mRNA_Ecto-sp13_S_contig7564.18764.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7564.18764.1
Unique NamemRNA_Ecto-sp13_S_contig7564.18764.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: D8LFM0_ECTSI (Peptidyl prolyl cis/trans isomerase like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM0_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 1.120e-172
Identity = 249/260 (95.77%), Postives = 255/260 (98.08%), Query Frame = 1
Query:    1 HSLAGSSRRWIHAMPAAGASLGLPQQPRPCTGRPLMMSSATGAVTGEEICRAAHVLCADEDAAETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKLDGFVNLPLSKFEEWSDKLSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSSVGVY 780
            +SLAGS+RRWIHA+PAAG SLGLPQQPRPCTGRPLMMSSAT AVTGEEICRAAHVLCADEDAAE ALTRIKSGEQFGDVA DMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEEL KAKLDGFVNLPLSKFEEWSDKLSGEGAILDA+KDTV+MCHHGMRSNQMAQHLATKAGFK+VWNVEGGLHAYASHVDSSVGVY
Sbjct:   49 NSLAGSNRRWIHAVPAAGTSLGLPQQPRPCTGRPLMMSSATDAVTGEEICRAAHVLCADEDAAEAALTRIKSGEQFGDVATDMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELGKAKLDGFVNLPLSKFEEWSDKLSGEGAILDAEKDTVIMCHHGMRSNQMAQHLATKAGFKRVWNVEGGLHAYASHVDSSVGVY 308          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: M2Y4U7_GALSU (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4U7_GALSU)

HSP 1 Score: 197 bits (500), Expect = 8.380e-56
Identity = 98/212 (46.23%), Postives = 144/212 (67.92%), Query Frame = 1
Query:  145 ICRAAHVLCADEDAAETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKLDGFVNLPLSKFEEWSDKLSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSSVGVY 780
            I RA H+L   E  A+T L ++K+G+ F ++A  +S CPSK++GG+LGWF++G MVA FE ACF+  P  ++K+QT++GWHV+ +  +AI P  + VE+  +I     S         Q VDVRE+ EL  A+LD F +LPL ++E+W++++   G +LD +K+T+VMCHHG+RS QM  +LA + GF KV N+ GG+ AYA  VD S+GVY
Sbjct:   12 IVRARHILVETEGMADTLLEQLKNGQHFAELAKAVSRCPSKERGGELGWFRRGTMVASFEDACFQGKPDQLIKIQTEYGWHVIQVQGQAIEPGSITVEDFAKIYPHQISHV-------QLVDVREQNELELARLDHFFHLPLGEYEKWAEQVES-GELLDKEKETIVMCHHGIRSAQMCSYLAQQ-GFLKVRNLIGGIDAYAHQVDPSIGVY 214          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: A0A4D9D039_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D039_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.470e-51
Identity = 97/213 (45.54%), Postives = 137/213 (64.32%), Query Frame = 1
Query:  151 RAAHVLCADEDAAETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKLDG--FVNLPLSKFEEWSDK-LSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSSVGVY 780
            RAAH+L   E+ A+  +  +++G  F ++A   S CPS+ +GGDLGWF  GQMV  FE  CF N  G + KVQT+FG+H++ +  +A  P      +LG+++   + G  +V    Q +DVRE +EL +A++ G  F+NLPLS+F EW  K LSGE  +LD DK TVV+CHHG RS Q A  L ++AGF +V+N+ GG+H YA  VDS +  Y
Sbjct:   16 RAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFGPGQMVPAFEEVCFNNPVGALAKVQTEFGYHIIQVNGKATAPGDWHPSQLGDLVAGGQEGREEV----QLIDVREPDELLRAEIKGAGFLNLPLSQFAEWRPKILSGE--LLDKDKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTY 222          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: A0A7S2Y1W3_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1W3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 3.400e-50
