mRNA_Ecto-sp13_S_contig7579.18778.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7579.18778.1
Unique NamemRNA_Ecto-sp13_S_contig7579.18778.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: A0A6H5JPJ5_9PHAE (MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPJ5_9PHAE)

HSP 1 Score: 1025 bits (2650), Expect = 0.000e+0
Identity = 740/803 (92.15%), Postives = 744/803 (92.65%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGGTKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAEIVFARTDLTPNSPEFEGHGFKNVIDIALAAVRGRITVSNPNEPATRRGRPPRKRIEVDGVAQPTSSKSRQPANASKPQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGPRKQPKRGRRRAGAGGDGAKRPSRSSSSAGSEESFADGQARAGWEPLTPDKRLRAAGSSPMGVMTGLSKRIHDVSFKDRGSASPSLHSFFPNTPGGTGMSQYSSLNDTHSPAALITAAAATDVTLPAWDTPKNKRRQPGGIGRFHGGSAXXXXXXXXXX-PAADTPDMSPLWGGRHNGASPALSAITAADISPYHVEDATLRTPGGGRRGXXXXXXXXXDTRDEFMDISSAARDLREFKASAGGNRAPSSAEAGRGRSGGVQTGRGKGSPRSRSSQSTTNRMFGPGGSNIGGSPAQDSPSYHMMAGCESDGCMSDNDQSFLPKRKLDQLAATPNSRSSGG-DVDGFFASGSSPEDGSGGVSGGYQVRDARAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAVRSSDGPKRTGGIGRDAGSPPAPATLSLMDFCRSSPATTLMS 2403
            VADSIPGKTDMQCFHRWTKVFNGGTKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAEIVFARTDLTP+SPEFEGHGFKNVIDIALAAVRGRITVSNPNEPATRRGRPPRKRIEVDGVAQP +SKSRQPANASKPQA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              XXXXXX       XXXXXXXXXXXXXXXXXXXX VRGPRK                  PSR    A SEESFADGQARAGWEPLTPDKRLRAAGSSPMGVMTGLSKRIHDVSFKDRGSASPSLHSFFPNTPGGTGMSQYSSLNDTHSPAALITAAAATDVTLPAWDTPKN R QPGGI  FHGG A  XXXXXXXX PAADTPD+SPLW GRHNGASPALSAITAADISPYHVEDATLRTPGGGRRGXXXXXXXXX TRDEFMDISSAARDLREFKASAGGNRAP SAEAGRGRSGGVQTGRGKGSPRSRSSQSTTNRMFGPGGSNIGGSPA+DSPSYHMMAGCESDGCMSDNDQSFLPKRKLDQLAATPNSRSSGG DVDGFFASGSSPEDGSGGVSGGYQVRDARAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAVRSSDGPKRTGGIGRDAGSPPAPATLSLMDFCRSSPATTLMS
Sbjct:  144 VADSIPGKTDMQCFHRWTKVFNGGTKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAEIVFARTDLTPSSPEFEGHGFKNVIDIALAAVRGRITVSNPNEPATRRGRPPRKRIEVDGVAQPATSKSRQPANASKPQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVGTIGEPGSASRXXXXXXQPRQADSXXXXXXXXXXXXXXXXXXXX-VRGPRKXXXXXXXXXXXXXXXXXHPSRXXXXAESEESFADGQARAGWEPLTPDKRLRAAGSSPMGVMTGLSKRIHDVSFKDRGSASPSLHSFFPNTPGGTGMSQYSSLNDTHSPAALITAAAATDVTLPAWDTPKNIRWQPGGIRGFHGGPASGXXXXXXXXXPAADTPDVSPLWDGRHNGASPALSAITAADISPYHVEDATLRTPGGGRRGXXXXXXXXXXTRDEFMDISSAARDLREFKASAGGNRAPLSAEAGRGRSGGVQTGRGKGSPRSRSSQSTTNRMFGPGGSNIGGSPAEDSPSYHMMAGCESDGCMSDNDQSFLPKRKLDQLAATPNSRSSGGGDVDGFFASGSSPEDGSGGVSGGYQVRDARAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAVRSSDGPKRTGGIGRDAGSPPAPATLSLMDFCRSSPATTLMS 945
