mRNA_Ecto-sp13_S_contig7567.18767.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7567.18767.1
Unique NamemRNA_Ecto-sp13_S_contig7567.18767.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: A0A6H5KB43_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB43_9PHAE)

HSP 1 Score: 502 bits (1292), Expect = 2.970e-175
Identity = 283/286 (98.95%), Postives = 284/286 (99.30%), Query Frame = 1
Query:    1 KVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEELEEGXXXXXXXXXXSADRLAFDIGGAREGLGDDSDSTNALLQLSEHGGADDEDGEGACRVLI 858
            +VFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEELEEGXXXXXXXXX SADRLAFDIGGAREGLGDDSDSTNALLQLSEHG ADDEDGEGACRVLI
Sbjct:   17 EVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEELEEGXXXXXXXXXGSADRLAFDIGGAREGLGDDSDSTNALLQLSEHGDADDEDGEGACRVLI 302          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: D7G3V2_ECTSI (Hexose transporter pGlT n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V2_ECTSI)

HSP 1 Score: 499 bits (1285), Expect = 1.970e-170
Identity = 281/286 (98.25%), Postives = 285/286 (99.65%), Query Frame = 1
Query:    1 KVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEELEEGXXXXXXXXXXSADRLAFDIGGAREGLGDDSDSTNALLQLSEHGGADDEDGEGACRVLI 858
            +VFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSG LVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYA+FCVLSVLAVAFIYFFVRETMGKSLEELEEGXXXXXXXXXXSADRLAFD+GGAREGLGDDS+STNALLQLSEHGGADDEDGEGACRVLI
Sbjct:  264 EVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGILVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYAVFCVLSVLAVAFIYFFVRETMGKSLEELEEGXXXXXXXXXXSADRLAFDVGGAREGLGDDSESTNALLQLSEHGGADDEDGEGACRVLI 549          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: A0A4D9CZ46_9STRA (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ46_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.280e-45
Identity = 102/217 (47.00%), Postives = 145/217 (66.82%), Query Frame = 1
Query:    1 KVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRET 651
            + F+Y + + IG+L+M   A TGINTV+FYSTTIF LAGV+N  L TV VG+  V++T VSG LVDKAGR+ L+  GT +M ++L +L   LL     P A   +AV + LL++ GF++G G+V W+++ E+VP++IR++A+SIF   NW +NL I L TLS IDA+G+ L       S+  S   Q+++GVA LY  F  + VL + F+YF V ET
Sbjct:  261 ETFSYGKAMRIGMLMMFFSAMTGINTVIFYSTTIFALAGVENAFLGTVLVGILNVIITMVSGYLVDKAGRKVLLTGGTWIMLVSLLLLGSILLADGVPPVAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSKAYSIFVTSNWTANLVISLVTLSLIDALGKSLA------SAGSSVEKQEQLGVALLYMCFAGMCVLCLLFLYFLVPET 471          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: A0A1V9ZZU5_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZU5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.880e-38
Identity = 96/224 (42.86%), Postives = 136/224 (60.71%), Query Frame = 1
Query:    7 FAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEELE 678