Identity = 94/209 (44.98%), Postives = 132/209 (63.16%), Query Frame = 1
Query:  151 RAAHVLCADEDAAETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKL---DGFVNLPLSKFEEWSDKLSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSS 768
            +A+H+L   E+ A+  L R+  GE F  +A+D S CPSK +GGDLGWF KGQMV EFE  CF    G +  V+TQFGWHV+ +  +   P+ + V+EL E+LE  + G      + Q +DVRE +EL   K     GF+NLPLS+F+ W  K+  +G +LD  K T+ +CHHG+RS Q    LA++AGF+ V NV GG++ Y+  +D S
Sbjct:   64 KASHILVKSEETAKMLLERVNDGEDFAALASDNSDCPSKAQGGDLGWFGKGQMVPEFENVCFTGVKGDVSLVETQFGWHVIKIEGQGFPPKDIDVKELAEVLETTERG------EVQLIDVREADELEGGKNLTDKGFINLPLSEFQTWGRKVV-DGDLLDKSKRTICLCHHGIRSRQAGNFLASQAGFEDVANVVGGINNYSDKIDPS 265          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: I2CR14_NANGC (Peptidyl prolyl cis trans isomerase like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR14_NANGC)

HSP 1 Score: 183 bits (465), Expect = 1.740e-49
Identity = 96/213 (45.07%), Postives = 137/213 (64.32%), Query Frame = 1
Query:  151 RAAHVLCADEDAAETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKLDG--FVNLPLSKFEEWSDK-LSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSSVGVY 780
            RAAH+L   E+ A+  +  +++G  F ++A   S CPS+ +GGDLGWF  GQMV  FE  CF N  G + KVQT+FG+H++ +  +A  P      +LG+++   + G  +V    Q +DVRE +EL +A++ G  F+NLPLS+F EW  K LSGE  +LD +K TVV+CHHG RS Q A  L ++AGF +V+N+ GG+H YA  VDS +  Y
Sbjct:  105 RAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFGPGQMVPAFEEVCFNNPVGALAKVQTEFGYHIIQVNGKATAPGDWHPSQLGDLVAGGQEGREEV----QLIDVREPDELLRAEIKGAGFLNLPLSQFAEWRPKILSGE--LLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTY 311          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: A0A7S2JMB7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JMB7_9EUKA)

HSP 1 Score: 181 bits (458), Expect = 1.080e-48
Identity = 99/207 (47.83%), Postives = 139/207 (67.15%), Query Frame = 1
Query:  151 RAAHVLCADEDAAETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFE-NDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKLDGFVNLPLSKFEEWSDKLSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSS 768
            RA+H+L + E+ A+  L R+  GE F  +A + SSCPS  KGGDLGWFK+G MV EFE A FE ++   +VKV+TQFGWH++ +  +      ++ EE  +IL+      GD   + Q VDVREE+EL  A L GF+NLPL++ E+W+ ++ G G +LD  K+T+VMCHHGMRS QM   L  + GF KV N+ GG++AY+++VD S
Sbjct:   96 RASHILVSGEEQADEILARLNKGEDFAKLARENSSCPSGMKGGDLGWFKRGMMVPEFEQASFEASNLNKVVKVKTQFGWHLLTVTGQRAGIGAVSAEEFKKILD----ERGD---QVQLVDVREEDELRLASLPGFINLPLTQAEKWAPEVEG-GVLLDKSKETIVMCHHGMRSAQMCGFLE-RVGFDKVKNLTGGINAYSNNVDPS 293          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: A0A8J5X8B1_DIALT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8B1_DIALT)

HSP 1 Score: 174 bits (442), Expect = 1.150e-46