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: A0A7S2WMH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMH6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 5.950e-54
Identity = 88/133 (66.17%), Postives = 102/133 (76.69%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGG-TKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAEIVFA 396
            +A++ P +T++QC HRW KV N    KGPW+ E+DA+V ELV   G KKW+ IA  LPGR GKQCRERWHNHLNP ISK+ WSE ED  IL  H+KLGN+WAEIAK +PGRTDNAIKNHWNSSMKRK E   A
Sbjct:   59 IAEAFPDRTEVQCLHRWQKVLNPELVKGPWTAEEDAKVIELVKLHGPKKWTMIADCLPGRIGKQCRERWHNHLNPKISKLAWSEDEDRVILEAHEKLGNRWAEIAKRLPGRTDNAIKNHWNSSMKRKIEKFLA 191
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: A0A1E7FEX6_9STRA (Ternary protein-Dna Complex1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEX6_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.450e-53
Identity = 84/129 (65.12%), Postives = 99/129 (76.74%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGG-TKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAE 384
            ++  +PG++++QC HRW KV      KGPW+ E+D +V ELV + GAKKWS IA  LPGR GKQCRERWHNHLNP ISK  W E ED TIL  H  LGN+WAEIAK++PGRTDNAIKNHWNSSM+RK E
Sbjct:   50 ISSRLPGRSEVQCLHRWQKVLKPSLVKGPWTAEEDRKVVELVKKHGAKKWSLIATNLPGRIGKQCRERWHNHLNPDISKEAWKEDEDRTILESHITLGNRWAEIAKMLPGRTDNAIKNHWNSSMRRKIE 178
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: A0A7S2UPF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPF5_9STRA)

HSP 1 Score: 193 bits (490), Expect = 5.960e-53
Identity = 101/201 (50.25%), Postives = 126/201 (62.69%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGG-TKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAEIVFARTDLTPNSP-EFEGHG---FKNVIDIALAAVRGRITVSNPNEPATRRGRPPRKRIEVDGVAQPTSSKS 588
            ++  +P +T++QC HRW KV      KGPW+ ++D +V ELV + GAKKWS IA+ LPGR GKQCRERWHNHLNP I K  W   ED TIL  H  LGN+WAEIAK++ GRTDNAIKNHWNSSMKRK E   AR      S   +   G   F   ++  LAAVRG+  +  P +P+ ++ + PR        A P SS S
Sbjct:   12 ISQRLPDRTEVQCLHRWQKVLKPTLVKGPWTADEDKKVMELVQKYGAKKWSLIASHLPGRIGKQCRERWHNHLNPDICKEAWQVEEDRTILDAHMNLGNRWAEIAKMLSGRTDNAIKNHWNSSMKRKIEKYLARRQGCDESQIRYMDDGRFDFMGDLEGVLAAVRGKDGMRRP-KPSGKKTKKPR----TVSTATPNSSLS 207
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: B8CFV0_THAPS (MYB DNA binding protein/ transcription factor-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFV0_THAPS)

HSP 1 Score: 187 bits (474), Expect = 1.220e-51
Identity = 82/129 (63.57%), Postives = 99/129 (76.74%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGG-TKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAE 384
