mRNA_Ecto-sp13_S_contig75796.18779.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75796.18779.1
Unique NamemRNA_Ecto-sp13_S_contig75796.18779.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.670e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL
Sbjct:   21 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 71
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.760e-20
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            G+DDRTVKIWDYQTK C+QTLEGH++NVS+V FH RLP+I+SA EDGT+RL
Sbjct:  209 GADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRL 259
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7S3PEI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.110e-20
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            G+DD  +KIWDYQTKTCVQTLEGHT NVSAV+FH +LPII+S  EDGT+R+
Sbjct:  124 GADDLKIKIWDYQTKTCVQTLEGHTGNVSAVMFHPKLPIILSGSEDGTVRV 174
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-19
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            G+DD  ++IWDYQTK+CVQ LEGH+NNVSAV FH RLP+IVSA EDGT+RL
Sbjct:  208 GADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRL 258
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7J9F2A7_9ROSI (Coatomer subunit beta' n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9F2A7_9ROSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-19
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            GSDD T K+WDYQTK+CVQTLEGHT+NVSAV FH  LPII++  EDGT+R+
Sbjct:  178 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPDLPIIITGSEDGTVRI 228
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A7S1F1A2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F1A2_NOCSC)

HSP 1 Score: 87.4 bits (215), Expect = 7.400e-19
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            GSDD+TV IWDYQTK CVQTL GHTNNVS  LFH  LPII++ GEDGT+R+
Sbjct:  114 GSDDKTVCIWDYQTKQCVQTLTGHTNNVSVALFHPTLPIILTGGEDGTVRV 164
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: UPI0008F9C4D7 (coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C4D7)

HSP 1 Score: 86.7 bits (213), Expect = 1.380e-18
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            G+DDR VKIWDYQ KTCVQTLEGHT N+++V FH  LPII+S  EDGT+R+
Sbjct:  210 GADDRMVKIWDYQNKTCVQTLEGHTENIASVCFHPELPIILSGSEDGTVRI 260
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A293LKK5_ORNER (Vesicle coat complex COPI, beta' subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LKK5_ORNER)

HSP 1 Score: 84.3 bits (207), Expect = 4.740e-18
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            G+DDR VKIWDYQ KTCVQTLEGH  N++AV FH  LPII++  EDGT+R+
Sbjct:   78 GADDRLVKIWDYQNKTCVQTLEGHAQNITAVSFHPELPIIMTGSEDGTVRI 128
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A662WEK3_9STRA (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEK3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.800e-18
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            GSDDRTVK+WDYQTK  V TLEGH NN++AVL+H RLP+I+SA EDG +R+
Sbjct:   10 GSDDRTVKVWDYQTKAIVHTLEGHGNNLTAVLYHPRLPLIISACEDGAVRM 60
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BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Match: A0A067C2D6_SAPPC (Coatomer_WDAD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2D6_SAPPC)

HSP 1 Score: 84.3 bits (207), Expect = 8.950e-18
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRL 153
            GSDD+TVK+WDYQTKT V TL+GHT+N+S VL+H RLP+I+SA EDG +R+
Sbjct:   40 GSDDKTVKVWDYQTKTIVHTLDGHTHNLSDVLYHPRLPLIISACEDGAVRM 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75796.18779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI2.670e-27100.00Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A7S3HJI1_9STRA1.760e-2076.47Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3PEI6_9STRA2.110e-2074.51Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S1Y0J4_9STRA1.560e-1974.51Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7J9F2A7_9ROSI2.900e-1972.55Coatomer subunit beta' n=1 Tax=Gossypium trilobum ... [more]
A0A7S1F1A2_NOCSC7.400e-1974.51Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
UPI0008F9C4D71.380e-1870.59coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxI... [more]
A0A293LKK5_ORNER4.740e-1868.63Vesicle coat complex COPI, beta' subunit (Fragment... [more]
A0A662WEK3_9STRA4.800e-1870.59Coatomer_WDAD domain-containing protein (Fragment)... [more]
A0A067C2D6_SAPPC8.950e-1868.63Coatomer_WDAD domain-containing protein n=1 Tax=Sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75796contigEcto-sp13_S_contig75796:2..154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.2
Seed ortholog evalue3e-22
Seed eggNOG ortholog2880.D8LNJ0
Model size153
KEGG koko:K17302
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
Exons1
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
Cds size153
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464027.249171-CDS-Ecto-sp13_S_contig75796:1..1541681464027.249171-CDS-Ecto-sp13_S_contig75796:1..154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75796 2..154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75796.18779.1prot_Ecto-sp13_S_contig75796.18779.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75796 2..154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75796.18779.1

>prot_Ecto-sp13_S_contig75796.18779.1 ID=prot_Ecto-sp13_S_contig75796.18779.1|Name=mRNA_Ecto-sp13_S_contig75796.18779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
GSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIR
L
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mRNA from alignment at Ecto-sp13_S_contig75796:2..154-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75796.18779.1 ID=mRNA_Ecto-sp13_S_contig75796.18779.1|Name=mRNA_Ecto-sp13_S_contig75796.18779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75796:2..154- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCCGACGATCGCACGGTTAAGATATGGGACTACCAGACCAAGACGTG
CGTGCAGACCCTGGAGGGGCACACGAACAACGTCTCCGCCGTGCTCTTCC
ACAAGCGCCTCCCCATCATCGTCTCCGCGGGAGAGGATGGCACCATCCGC
CTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75796:2..154-

>mRNA_Ecto-sp13_S_contig75796.18779.1 ID=mRNA_Ecto-sp13_S_contig75796.18779.1|Name=mRNA_Ecto-sp13_S_contig75796.18779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75796:2..154- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCCGACGATCGCACGGTTAAGATATGGGACTACCAGACCAAGACGTG
CGTGCAGACCCTGGAGGGGCACACGAACAACGTCTCCGCCGTGCTCTTCC
ACAAGCGCCTCCCCATCATCGTCTCCGCGGGAGAGGATGGCACCATCCGC
CTT
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