mRNA_Ecto-sp13_S_contig75753.18775.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75753.18775.1
Unique NamemRNA_Ecto-sp13_S_contig75753.18775.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: D7FU75_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU75_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 9.450e-28
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 MSSPGDDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQLEESLLK 168
            MSS GDDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQLEESLLK
Sbjct:    1 MSSRGDDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQLEESLLK 56
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: A0A0M0K2R5_9EUKA (Nuclear migration protein nudc-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K2R5_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 3.490e-15
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 MSSPGDDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGA-SEAQLEESLLK 168
            M++P DD+RFDGM+L LAQQ  GID LL+SFFGF+RRKTDF+TGA SE   EE+++K
Sbjct:    1 MTAPMDDERFDGMFLQLAQQLGGIDPLLDSFFGFMRRKTDFFTGAVSEGAAEETVVK 57
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: A0A7S3AZ48_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ48_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.610e-14
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   16 DDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQ 147
            DDDR+DGMY+NLAQQ  GIDNLL+SFFGFLRRKTDF +GA+ A+
Sbjct:    2 DDDRYDGMYINLAQQVGGIDNLLDSFFGFLRRKTDFLSGAASAE 45
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: A0A7S0L513_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L513_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 1.600e-13
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   16 DDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQL-EESLLK 168
            DD+RFDGMYL LAQQ  GID LL+SFFGFLRRKTDF++GA  A   +E+LLK
Sbjct:    4 DDERFDGMYLQLAQQVGGIDPLLDSFFGFLRRKTDFFSGAVSADAAQETLLK 55
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: A0A1Q9DUY0_SYMMI (Nuclear migration protein nudC n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DUY0_SYMMI)

HSP 1 Score: 67.0 bits (162), Expect = 2.590e-13
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   13 GDDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQL-EESLLK 168
            G D+RFDG+ LN+AQQ   ID++L+SFFGFL+RKTDF+TG  + Q  EE +LK
Sbjct:    4 GSDERFDGVLLNIAQQAGSIDSILDSFFGFLQRKTDFFTGGQDEQAAEEKVLK 56
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: R1G7C1_EMIHU (CS domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G7C1_EMIHU)

HSP 1 Score: 70.1 bits (170), Expect = 5.790e-13
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   16 DDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQLEES 159
            DD+RFDGMY+N+A Q  GID LL+ FFGFLRRKTDF+TGA+ A   E+
Sbjct:    2 DDERFDGMYMNMAGQLGGIDPLLDGFFGFLRRKTDFFTGAASADAAEA 49
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: A0A7S0HR82_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HR82_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 8.500e-13
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 MSSPGDDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGAS-EAQLEESLLK 168
            M++P DD+RFD MY+N+AQQ  GI+ LL+SFFGFLRRKTDF  GA+ E+  +E++ K
Sbjct:    1 MTTPMDDERFDSMYINIAQQIGGIEPLLDSFFGFLRRKTDFLNGAATESMAQETVTK 57
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: A0A4D9D8G9_9STRA (CS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8G9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.030e-12
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 DDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQLEESLL 165
            +D RFD + LN+AQQ QGID LLE F  FLRRKTDFYTGA+ +++EE++L
Sbjct:    4 EDGRFDPLLLNIAQQCQGIDGLLEVFLSFLRRKTDFYTGATASKVEETIL 53
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: A0A835Z5V7_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.940e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   22 DRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQLEESLL 165
            +RFDG++L LAQQ QGID +LES F FLRRKTDF+TGAS  ++E+++L
Sbjct:    5 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVL 52
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BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Match: A0A7S0P324_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P324_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 5.660e-12
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   16 DDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQL-EESLLK 168
            DD+RFDGMY+ LA Q  G+D LL+SFFGFLRRKTDF+T A+  +  +ES+LK
Sbjct:    2 DDERFDGMYMQLASQMGGLDPLLDSFFGFLRRKTDFFTNAATPEAAQESVLK 53
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75753.18775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU75_ECTSI9.450e-2898.21CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A0M0K2R5_9EUKA3.490e-1566.67Nuclear migration protein nudc-like protein n=1 Ta... [more]
A0A7S3AZ48_9EUKA1.610e-1477.27Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0L513_9EUKA1.600e-1371.15Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A1Q9DUY0_SYMMI2.590e-1360.38Nuclear migration protein nudC n=1 Tax=Symbiodiniu... [more]
R1G7C1_EMIHU5.790e-1366.67CS domain-containing protein n=1 Tax=Emiliania hux... [more]
A0A7S0HR82_9EUKA8.500e-1359.65Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A4D9D8G9_9STRA3.030e-1264.00CS domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A835Z5V7_9STRA3.940e-1264.58HSP20-like chaperone n=1 Tax=Tribonema minus TaxID... [more]
A0A7S0P324_9EUKA5.660e-1263.46Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75753contigEcto-sp13_S_contig75753:2..169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score111.3
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7FU75
Preferred namenudc
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0005856,GO:0006457,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007097,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0016043,GO:0022402,GO:0030473,GO:0030705,GO:0031505,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046907,GO:0048285,GO:0051082,GO:0051179,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0072384,GO:0098813,GO:0099111,GO:0140014,GO:1903047
Exons1
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
Cds size168
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.7807736-CDS-Ecto-sp13_S_contig75753:1..1691681464026.7807736-CDS-Ecto-sp13_S_contig75753:1..169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75753 2..169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75753.18775.1prot_Ecto-sp13_S_contig75753.18775.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75753 2..169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75753.18775.1

>prot_Ecto-sp13_S_contig75753.18775.1 ID=prot_Ecto-sp13_S_contig75753.18775.1|Name=mRNA_Ecto-sp13_S_contig75753.18775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MSSPGDDDRFDGMYLNLAQQNQGIDNLLESFFGFLRRKTDFYTGASEAQL
EESLLK
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mRNA from alignment at Ecto-sp13_S_contig75753:2..169-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75753.18775.1 ID=mRNA_Ecto-sp13_S_contig75753.18775.1|Name=mRNA_Ecto-sp13_S_contig75753.18775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75753:2..169- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCGCCAGGTGATGATGACCGCTTCGACGGCATGTACCTCAACCT
CGCCCAGCAGAACCAAGGGATCGACAACCTCCTCGAGTCGTTCTTCGGGT
TCCTTCGCAGGAAGACCGACTTCTACACCGGCGCCAGCGAGGCGCAGCTG
GAGGAGAGCCTGCTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75753:2..169-

>mRNA_Ecto-sp13_S_contig75753.18775.1 ID=mRNA_Ecto-sp13_S_contig75753.18775.1|Name=mRNA_Ecto-sp13_S_contig75753.18775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75753:2..169- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCGCCAGGTGATGATGACCGCTTCGACGGCATGTACCTCAACCT
CGCCCAGCAGAACCAAGGGATCGACAACCTCCTCGAGTCGTTCTTCGGGT
TCCTTCGCAGGAAGACCGACTTCTACACCGGCGCCAGCGAGGCGCAGCTG
GAGGAGAGCCTGCTGAAG
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