            +A  +P +T++QC HRW KV      KGPW+PE+D  V  LV + GAKKWS IA+ LPGR GKQCRERWHNHLNP IS+  WS  ED TIL  H+ +GN+WAEI+K++PGRTDNAIKNHWNSSMK+K E
Sbjct:   24 IAKHLPQRTEVQCLHRWQKVLKPSLVKGPWTPEEDHLVLRLVQKYGAKKWSLIASHLPGRIGKQCRERWHNHLNPGISRGAWSFEEDRTILQFHENVGNRWAEISKLLPGRTDNAIKNHWNSSMKKKIE 152
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: C1EGX6_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EGX6_MICCC)

HSP 1 Score: 186 bits (473), Expect = 2.640e-51
Identity = 80/134 (59.70%), Postives = 99/134 (73.88%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGG-TKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAEIVFAR 399
            +A+    +TD+QC HRW KV N    KGPW+ E+D ++ ELVGQ+GAK+WS IA QLPGR GKQCRERW+NHLNP I +  WS  ED  ++I H + GN+WAEIAK   GRTDNAIKNHWNS++KRK +   AR
Sbjct:   37 IAEYFEERTDVQCLHRWQKVLNPELVKGPWTKEEDDKIIELVGQLGAKQWSKIAQQLPGRIGKQCRERWYNHLNPEIKREEWSREEDRKLIIAHHQFGNRWAEIAKTFVGRTDNAIKNHWNSTLKRKVDEALAR 170
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: A7RPT8_NEMVE (Predicted protein (Fragment) n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPT8_NEMVE)

HSP 1 Score: 185 bits (470), Expect = 4.030e-51
Identity = 82/127 (64.57%), Postives = 96/127 (75.59%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGGT-KGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRK 378
            VA   P +TD+QC  RW KV N    KGPW+ E+D +V ELV + G KKWS IA  L GR GKQCRERWHNHLNPHISK  W+E ED  I   H+K+GNKWAEIAK++PGRTDNAIKNHWNS+M+R+
Sbjct:   28 VASHFPDRTDVQCQQRWHKVLNPELIKGPWTKEEDEKVVELVNKYGPKKWSLIAQHLKGRIGKQCRERWHNHLNPHISKSSWTEEEDKLIYEAHKKMGNKWAEIAKLLPGRTDNAIKNHWNSTMRRR 154
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: A0A7S0CT81_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CT81_MICPS)

HSP 1 Score: 189 bits (481), Expect = 4.920e-51
Identity = 82/134 (61.19%), Postives = 100/134 (74.63%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGG-TKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAEIVFAR 399
            +A+    +TD+QC HRW KV N    KGPW+ E+DA++ ELVGQ+GAK+WS IA QLPGR GKQCRERW+NHLNP I +  WS  ED  ++I H+  GNKWAEIAK   GRTDNAIKNHWNS++KRK +   AR
Sbjct:   50 IAEYFEERTDVQCLHRWQKVLNPELVKGPWTKEEDAKIIELVGQLGAKQWSKIAQQLPGRIGKQCRERWYNHLNPDIKREEWSREEDRALIIAHRAFGNKWAEIAKTFVGRTDNAIKNHWNSTLKRKVDEALAR 183
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: A0A1S3M7Z6_SALSA (transcriptional activator Myb-like n=1 Tax=Salmo salar TaxID=8030 RepID=A0A1S3M7Z6_SALSA)

HSP 1 Score: 191 bits (484), Expect = 1.690e-50
Identity = 83/129 (64.34%), Postives = 98/129 (75.97%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGGT-KGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRKAE 384
