prot_Ecto-sp13_S_contig75796.18779.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig75796.18779.1
Unique Nameprot_Ecto-sp13_S_contig75796.18779.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length51
Homology
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.670e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL
Sbjct:   21 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 71          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.760e-20
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            G+DDRTVKIWDYQTK C+QTLEGH++NVS+V FH RLP+I+SA EDGT+RL
Sbjct:  209 GADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRL 259          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7S3PEI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.110e-20
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            G+DD  +KIWDYQTKTCVQTLEGHT NVSAV+FH +LPII+S  EDGT+R+
Sbjct:  124 GADDLKIKIWDYQTKTCVQTLEGHTGNVSAVMFHPKLPIILSGSEDGTVRV 174          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-19
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            G+DD  ++IWDYQTK+CVQ LEGH+NNVSAV FH RLP+IVSA EDGT+RL
Sbjct:  208 GADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRL 258          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7J9F2A7_9ROSI (Coatomer subunit beta' n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9F2A7_9ROSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-19
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            GSDD T K+WDYQTK+CVQTLEGHT+NVSAV FH  LPII++  EDGT+R+
Sbjct:  178 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPDLPIIITGSEDGTVRI 228          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7S1F1A2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F1A2_NOCSC)

HSP 1 Score: 87.4 bits (215), Expect = 7.400e-19
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            GSDD+TV IWDYQTK CVQTL GHTNNVS  LFH  LPII++ GEDGT+R+
Sbjct:  114 GSDDKTVCIWDYQTKQCVQTLTGHTNNVSVALFHPTLPIILTGGEDGTVRV 164          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: UPI0008F9C4D7 (coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C4D7)

HSP 1 Score: 86.7 bits (213), Expect = 1.380e-18
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            G+DDR VKIWDYQ KTCVQTLEGHT N+++V FH  LPII+S  EDGT+R+
Sbjct:  210 GADDRMVKIWDYQNKTCVQTLEGHTENIASVCFHPELPIILSGSEDGTVRI 260          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A293LKK5_ORNER (Vesicle coat complex COPI, beta' subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LKK5_ORNER)

HSP 1 Score: 84.3 bits (207), Expect = 4.740e-18
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            G+DDR VKIWDYQ KTCVQTLEGH  N++AV FH  LPII++  EDGT+R+
Sbjct:   78 GADDRLVKIWDYQNKTCVQTLEGHAQNITAVSFHPELPIIMTGSEDGTVRI 128          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A662WEK3_9STRA (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEK3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.800e-18
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            GSDDRTVK+WDYQTK  V TLEGH NN++AVL+H RLP+I+SA EDG +R+
Sbjct:   10 GSDDRTVKVWDYQTKAIVHTLEGHGNNLTAVLYHPRLPLIISACEDGAVRM 60          
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A067C2D6_SAPPC (Coatomer_WDAD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2D6_SAPPC)

HSP 1 Score: 84.3 bits (207), Expect = 8.950e-18
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 51
            GSDD+TVK+WDYQTKT V TL+GHT+N+S VL+H RLP+I+SA EDG +R+
Sbjct:   40 GSDDKTVKVWDYQTKTIVHTLDGHTHNLSDVLYHPRLPLIISACEDGAVRM 90          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI2.670e-27100.00Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A7S3HJI1_9STRA1.760e-2076.47Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3PEI6_9STRA2.110e-2074.51Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S1Y0J4_9STRA1.560e-1974.51Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7J9F2A7_9ROSI2.900e-1972.55Coatomer subunit beta' n=1 Tax=Gossypium trilobum ... [more]
A0A7S1F1A2_NOCSC7.400e-1974.51Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
UPI0008F9C4D71.380e-1870.59coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxI... [more]
A0A293LKK5_ORNER4.740e-1868.63Vesicle coat complex COPI, beta' subunit (Fragment... [more]
A0A662WEK3_9STRA4.800e-1870.59Coatomer_WDAD domain-containing protein (Fragment)... [more]
A0A067C2D6_SAPPC8.950e-1868.63Coatomer_WDAD domain-containing protein n=1 Tax=Sa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..51
e-value: 2.8E-21
score: 77.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 16..51
e-value: 3.2E-6
score: 27.8
coord: 1..11
e-value: 0.11
score: 13.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 21..51
score: 11.912
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..20
score: 11.01
NoneNo IPR availablePANTHERPTHR19876COATOMERcoord: 1..51
NoneNo IPR availablePANTHERPTHR19876:SF2COATOMER SUBUNIT BETA'coord: 1..51
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..51
score: 19.116
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75796contigEcto-sp13_S_contig75796:2..154 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75796.18779.1mRNA_Ecto-sp13_S_contig75796.18779.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig75796 2..154 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig75796.18779.1 ID=prot_Ecto-sp13_S_contig75796.18779.1|Name=mRNA_Ecto-sp13_S_contig75796.18779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIR
L
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf