCCATCGTCGGCTTGTGGGTAGCATCCGACG
ACTCTAGCGTCCTACCGGAAGTAAAGGGGCTGGTGTCCAGCTACTTTCCC
AACGTTCAAGACGAGCGTGTGGTTTCAATTTCATTCAGAACGTCAGCACC
TTCTCCGCACGGGCACGCCGACGAATTGCCAACAACTTCGCATCTCATGG
TGTGTACAAAGTCTCGCGGAGATTTGGCCTCAATGGTGAACGTGAATAAT
CGCATGTTAGAATGA
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