            + Y+RP++IG LL+  QA TGINTV+ YS+ IF  AGVD  ++AT SVG   V+ T +S  LVD  GR+ L+L+ T  MA +L +LS SLL+L+   + QG LAV   L+F++GF++G G+V W++L EI PS IR +A  +F AI++  N+F+   TL  I A+G                +D +K G+A LY +  VLSV    FI  +V ET G    E +
Sbjct:  266 WVYKRPMIIGSLLVFFQAMTGINTVILYSSKIFHFAGVDQPIMATASVGTINVITTVISVFLVDYCGRKILLLVSTAAMAFSLGLLSYSLLYLD--DKLQGILAVICVLVFVAGFAVGLGAVIWVVLGEITPSTIRTRAMGVFMAISYACNVFVATCTLGIIKALGS-------------GHKDVEKNGIAKLYLICGVLSVACFIFIAKWVPETKGYQSSEYD 474          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: K3WG21_GLOUD (MFS domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG21_GLOUD)

HSP 1 Score: 153 bits (387), Expect = 1.950e-37
Identity = 89/215 (41.40%), Postives = 134/215 (62.33%), Query Frame = 1
Query:    7 FAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRET 651
            + Y++ +++G  L+  QA TGINTV+ YS  IF  AG+ N  LAT  VG T V +T VS S VD  GRR L+  GT++M LAL +LS SLL+LN    AQG +AV A LLF++GF++G G+V W++L ++ P  IR++AFS F  I+++ N+ + +FTLSAI  +G    P              +K G+A LY +   ++++++ F + +  ET
Sbjct:  295 WTYKKVMVVGTFLVFFQAMTGINTVMLYSAKIFHFAGISNPFLATAVVGFTNVGVTIVSISFVDSYGRRPLLTFGTVMMILALLVLSTSLLYLNDNVHAQGIIAVIAVLLFVAGFAIGLGAVVWVILADMTPVHIRSRAFSFFMGISYICNIVVAVFTLSAISFLGRGPTP--------------EKNGIAKLYLILSGVALMSLMFSHAYAPET 495          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: W4FIH6_9STRA (MFS domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIH6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.610e-37
Identity = 91/225 (40.44%), Postives = 140/225 (62.22%), Query Frame = 1
Query:    1 KVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEEL 675
             ++ Y++P+++G LL+  QA TGINTV+ YS+ IF  AGVDN+++AT SVG   V+ T VS  LVD  GR+ L+L+ + +MA +L +LS SLL L  T + QG LAV   L+F++GF++G G+V W++L E+ PS IR++A   F A+++  N+F+   TL  I A+G              +  D  K G+A LY + C L+V    FI+ +V ET   ++ ++
Sbjct:  269 SLWRYKKPMLLGTLLVFFQAMTGINTVMLYSSKIFHFAGVDNSIMATASVGTINVLATVVSVVLVDTCGRKILLLLSSGLMAASLGVLSYSLLTL--TGKIQGVLAVVCVLVFVAGFAIGLGAVIWVVLGELTPSSIRSRAMGFFMAVSYACNVFVATCTLGIIQALG--------------TGPDVTKNGIAKLYLICCGLAVACFLFIWGYVPETKNITVSQI 477          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: A0A425CAM1_9STRA (MFS domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CAM1_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.480e-36
Identity = 86/217 (39.63%), Postives = 139/217 (64.06%), Query Frame = 1
Query:    1 KVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRET 651
             + A+++ ++ G +L+  QA TGINTV+ YS  IF +AGV N   AT  V +  V +T +S   VD  GRRSL+++GT +M +AL ++S SLL+LN   R QG +AV++ L+F+ GF++G G+V W++L +I P  IR +AF+ +  ++++ N+ I + TLSAID +G           S+P     +K G+A LY +   ++++ +A+IY+FV ET
Sbjct:  296 SLLAHKKVMVKGTILVFFQAMTGINTVMLYSAKIFHIAGVTNPFFATAVVCVMNVGVTVISVRFVDSYGRRSLLIVGTTIMIIALGVISWSLLYLNDNLRLQGMVAVSSVLMFVGGFAVGLGAVVWVILGDITPVHIRTRAFAFYMVVSYMCNIVIAVGTLSAIDFLGR---------GSNP-----EKNGIAKLYLILSGVAIVCLAYIYYFVGET 498          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: A0A8K1C4Y9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4Y9_PYTOL)

HSP 1 Score: 149 bits (377), Expect = 1.410e-35
Identity = 88/213 (41.31%), Postives = 135/213 (63.38%), Query Frame = 1
Query:   13 YRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRET 651
            ++  V +G +++  QA TGINTV+ YS  IF  AGV N  LAT  VG+  VV+T  S SLVD  GRR L+L GTL+M LAL +LS SLL+LN   + QG +AV + L F++GF++G G+V W++L +I P +IR++AF++F  ++++ N+ I ++TLSAI  +G                 + +K G+A LY +   ++V ++ +IY  + ET
Sbjct:  408 FKSTVAMGTIMVFFQAMTGINTVMLYSAKIFHFAGVTNPFLATAVVGVVNVVVTIFSVSLVDSYGRRPLLLGGTLMMILALIVLSLSLLYLNNDLKVQGAIAVVSVLTFVAGFAVGLGAVVWVVLADITPVKIRSRAFAVFMGVSYVCNILIAVYTLSAISFLGR--------------GENPEKNGIAKLYLILSGVAVASLIYIYSRLPET 606          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: A0A7S3H3G4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3G4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.260e-33
Identity = 86/199 (43.22%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   79 VVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRETMGKSLEEL 675
            VVFYSTTIF LAG D  ++ T  VG+  V+ T ++ +L+D+ GR+ L+L GT +M  +L +LS  +L        QG +AV A L F+ GF+LG G+V W +++EI+P R+R +A S+F ++NW  NL IGL TL+AID +G   + SS     + +A   +K GVA LY +F  ++   +AFI  +V ET GKS +E+
Sbjct:    1 VVFYSTTIFGLAGFDQAIIGTSLVGVINVLTTILTSNLIDRYGRKVLLLTGTSIMLGSLLVLS-IVLVSPVEEGVQGIIAVLAVLSFVFGFALGLGAVVWTVMSEIMPDRLRIKAVSLFLSVNWGCNLIIGLLTLTAIDGLGG--VKSSMDDDETAAA---EKNGVAYLYFIFAAMTACCLAFIQIYVPETKGKSPDEV 193          
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Match: A0A6G0XS51_9STRA (MFS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XS51_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.700e-33
Identity = 88/217 (40.55%), Postives = 135/217 (62.21%), Query Frame = 1
Query:    1 KVFAYRRPVMIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTSVSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAATLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLFTLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAFIYFFVRET 651
             ++ Y++ +++G  L+  QA TGINTV+ YST IFE+AGV + ++AT SVG   V+ T  S  LVD  GR+ L+L+ + +M+++LA+LS +LL L+     QG LAV   L+F+ GF++G G+V W++L E+  S IR++A  +F AI++  N+F+   TL  I A+G           S P+ +D  K G+A LY + C LSV    FI  ++ ET
Sbjct:  264 SLWRYKKAMILGSFLVFFQAMTGINTVMLYSTKIFEIAGVKSPIMATASVGTVNVLATVFSVVLVDTCGRKILLLLSSGLMSISLAVLSYALLTLSG--EVQGILAVVCVLIFVIGFAIGLGAVIWVVLGELTVSSIRSRAMGVFMAISYACNVFVATCTLGIIQALGT---------GSDPAEKD--KNGIAKLYLICCALSVACFIFIAQWLPET 467          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7567.18767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KB43_9PHAE2.970e-17598.95MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3V2_ECTSI1.970e-17098.25Hexose transporter pGlT n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CZ46_9STRA1.280e-4547.00MFS domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A1V9ZZU5_9STRA2.880e-3842.86Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]