            +A  +P +TDMQC HRW KV N    KGPW+ E+D RV ELV + GAK+WS IA  L GR GKQCRERWHNHLNP + K  W+E ED  I   H+KLGN+WAEIAK++PGRTDNAIKNHWNS+M+RK E
Sbjct:  105 IASFLPNRTDMQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGAKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDQIIYQAHEKLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVE 233
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BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Match: A0A059LM95_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LM95_9CHLO)

HSP 1 Score: 182 bits (462), Expect = 2.890e-50
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = 1 
Query:    1 VADSIPGKTDMQCFHRWTKVFNGGT-KGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRTGKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGRTDNAIKNHWNSSMKRK 378
            VA+ IPG+TD QC HRW KV N G  KGPW+PE+D  +  LVG+ GAKKWS IA +L GR GKQCRERWHNHLNP I +  W+  ED  I+  H++ GN+WA + + +PGRTDNA+KNHWNS++KRK
Sbjct:    9 VAEQIPGRTDTQCLHRWQKVLNPGVYKGPWTPEEDEAIVRLVGEHGAKKWSRIAQELNGRIGKQCRERWHNHLNPAIRRGAWTSDEDSVIVRFHKRFGNQWARLTRFVPGRTDNALKNHWNSTLKRK 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7579.18778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPJ5_9PHAE0.000e+092.15MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2WMH6_9STRA5.950e-5466.17Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1E7FEX6_9STRA3.450e-5365.12Ternary protein-Dna Complex1 (Fragment) n=1 Tax=Fr... [more]
A0A7S2UPF5_9STRA5.960e-5350.25Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8CFV0_THAPS1.220e-5163.57MYB DNA binding protein/ transcription factor-like... [more]
C1EGX6_MICCC2.640e-5159.70Uncharacterized protein (Fragment) n=1 Tax=Micromo... [more]
A7RPT8_NEMVE4.030e-5164.57Predicted protein (Fragment) n=3 Tax=Nematostella ... [more]
A0A7S0CT81_MICPS4.920e-5161.19Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A1S3M7Z6_SALSA1.690e-5064.34transcriptional activator Myb-like n=1 Tax=Salmo s... [more]
A0A059LM95_9CHLO2.890e-5060.63Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7579contigEcto-sp13_S_contig7579:2354..6705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1053.1
Seed ortholog evalue6.3e-305
Seed eggNOG ortholog2880.D8LAU7
Model size2406
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-27_006330.1
Cds size2376
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7579.18778.1prot_Ecto-sp13_S_contig7579.18778.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7579 2354..6675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464027.0763254-CDS-Ecto-sp13_S_contig7579:2353..24561681464027.0763254-CDS-Ecto-sp13_S_contig7579:2353..2456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7579 2354..2456 -
