mRNA_Ecto-sp13_S_contig75715.18772.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75715.18772.1
Unique NamemRNA_Ecto-sp13_S_contig75715.18772.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75715.18772.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.090e-12
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 MVKVLWEEAKKEERGATLIGSRVRIWWDGDMV 96
            MVKVLWEEAKKEERGA LIGSRVRIWWDGDMV
Sbjct:    1 MVKVLWEEAKKEERGAALIGSRVRIWWDGDMV 32
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BLAST of mRNA_Ecto-sp13_S_contig75715.18772.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.820e-11
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 MVKVLWEEAKKEERGATLIGSRVRIWWDGDMV 96
            MV+VLWEEAK+EERGA LIGSR+RIWWDGDMV
Sbjct:    1 MVEVLWEEAKEEERGAALIGSRIRIWWDGDMV 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75715.18772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTV3_9PHAE1.090e-1296.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCY6_ECTSI1.820e-1187.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75715contigEcto-sp13_S_contig75715:452..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score65.1
Seed ortholog evalue8.8e-09
Seed eggNOG ortholog2880.D8LCY6
Model size123
KEGG koko:K08737,ko:K11267,ko:K11654
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.mitotic sister chromatid cohesion
EggNOG OGsCOG0553@1,KOG0385@2759,KOG1525@1,KOG1525@2759
Cds size123
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.5835083-CDS-Ecto-sp13_S_contig75715:451..5741681464026.5835083-CDS-Ecto-sp13_S_contig75715:451..574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75715 452..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75715.18772.1prot_Ecto-sp13_S_contig75715.18772.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75715 452..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75715.18772.1

>prot_Ecto-sp13_S_contig75715.18772.1 ID=prot_Ecto-sp13_S_contig75715.18772.1|Name=mRNA_Ecto-sp13_S_contig75715.18772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
MVKVLWEEAKKEERGATLIGSRVRIWWDGDMVWYEGTVVG*
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mRNA from alignment at Ecto-sp13_S_contig75715:452..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75715.18772.1 ID=mRNA_Ecto-sp13_S_contig75715.18772.1|Name=mRNA_Ecto-sp13_S_contig75715.18772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75715:452..574+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAAAGTTCTGTGGGAGGAGGCGAAGAAGGAGGAGCGCGGAGCAAC
TCTCATTGGCAGCCGAGTCCGCATCTGGTGGGATGGAGACATGGTGTGGT
ACGAAGGAACGGTCGTAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75715:452..574+

>mRNA_Ecto-sp13_S_contig75715.18772.1 ID=mRNA_Ecto-sp13_S_contig75715.18772.1|Name=mRNA_Ecto-sp13_S_contig75715.18772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75715:452..574+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAAAGTTCTGTGGGAGGAGGCGAAGAAGGAGGAGCGCGGAGCAAC
TCTCATTGGCAGCCGAGTCCGCATCTGGTGGGATGGAGACATGGTGTGGT
ACGAAGGAACGGTCGTAGGGTGA
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