K3WG21_GLOUD1.950e-3741.40MFS domain-containing protein n=1 Tax=Globisporang... [more]
W4FIH6_9STRA4.610e-3740.44MFS domain-containing protein n=6 Tax=Aphanomyces ... [more]
A0A425CAM1_9STRA3.480e-3639.63MFS domain-containing protein n=2 Tax=Peronospora ... [more]
A0A8K1C4Y9_PYTOL1.410e-3541.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3H3G4_9STRA2.260e-3343.22Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6G0XS51_9STRA4.700e-3340.55MFS domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7567contigEcto-sp13_S_contig7567:269..3844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score481.9
Seed ortholog evalue2e-133
Seed eggNOG ortholog2880.D7G3V2
Model size1394
KEGG koko:K08150,ko:K20286
KEGG TC2.A.1.1.25,2.A.1.1.62,2.A.1.1.63,2.A.1.1.66,2.A.1.8
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005215,GO:0005351,GO:0005355,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0022804,GO:0022857,GO:0022890,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0034219,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046323,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0097708,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:1902600,GO:1904659
Exons4
EggNOG free text desc.glucose import
EggNOG OGsKOG0254@1,KOG0254@2759
Cds size834
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7567.18767.1prot_Ecto-sp13_S_contig7567.18767.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7567 296..3311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.0084372-UTR-Ecto-sp13_S_contig7567:268..2951681464026.0084372-UTR-Ecto-sp13_S_contig7567:268..295Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7567 269..295 +
1681464026.066447-UTR-Ecto-sp13_S_contig7567:3311..38441681464026.066447-UTR-Ecto-sp13_S_contig7567:3311..3844Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7567 3312..3844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.0203629-CDS-Ecto-sp13_S_contig7567:295..3251681464026.0203629-CDS-Ecto-sp13_S_contig7567:295..325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7567 296..325 +
1681464026.0322711-CDS-Ecto-sp13_S_contig7567:650..7221681464026.0322711-CDS-Ecto-sp13_S_contig7567:650..722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7567 651..722 +
1681464026.0419893-CDS-Ecto-sp13_S_contig7567:1619..18051681464026.0419893-CDS-Ecto-sp13_S_contig7567:1619..1805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7567 1620..1805 +
1681464026.05159-CDS-Ecto-sp13_S_contig7567:2765..33111681464026.05159-CDS-Ecto-sp13_S_contig7567:2765..3311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7567 2766..3311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7567.18767.1