1681464027.090233-CDS-Ecto-sp13_S_contig7579:2709..31361681464027.090233-CDS-Ecto-sp13_S_contig7579:2709..3136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7579 2710..3136 -
1681464027.1316216-CDS-Ecto-sp13_S_contig7579:3562..36941681464027.1316216-CDS-Ecto-sp13_S_contig7579:3562..3694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7579 3563..3694 -
1681464027.15159-CDS-Ecto-sp13_S_contig7579:3923..44031681464027.15159-CDS-Ecto-sp13_S_contig7579:3923..4403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7579 3924..4403 -
1681464027.1677735-CDS-Ecto-sp13_S_contig7579:4691..48251681464027.1677735-CDS-Ecto-sp13_S_contig7579:4691..4825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7579 4692..4825 -
1681464027.182349-CDS-Ecto-sp13_S_contig7579:5063..56671681464027.182349-CDS-Ecto-sp13_S_contig7579:5063..5667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7579 5064..5667 -
1681464027.194163-CDS-Ecto-sp13_S_contig7579:5920..61911681464027.194163-CDS-Ecto-sp13_S_contig7579:5920..6191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7579 5921..6191 -
1681464027.20611-CDS-Ecto-sp13_S_contig7579:6450..66751681464027.20611-CDS-Ecto-sp13_S_contig7579:6450..6675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7579 6451..6675 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464027.2166119-UTR-Ecto-sp13_S_contig7579:6675..67051681464027.2166119-UTR-Ecto-sp13_S_contig7579:6675..6705Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7579 6676..6705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7579.18778.1

>prot_Ecto-sp13_S_contig7579.18778.1 ID=prot_Ecto-sp13_S_contig7579.18778.1|Name=mRNA_Ecto-sp13_S_contig7579.18778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=792bp
MQCFHRWTKVFNGGTKGPWSPEDDARVAELVGQIGAKKWSCIAAQLPGRT
GKQCRERWHNHLNPHISKVPWSEHEDHTILIQHQKLGNKWAEIAKVMPGR
TDNAIKNHWNSSMKRKAEIVFARTDLTPNSPEFEGHGFKNVIDIALAAVR
GRITVSNPNEPATRRGRPPRKRIEVDGVAQPTSSKSRQPANASKPQAAAT
ATATATASASPSSSTAASSARAQAAAAATAAAVAPAASAAVPPSASRTGG
AGRGRPAIGTTGEPDSASRSRRRGQQPEQADSSEDEMGDNAQASAGKGRG
KGVRGPRKQPKRGRRRAGAGGDGAKRPSRSSSSAGSEESFADGQARAGWE
PLTPDKRLRAAGSSPMGVMTGLSKRIHDVSFKDRGSASPSLHSFFPNTPG
GTGMSQYSSLNDTHSPAALITAAAATDVTLPAWDTPKNKRRQPGGIGRFH
GGSASGGGSGGGGGPAADTPDMSPLWGGRHNGASPALSAITAADISPYHV
EDATLRTPGGGRRGGNDGGNDADDTRDEFMDISSAARDLREFKASAGGNR
APSSAEAGRGRSGGVQTGRGKGSPRSRSSQSTTNRMFGPGGSNIGGSPAQ
DSPSYHMMAGCESDGCMSDNDQSFLPKRKLDQLAATPNSRSSGGDVDGFF