Identity = 97/257 (37.74%), Postives = 155/257 (60.31%), Query Frame = 1
Query:   31 IHAMPAAGASLGLPQQPRPCTGRPLMMSSATGAV--TGEEICRAAHVLCADEDAAETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKLDG--FVNLPLSKFEEWSDKLSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSSVGVY*SE 789
            +  +  A A+  +  +P     R  +++SA GA         RAAH+L   E+ A+    +++ G  FGD+A  +S C S+ +GG+LGWF  G M  +FE ACF+  PG++VKVQ++FGWH++ +      P  ++  EL   ++     A DV    QFVDVR  +E+S+A + G  +VNLP +++ EW DK++  G +L+ +K+T+V+CHHGMRS++ AQ +    GF+ V ++ GG+ AYA+  D +VG Y +E
Sbjct:   13 LFGLARASATARVASRPASRLARSAVLASAQGATETARPNQARAAHILVDTEELADAIRAQVEGGMSFGDIAKTVSLCTSRSRGGNLGWFSAGMMTPDFERACFDATPGSLVKVQSEFGWHLIHVEETRAAPTDVSPAELKRRID-----ANDVHG-VQFVDVRSADEVSRASIPGVQWVNLPFNEYSEWGDKVAA-GELLEHEKETIVICHHGMRSSRTAQFMLQN-GFRSVVSLLGGIDAYAAEADPAVGRYQNE 261          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: A0A2V3IYG3_9FLOR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYG3_9FLOR)

HSP 1 Score: 169 bits (429), Expect = 1.370e-45
Identity = 88/211 (41.71%), Postives = 129/211 (61.14%), Query Frame = 1
Query:  151 RAAHVLCADEDAAETALTRIKSGE-QFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKLDGFVNLPLSKFEEWSDKLSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSSVGVY 780
            RA H+L   E+  +    +++ G+  F D+A  +S+CPSKD+GGDLGWFK+  MV EFE A F N PG++VKV+++FGWH++ +    +  + + V+ELG      K G  D  S  Q +D RE  EL  + L  F+NLP+ ++  W+D+       L+ DK+T+VMCHHG+RS      LA + GF  V N+ GG+ AYA  +D+SV  Y
Sbjct:    3 RAKHILVDSEEMIDAIKQQLEDGKGNFADLAKLVSTCPSKDRGGDLGWFKRNIMVKEFEEAAFSNPPGSVVKVKSEFGWHLIQVEEHGMAAKSITVDELGR--RFGKDGTDDPLS-VQLIDCRETSELELSSLPNFLNLPMGEYARWADQFENGKLSLEKDKETIVMCHHGIRSANFCSFLA-QHGFTNVRNLIGGIDAYAKKIDNSVPQY 209          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: S8D8K8_9LAMI (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D8K8_9LAMI)

HSP 1 Score: 162 bits (410), Expect = 1.030e-42
Identity = 91/194 (46.91%), Postives = 121/194 (62.37%), Query Frame = 1
Query:  205 RIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRA--ILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELSKAKLDGFVNLPLSKFEEWSDKLSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSSVGVY 780
            R   GE  GD+A + S CPSKD GG LGW + GQMV EFE A F      IV  +T+FGWH++ +LS    +L +Q+   EL E ++          ++ Q +DVRE +E++KA L GF  LPL +F +W   +S E    D +KDT V+CHHGMRS Q+AQ L T+ GFK+V+NV GG+H YA  VD S+ VY
Sbjct:   37 RASEGEDLGDLAVEYSICPSKDDGGMLGWVRTGQMVPEFEEAAFNAPLNKIVSCKTKFGWHLLQVLSERDQLLLKQIQPSELHERMQDPSFF-----NEAQLIDVREPDEVAKAALPGFKVLPLRQFAKWGPVISSE---FDPEKDTYVLCHHGMRSLQVAQWLQTQ-GFKRVFNVSGGIHEYAVKVDESIPVY 221          
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Match: A0A6T5NIR0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NIR0_HETAK)

HSP 1 Score: 166 bits (420), Expect = 2.320e-42
Identity = 92/208 (44.23%), Postives = 128/208 (61.54%), Query Frame = 1
Query:  151 RAAHVLCADEDAAETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILE--LAKSGAGDVDSKYQFVDVREEEELSKA---KLDGFVNLPLSKFEEWSDKLSGEGAILDADKDTVVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHV 759
            RA H+L  DE  A+  + +I+ G  F  +A   SSCPSK +GGDLGWF + QMV EFE AC+  +   ++KV+TQFGWHV+ L  R   P  + V++L  +L    A+  A       Q VDVRE +EL +       GFVN+PLS+ ++W+ K++  G +LD  K TVV+C  G+RS QMAQ L T+A F+ V +V GG+ AYA  +
Sbjct:  174 RARHILVQDEGEADLLMEQIQGGSDFEGLAQQQSSCPSKAQGGDLGWFGRNQMVKEFEEACYAAEVDDLMKVKTQFGWHVLQLTGRKAPPADLTVQDLAALLADPAAREAA-------QLVDVREPDELQREGSLAAQGFVNIPLSQSQDWAPKIA-RGELLDRTKRTVVLCKKGIRSTQMAQFLLTQAEFEDVASVAGGMDAYAQDI 373          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7564.18764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFM0_ECTSI1.120e-17295.77Peptidyl prolyl cis/trans isomerase like n=2 Tax=E... [more]
M2Y4U7_GALSU8.380e-5646.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Galdie... [more]
A0A4D9D039_9STRA2.470e-5145.54Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A7S2Y1W3_9STRA3.400e-5044.98Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
I2CR14_NANGC1.740e-4945.07Peptidyl prolyl cis trans isomerase like protein n... [more]
A0A7S2JMB7_9EUKA1.080e-4847.83Hypothetical protein (Fragment) n=1 Tax=Cyanoptych... [more]
A0A8J5X8B1_DIALT1.150e-4637.74Peptidyl-prolyl cis-trans isomerase n=1 Tax=Diacro... [more]
A0A2V3IYG3_9FLOR1.370e-4541.71Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gracil... [more]
S8D8K8_9LAMI1.030e-4246.91Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A6T5NIR0_HETAK2.320e-4244.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7564contigEcto-sp13_S_contig7564:1310..5258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score482.3
Seed ortholog evalue1.4e-133
Seed eggNOG ortholog2880.D8LFM0
Model size1785
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
Exons5
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG0476@1,KOG2017@2759
Ec32 ortholog descriptionpeptidyl prolyl cis/trans isomerase like
Ec32 orthologEc-04_001720.1
Cds size744
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7564.18764.1prot_Ecto-sp13_S_contig7564.18764.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7564 1349..4256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464025.6637673-UTR-Ecto-sp13_S_contig7564:1309..13481681464025.6637673-UTR-Ecto-sp13_S_contig7564:1309..1348Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7564 1310..1348 +
1681464025.7398028-UTR-Ecto-sp13_S_contig7564:4256..52581681464025.7398028-UTR-Ecto-sp13_S_contig7564:4256..5258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7564 4257..5258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464025.6837637-CDS-Ecto-sp13_S_contig7564:1348..14611681464025.6837637-CDS-Ecto-sp13_S_contig7564:1348..1461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7564 1349..1461 +