>prot_Ecto-sp13_S_contig7567.18767.1 ID=prot_Ecto-sp13_S_contig7567.18767.1|Name=mRNA_Ecto-sp13_S_contig7567.18767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=278bp
MIGVLLMLIQAFTGINTVVFYSTTIFELAGVDNTVLATVSVGLTLVVMTS
VSGSLVDKAGRRSLMLIGTLVMALALAILSGSLLWLNATPRAQGCLAVAA
TLLFISGFSLGQGSVCWILLTEIVPSRIRAQAFSIFTAINWLSNLFIGLF
TLSAIDAMGEWLLPSSGGGSSSPSARDQQKVGVAGLYALFCVLSVLAVAF
IYFFVRETMGKSLEELEEGGGGGGSAGGGSADRLAFDIGGAREGLGDDSD
STNALLQLSEHGGADDEDGEGACRVLI*
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mRNA from alignment at Ecto-sp13_S_contig7567:269..3844+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7567.18767.1 ID=mRNA_Ecto-sp13_S_contig7567.18767.1|Name=mRNA_Ecto-sp13_S_contig7567.18767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7567:269..3844+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGTTCGCGTACCGGAGGCCCGTGATGATCGGAGTATTGCTGATGCT GATTCAGGTACGCCTTCACACACCAAGGTGTTGCCATGGTTGCCCCCAAA CACCTGGAAATGCAACGCTATGACCCGTTCACCCTGTATGCTGTCATTCG GTGATCACAGCAGCTGTCGATTCGGCGCACGCATAGGGTTAGGGGGGACA GAGGGGGAAAGACCCCGGGACCAAGTCGACCACCCCTAAGGTTGACACCA ATGGTGGCCACACTGCGCGTACGGTTGCTCGCTTCAACCTGCCGGGGTCG TGCACGATATGGGGCAAAAAAAATATTTCCTTGTTATTTTTTCACCACCC TCGCGCTGCACGCATCACGCACGCGCACTCAGGCGTTCACGGGAATCAAC ACGGTCGTCTTCTACTCGACGACAATCTTCGAGCTGGCAGGCGTCGACAA CACGGTAAGAGAACGGAGACGAGGACGTGTGCAGTAGGAGTCATCGGAAA AGTTCCGGTGTGTTTTTTCTTATCGTTCAGCGCGCGGCGGCTTGCTCAGT TTCGGTGCGAAGAACAGGAGGGTTGAACGTGCCAAGAAGCAATGCAGACT AAACAAAGAGTTTGCTTAGGGTAAGGAATAAGGTGAGGTTTTAAGGTTAT AGCCCGAATCGCGATTGGGGTCGGGCGATATACGGCGATCAGGGTTAGTG CCGAGAGCGACCAACGTTTCCAGAACGTGTCTCGACCATGCCCTGGTGCT ATACATTCCGTGTTTAGTGAGAAACTGCTTTTCAAGCTGGCTTCGGTCAG CTTCTTCTCGACGATGACGGATATTGGGTGTTCTCTGCGCCGCGGCTCTA CGTGCTAGCCGAGCACACGCGTAGGACTTGTATGACGCGAGAGTGCTTGC GGGGCAGTCCAAACCTCGAACGGATGTTCGTTTTGGCTTCAGCAGCCCCC TCCCTTCTCGTGGCGTCTGATATCGCGAACTCTCGACCCGGGACAGCACG GCTTCGCCGCATCCCCGTGATGACGTATCTCCGCAGTCCGCACGTCTTCA GCCAGTTCAATGTTTTTCAATGAACTCGGTCCTTTTTTTTTTGCTTTGGC GTGACAGCGATAGACACGAATCTCGTCATGACTGCTTTGAGTTTCCCGGC AGTCGACGTGTGTGACACGGCGGGCAGAGATTTCCCTTTGTCCGAGAACA AGCCGAGCTTTTTTTTATTGACAGCGTGCCGTACTGTTGAAAGTCAACAC ATGATTCGACCTATGAACGGCGTGTGTTCTCACTGTGGCCACCACCGCCG TCCTAACGTGCGGGGCCAACTCGCACTGCCGGGAAAAAAAAAAATGTGCA GGTTTTGGCGACCGTTTCCGTGGGATTGACCCTCGTCGTGATGACCTCCG TGTCCGGGAGCCTGGTCGACAAGGCCGGGCGGAGAAGCCTCATGCTGATA GGCACGCTCGTCATGGCCCTCGCCCTGGCCATCCTGAGCGGCTCGCTGCT TTGGCTGAACGCGACGCCTCGGGCGCAGGGATGTCTGGTGAGCCGCTGCT GTTGTCGACGTCATTTTTCACGTTCAAAATGTTTTTTTTCGAAGGTACGG CAATGTAGTACGATCAGCTGTTGTTTCTTTCTGTCGTGACTTAAAAGTTG TGATGTTGGCCTTTTCTACCCAGCGATTCCGTATTCCGTGCTGGTTGAAC CAGCCGATGAAAAACTAGGTCTGTGGGTGGTGCACGTGTAAGCTACTGTC GCCTGCTCATGGCGCTGCATGGGTTGGGATGGCCGACTGCTGACCCTCAT TCCTCTGCTCGACTATACGTAGTGAGCACGGGGTCATTGTAATGAGCACG GGGTCATCCCTCCGGTGCGTCCAGCGTCATATGAAAAGCTTCAAGGAGGT CGTTTGCTTCCGTTTTGAAGGGTATGTGGGATATAGGGAAGGGACGCTAG