ASGSSPEDGSGGVSGGYQVRDARAGGGAAVTPVVKRRAILYDRSPAENNN
GGKSSGGTNAAATGASGAGSDAGAAATSAATVASNDSEAAAAAASALLAV
RSSDGPKRTGGIGRDAGSPPAPATLSLMDFCRSSPATTLMS*
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mRNA from alignment at Ecto-sp13_S_contig7579:2354..6705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7579.18778.1 ID=mRNA_Ecto-sp13_S_contig7579.18778.1|Name=mRNA_Ecto-sp13_S_contig7579.18778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4352bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7579:2354..6705- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCCGATAGTATCCCCGGAAAGACGGACATGCAGTGCTTCCACCGCTG
GACCAAGGTCTTCAACGGCGGCACTAAGGGGCCCTGGTCCCCCGAAGACG
ATGCGCGCGTGGCGGAGCTCGTGGGTCAGATCGGCGCAAAGAAGTGGAGC
TGCATCGCCGCCCAGCTCCCCGGCCGCACCGGCAAGCAGTGCCGCGAGCG
TTGGCACAACCACCTGAACCCGCACATCAGCAAAGTTCCTTGGAGCGAGC
ACGAGGTATGTAGCGGGGTTGGTTGCTTGTTGTGGCGCTAGTACCGTTCA
TCGTTTCTATTTTCTCCTGTGACGTGCGAAACAACGTGTGTTTAGTGTAT
TGATGTCTGAGCAACGGTGGTCGCGGTCAATGTGTTCCGAAGATATTTCT
GCGGTTTTATCCCTCCCTCGCTCTTAACGTTGGTTGATGACGCGTTGCTA
CAAGTCCCTCGCATTGTTGGCCATGACAAACCGAGAGTACGTGCAAAAAC
CGTTCTATTTGCAGGACCACACAATCCTGATCCAGCACCAGAAGCTCGGC
AACAAGTGGGCGGAGATCGCGAAGGTGATGCCCGGGCGAACGGACAACGC
CATCAAGAACCACTGGAACTCCTCCATGAAGCGGAAGGCGGAGATCGTGT
TCGCCCGCACCGATCTCACCCCGAACAGCCCAGAATTCGAGGGACACGGG
TTCAAGAACGTCATCGACATCGCCTTGGCCGCTGTGAGGGGCAGGATTAC
CGTGAGCAACCCGAACGAGCCTGCAACACGCCGAGGTAAGCCCCCCCCGT
CTCCCCCGTCCCATCCGCCTGTCCCCGAATAGAGCTGTCAACCTGGAGGT
CGTGCTTTTTCGCTCCTGACCGTTGCTCTTTATGTATGCTTCAATGAAGT
GCAGTCGTGTGGTCTGCTGGTCTTGATGGGTTACTGCGGTTTTCGGCGTT
CTTCACTAGCCTAACCCTAAGTTAGGATCCTCTCCTTTGCGGCGACCCTG
ACTCACCGAACCTCTAATTTCCCCACGCCATTGGCCAGGACGCCCTCCGC
GCAAGCGTATCGAAGTCGATGGGGTAGCACAGCCTACCTCCTCCAAATCC
CGGCAGCCGGCCAACGCTTCCAAACCGCAAGCGGCGGCCACCGCCACCGC
CACCGCCACCGCCAGTGCTTCGCCTTCCTCGTCTACCGCAGCGAGCTCTG
CCCGAGCACAGGCTGCTGCCGCCGCCACCGCCGCCGCGGTGGCGCCAGCA
GCGAGCGCTGCCGTACCTCCGTCGGCAAGCCGTACCGGCGGTGCAGGCCG
CGGGCGCCCTGCTATCGGCACCACCGGCGAACCCGACTCTGCGAGTCGGA
GCCGCCGTCGGGGACAGCAGCCGGAGCAAGCCGACAGCAGCGAGGACGAA
ATGGGCGACAACGCGCAGGCGTCAGCGGGGAAGGGGCGCGGGAAGGGGGT
ACGAGGCCCCAGGAAGCAGCCGAAGCGAGGCCGCCGGCGTGCTGGTGCGG
GCGGCGACGGGGCCAAGCGTCCCAGTCGAAGCAGTTCGAGCGCTGGGTCA
GAGGAGTCGTTCGCTGATGGGCAGGCGCGGGCGGGTTGGGAGCCGCTGAC
CCCGGACAAGAGATTGCGCGCCGCTGGATCTTCTCCGATGGGGTAAGTTT
TCATGTGGTTTCTCGCCGGCCATACGTTGATGGCTCTGTTGTAGTTTTGT
CTGTGGAACCTCCCGACTGTTTTATCTTCAGTCTCTGGTCAGGTCTGGCG
TTTCGTGATTGGCCGGCACGTTGTTGAAGTTGCTGCGCTTGTGGTTGCAC
TGCCAGCTGTGGTTGGTATTGACACTTGTGCCTGACCCTTGCTCTTGCAA
CCAACCACACCCGCGCCCCGCCTCTCGCAGGGTCATGACTGGCTTGAGCA
AGCGTATCCACGACGTGAGCTTCAAAGACCGAGGGAGTGCCTCGCCCAGC
CTCCATAGCTTCTTCCCCAACACTCCTGGAGGCACGGGCATGTCTCAGTA
CTCCTCGTTGAACGGTAAGCTAAGATGTTGTTCGGGGGATCCTCTTATGT
TGTTAAATTTTGCTTGTATAGTGTGATGTTTCTCTTATGGGATTCGGCGT
TTCATGTTCCAAAACGTTCCTGCCTCAACTCGAGGTGTGATGCGGATACG
GTGGTTGCAGTCTTGCTCCGCTAACGTATTTCTGGAACCGCTGGCAAGCT
CGTCCACGTTCACTCTCCGTGCTTGGATCCTGCCCCAGACATTTTTCACT
TCCGGAAGTAGCTCACCCACGGCCGACACATTTTTTTTCGTTCTCCCATC
AGATACGCACTCTCCTGCGGCGTTGATCACCGCCGCCGCCGCAACAGACG
TCACGTTGCCCGCATGGGACACTCCGAAGAACAAACGTCGGCAGCCCGGC
GGCATTGGCCGGTTCCACGGGGGCTCGGCTAGCGGCGGCGGCAGCGGCGG
CGGCGGGGGCCCCGCGGCCGACACACCCGACATGTCCCCCCTCTGGGGCG
GGCGACACAACGGAGCGTCCCCCGCTCTGTCGGCCATCACTGCGGCCGAT
ATCTCGCCGTACCATGTCGAAGACGCGACGTTGCGTACGCCCGGCGGAGG
GAGAAGAGGGGGCAATGACGGGGGCAACGATGCAGACGACACTCGAGACG
AGTTCATGGACATAAGCTCCGCCGCGCGCGACCTGAGGGAGTTCAAGGCC
AGCGCAGGTGGTAACCGTGCGCCTTCGTCGGCGGAGGCCGGTCGCGGGCG
GTCTGGAGGCGTTCAGACCGGCAGGGGTAAGGGTGAGTTTGCTGCTTGCA
GATCGTACGTGTTGCGATAGCATGGCGTGAAAAGAGATGGGTAACTATCG
AAGCGGCGCGACGAAATTGGGTCTGTGTCTTGATTGTACCTTGAGCGCGT
GAGACCCGACGGCAGCTTCATTCACCATACACGCAGTGCGACTGGTAGTA
GTCGAGTTTTTGTCCCTCTAACCCTAAGCTGCCTTTCGTTTTTGGCGTTG
ATCGTCTCCAGGTTCGCCTCGGAGCCGCTCGAGCCAGTCAACCACGAACC
GCATGTTCGGACCGGGTGGGTCTAATATCGGCGGCAGCCCCGCCCAGGAT
TCACCGTCGTACCACATGATGGCTGGCTGCGAGAGCGATGGTTGTGAGTG
TTGTTGAATACTACTGGGACGTTCGGACTGTTCTGTTGGTGGTTGTGGTG
TGGCTCTCCTCTGTTGCAGCGTCTGTGGTTGTGGTGATCATTGCCCGTTG
CACTGTACGGCAGGAGTTTTGGAGGACACAAGTGCCGTTCCGTTCCGACA
TACGCGGCCGCACGGGAGGTGACACGGCCTCGCATAGAAGGGATATACGT
CTGGTAGCCCATCTCTTGTAGCTTCTCTTTGCAAATGATGAGCCGTTGCA
TGAGTCGAGGTGCCGTGTGAGACGTACATCCAAAAGCAGCCCCCTACCCC
TGATCTGTGTCCGTTTGTGTTGGGTCTCTTTTCTTACCCCTTGCGTGTTT
GGTTGCGTATTTTCTTCAAGAGGTGTGCGCAACAACTCTTTGACTCCGCC
CTTTCCCTCCGTTACGTAGGTATGAGCGACAACGACCAATCCTTCCTGCC
GAAGCGCAAGCTGGATCAGCTGGCCGCCACCCCCAACTCCCGCAGCAGCG
GCGGCGACGTCGACGGGTTCTTCGCCTCCGGCTCGAGTCCGGAAGACGGC
TCCGGCGGTGTCAGCGGTGGCTACCAAGTCCGAGACGCCCGGGCGGGCGG
CGGAGCGGCTGTGACCCCGGTCGTCAAGCGCCGCGCCATCCTGTACGACA
GGAGCCCCGCCGAGAACAACAACGGCGGCAAGTCTAGTGGCGGAACCAAC
GCCGCGGCGACCGGCGCCTCTGGCGCGGGCTCTGACGCCGGCGCGGCCGC
CACTTCAGCCGCCACCGTGGCTTCCAACGATTCGGAGGCTGCGGCCGCGG
CGGCCTCGGCGCTGCTCGCGGTGCGATCTTCCGATGGCCCGAAGAGGTGC
GTGGCTCTGCTTGCTTGCAAAAATCTTGTTCCGTTTCATCATGAGGGTTT
GGCGTTCATGTTTGACGGGGTTTTCGAGCGATGGAGCCAAGCCGTGAAAT
TTTCTGTGGCACCGATGAAAATGACCGTTGCTGCGATTCGTTCACACCCC
ACGCCCGCGAGCCTGTTTAGCTCCTCCGTGGATCTCACATGCCTCGTCGA
TTTCAACCTTTGCCGACATCGCTGTTTTGTTTTTGTTTTCTTGCGATAGG
ACCGGGGGCATCGGACGCGACGCTGGCTCACCCCCGGCGCCGGCGACGCT
GTCACTCATGGACTTCTGCCGGTCCAGCCCCGCAACGACTCTCATGTCGT
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7579:2354..6705-