CAAACAGAGTTAACACTTTCGTTAGACCCTGTTCAACAACTCGAAGACCT ACAACTTTTCCCATCGCACCCTTTTGTGCGTTCACAGGAAAGTGCGCATG TTTCTTTCCTCCCCTCCCGCTTTCCGGCTAGACGTTTACTCGCCGCCACG CTTTGCTCCGCCCCCCCCGCCCCTCCCAGTCTGCCCTTGATCATGCTCAC TTCCCTCTTTTGCCGCGGTTGCGATCATCGCTCTCTTCTCTATTTCTGAG CGTTCTATGTCGTTCCTTCTCCTTTCGGAACGTGTTTTCCTTCTTCTCTT TTGGTCTGTACTTGATAGTATCACCCCCTCCCTCCCCCCCCTCTCTCGTC TCTTCGCGACATTCCTCCCCCCCCCACCCACCCCCCTCCCATCCCTCCAG GCTGCTGCATTGATTTACGTTGTGCTTGCTCCCTGTAAGTTAACCTGCGC TTGATCATTATCTGCTTCTTTTCCTGCCTGCCCCCTCGTCGCGACACTCA TTCCCTTCTTATTGGTGGGTCTACTCCATCGACATCGCGGCTTACAGGCG GTGGCTGCGACTCTCCTCTTTATCTCGGGCTTCTCCCTCGGCCAGGGATC CGTCTGCTGGATCCTGCTCACGGAGATCGTCCCGTCCAGGATCCGCGCAC AGGCGTTCTCCATCTTCACGGCCATCAACTGGCTGTCGAACCTCTTCATC GGCCTCTTCACCCTCTCGGCGATAGACGCCATGGGAGAGTGGTTGCTCCC GTCTTCGGGAGGGGGGTCGTCGTCGCCGTCCGCTAGGGACCAGCAGAAGG TCGGCGTTGCCGGGCTGTACGCCCTCTTCTGCGTCCTGAGCGTGCTGGCG GTGGCGTTCATCTACTTCTTCGTGCGCGAGACGATGGGGAAGTCTCTCGA AGAGCTCGAGGAAGGAGGAGGCGGCGGTGGGTCGGCAGGCGGGGGTAGCG CGGACCGGCTTGCGTTTGACATCGGGGGAGCGCGCGAAGGGCTTGGCGAC GACAGCGATTCCACAAACGCCTTGCTGCAGCTGTCCGAGCACGGTGGTGC CGATGATGAGGACGGAGAGGGCGCATGCCGAGTATTGATATAGTGTAGTG CTCATGCGGGAATGTACAACGAGATTTATCTCATGATAACGTTTTTTTCT TTTTTGTTACCTGTGCCGTGTGTCAGAGATCGATCAACGGACAATATTGT ATAGCGGTGTGCGTTTTAGGGATTGTGCCGGCGACGGGGGTCGGTGCGTT GCAGGAGGCAACGATAACTCTGGACCGCTCTGGTCCGGAAGGAGGAGAAA TACAGCGTACCAGGAGACAACCCACAACAAGTCGGTTCTTTACCCAGGAC CTGGGGAGAACACTTGCCGAACACTATTCTCAACTGTTGACGTTGGTCCT CTCGGAGGACGAGCCCACTTGCTGCCTCTTGTAAAGTCTACTCCAGGAAG ATCGAATTCGACCAAGGTTCCTCGACAACCTAAGAACCTTCATCGAGCTT GACCTTGCCCCAGGACAAAACGTGCCATGCTCGTTCTGCAGAGCGACTCG CCCTAAACGGCGGAAGAATCCATTCTCAGGCGTTCCTCCCATGCAAAGTT CTGGCAGGTACAACGTTTGAGTGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7567:269..3844+

>mRNA_Ecto-sp13_S_contig7567.18767.1 ID=mRNA_Ecto-sp13_S_contig7567.18767.1|Name=mRNA_Ecto-sp13_S_contig7567.18767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7567:269..3844+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGGAGTATTGCTGATGCTGATTCAGGCGTTCACGGGAATCAACAC
GGTCGTCTTCTACTCGACGACAATCTTCGAGCTGGCAGGCGTCGACAACA
CGGTTTTGGCGACCGTTTCCGTGGGATTGACCCTCGTCGTGATGACCTCC
GTGTCCGGGAGCCTGGTCGACAAGGCCGGGCGGAGAAGCCTCATGCTGAT
AGGCACGCTCGTCATGGCCCTCGCCCTGGCCATCCTGAGCGGCTCGCTGC
TTTGGCTGAACGCGACGCCTCGGGCGCAGGGATGTCTGGCGGTGGCTGCG
ACTCTCCTCTTTATCTCGGGCTTCTCCCTCGGCCAGGGATCCGTCTGCTG
GATCCTGCTCACGGAGATCGTCCCGTCCAGGATCCGCGCACAGGCGTTCT
CCATCTTCACGGCCATCAACTGGCTGTCGAACCTCTTCATCGGCCTCTTC
ACCCTCTCGGCGATAGACGCCATGGGAGAGTGGTTGCTCCCGTCTTCGGG
AGGGGGGTCGTCGTCGCCGTCCGCTAGGGACCAGCAGAAGGTCGGCGTTG
CCGGGCTGTACGCCCTCTTCTGCGTCCTGAGCGTGCTGGCGGTGGCGTTC
ATCTACTTCTTCGTGCGCGAGACGATGGGGAAGTCTCTCGAAGAGCTCGA
GGAAGGAGGAGGCGGCGGTGGGTCGGCAGGCGGGGGTAGCGCGGACCGGC
TTGCGTTTGACATCGGGGGAGCGCGCGAAGGGCTTGGCGACGACAGCGAT
TCCACAAACGCCTTGCTGCAGCTGTCCGAGCACGGTGGTGCCGATGATGA
GGACGGAGAGGGCGCATGCCGAGTATTGATATAG
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