>mRNA_Ecto-sp13_S_contig7579.18778.1 ID=mRNA_Ecto-sp13_S_contig7579.18778.1|Name=mRNA_Ecto-sp13_S_contig7579.18778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7579:2354..6705- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTGCTTCCACCGCTGGACCAAGGTCTTCAACGGCGGCACTAAGGG
GCCCTGGTCCCCCGAAGACGATGCGCGCGTGGCGGAGCTCGTGGGTCAGA
TCGGCGCAAAGAAGTGGAGCTGCATCGCCGCCCAGCTCCCCGGCCGCACC
GGCAAGCAGTGCCGCGAGCGTTGGCACAACCACCTGAACCCGCACATCAG
CAAAGTTCCTTGGAGCGAGCACGAGGACCACACAATCCTGATCCAGCACC
AGAAGCTCGGCAACAAGTGGGCGGAGATCGCGAAGGTGATGCCCGGGCGA
ACGGACAACGCCATCAAGAACCACTGGAACTCCTCCATGAAGCGGAAGGC
GGAGATCGTGTTCGCCCGCACCGATCTCACCCCGAACAGCCCAGAATTCG
AGGGACACGGGTTCAAGAACGTCATCGACATCGCCTTGGCCGCTGTGAGG
GGCAGGATTACCGTGAGCAACCCGAACGAGCCTGCAACACGCCGAGGACG
CCCTCCGCGCAAGCGTATCGAAGTCGATGGGGTAGCACAGCCTACCTCCT
CCAAATCCCGGCAGCCGGCCAACGCTTCCAAACCGCAAGCGGCGGCCACC
GCCACCGCCACCGCCACCGCCAGTGCTTCGCCTTCCTCGTCTACCGCAGC
GAGCTCTGCCCGAGCACAGGCTGCTGCCGCCGCCACCGCCGCCGCGGTGG
CGCCAGCAGCGAGCGCTGCCGTACCTCCGTCGGCAAGCCGTACCGGCGGT
GCAGGCCGCGGGCGCCCTGCTATCGGCACCACCGGCGAACCCGACTCTGC
GAGTCGGAGCCGCCGTCGGGGACAGCAGCCGGAGCAAGCCGACAGCAGCG
AGGACGAAATGGGCGACAACGCGCAGGCGTCAGCGGGGAAGGGGCGCGGG
AAGGGGGTACGAGGCCCCAGGAAGCAGCCGAAGCGAGGCCGCCGGCGTGC
TGGTGCGGGCGGCGACGGGGCCAAGCGTCCCAGTCGAAGCAGTTCGAGCG
CTGGGTCAGAGGAGTCGTTCGCTGATGGGCAGGCGCGGGCGGGTTGGGAG
CCGCTGACCCCGGACAAGAGATTGCGCGCCGCTGGATCTTCTCCGATGGG
GGTCATGACTGGCTTGAGCAAGCGTATCCACGACGTGAGCTTCAAAGACC
GAGGGAGTGCCTCGCCCAGCCTCCATAGCTTCTTCCCCAACACTCCTGGA
GGCACGGGCATGTCTCAGTACTCCTCGTTGAACGATACGCACTCTCCTGC
GGCGTTGATCACCGCCGCCGCCGCAACAGACGTCACGTTGCCCGCATGGG
ACACTCCGAAGAACAAACGTCGGCAGCCCGGCGGCATTGGCCGGTTCCAC
GGGGGCTCGGCTAGCGGCGGCGGCAGCGGCGGCGGCGGGGGCCCCGCGGC
CGACACACCCGACATGTCCCCCCTCTGGGGCGGGCGACACAACGGAGCGT
CCCCCGCTCTGTCGGCCATCACTGCGGCCGATATCTCGCCGTACCATGTC
GAAGACGCGACGTTGCGTACGCCCGGCGGAGGGAGAAGAGGGGGCAATGA
CGGGGGCAACGATGCAGACGACACTCGAGACGAGTTCATGGACATAAGCT
CCGCCGCGCGCGACCTGAGGGAGTTCAAGGCCAGCGCAGGTGGTAACCGT
GCGCCTTCGTCGGCGGAGGCCGGTCGCGGGCGGTCTGGAGGCGTTCAGAC
CGGCAGGGGTAAGGGTTCGCCTCGGAGCCGCTCGAGCCAGTCAACCACGA
ACCGCATGTTCGGACCGGGTGGGTCTAATATCGGCGGCAGCCCCGCCCAG
GATTCACCGTCGTACCACATGATGGCTGGCTGCGAGAGCGATGGTTGTAT
GAGCGACAACGACCAATCCTTCCTGCCGAAGCGCAAGCTGGATCAGCTGG
CCGCCACCCCCAACTCCCGCAGCAGCGGCGGCGACGTCGACGGGTTCTTC
GCCTCCGGCTCGAGTCCGGAAGACGGCTCCGGCGGTGTCAGCGGTGGCTA
CCAAGTCCGAGACGCCCGGGCGGGCGGCGGAGCGGCTGTGACCCCGGTCG
TCAAGCGCCGCGCCATCCTGTACGACAGGAGCCCCGCCGAGAACAACAAC
GGCGGCAAGTCTAGTGGCGGAACCAACGCCGCGGCGACCGGCGCCTCTGG
CGCGGGCTCTGACGCCGGCGCGGCCGCCACTTCAGCCGCCACCGTGGCTT
CCAACGATTCGGAGGCTGCGGCCGCGGCGGCCTCGGCGCTGCTCGCGGTG
CGATCTTCCGATGGCCCGAAGAGGACCGGGGGCATCGGACGCGACGCTGG
CTCACCCCCGGCGCCGGCGACGCTGTCACTCATGGACTTCTGCCGGTCCA
GCCCCGCAACGACTCTCATGTCGTAG
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