1681464025.696801-CDS-Ecto-sp13_S_contig7564:1831..20691681464025.696801-CDS-Ecto-sp13_S_contig7564:1831..2069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7564 1832..2069 +
1681464025.709817-CDS-Ecto-sp13_S_contig7564:2618..27781681464025.709817-CDS-Ecto-sp13_S_contig7564:2618..2778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7564 2619..2778 +
1681464025.7200677-CDS-Ecto-sp13_S_contig7564:3663..37781681464025.7200677-CDS-Ecto-sp13_S_contig7564:3663..3778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7564 3664..3778 +
1681464025.7302818-CDS-Ecto-sp13_S_contig7564:4138..42561681464025.7302818-CDS-Ecto-sp13_S_contig7564:4138..4256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7564 4139..4256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7564.18764.1

>prot_Ecto-sp13_S_contig7564.18764.1 ID=prot_Ecto-sp13_S_contig7564.18764.1|Name=mRNA_Ecto-sp13_S_contig7564.18764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
MPAAGASLGLPQQPRPCTGRPLMMSSATGAVTGEEICRAAHVLCADEDAA
ETALTRIKSGEQFGDVAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFE
NDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVD
SKYQFVDVREEEELSKAKLDGFVNLPLSKFEEWSDKLSGEGAILDADKDT
VVMCHHGMRSNQMAQHLATKAGFKKVWNVEGGLHAYASHVDSSVGVY*
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mRNA from alignment at Ecto-sp13_S_contig7564:1310..5258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7564.18764.1 ID=mRNA_Ecto-sp13_S_contig7564.18764.1|Name=mRNA_Ecto-sp13_S_contig7564.18764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3949bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7564:1310..5258+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGCCTCGCCGGCAGCAGCAGACGATGGATTCACGCCATGCCGGCAGC GGGAGCGAGCCTTGGGTTGCCGCAGCAGCCGCGACCGTGTACCGGCCGCC CCCTGATGATGTCCTCCGCCACCGGCGCCGTCACCGGGGAGGAGATCTGC AGGTGTGGAGTGGTCTATTTAACTGTCCTCGAGCACGGTAGGCATACAGC AGGAGAGTCTCCAATAGCGCCCGTTATGTAGGTACGCTACAGCCGGCGCG TGCACCCTTTGGTGTGTATATATGCTCTCACGCTTTCCTTTCCACGACTG TTGTTGGTGGTGGTTGTGGTTCTTTCTGTCCAACTCTCGGTCATCTCTTG AGATTCCCCACTCACTCTACAATAACGTAGCTCACCCCACAGTTTTATTC CCAACCCCCCTCCGGTGACGTCATCACGCGGCCCGCCCGCGCATGTGCCC CAAAACTTGGTCCGTCCAACCTACACTGGGCCGGCTGCATTGGCTTACCT ACTCCACAACCCATCGACCTAGGGCGGCGCACGTGCTGTGCGCCGACGAG GATGCCGCCGAGACCGCCTTGACGCGGATCAAGTCCGGCGAGCAGTTCGG AGACGTGGCCGCGGACATGAGCTCCTGTCCCTCCAAGGACAAGGGCGGGG ACCTGGGGTGGTTCAAGAAGGGGCAGATGGTGGCGGAGTTCGAGGCGGCG TGTTTCGAGAACGACCCGGGGACGATCGTCAAGGTTCAGACCCAGTTCGG GTGGCATGTGGTGAGGGAGCGAGCGGGGTTCGTCGGTTGTAGTATTACAG TAGTCGTCGTCATCGTCCTCGTCGTCGTTGTTGTTGTTGCTACAGAGCCA CCACTCAAAGATTGTGGTGAGGAAGCGAGCGGGGCTTGTCGGTTGTAGTA TTATAGAAGTCGTCGTCGTCGTCGTCGTCGTCGAGGTTGTCGTTACGGAG CCACCACTCAAAGAATGTGGTGAGGAAGCGCGCGGGGCTCGTCAGTTGTC GTCTTCGTCTTCGTCGTCGTCGTTGCTAGATAGCCACCACTCAAAGAACC TCTTGGTTTAAACGAGGCTCGCTTCTTTCATCTTAGGGGTATCCCAACAG CGACCATGAAAGTAGGATTTAGTGTGGGACTTTTGGTTGAGCACCTGTCC TTATGGCCACCCTCTTGAACACGTCTCTTTTTGAGGAGCCTGCATACCTT AAATCCCACATTCTCAAGCGGTGGCGCATAGGGTGTTGCCGTGTGCCATT TGGGCTTGCACAACACCGAGATTCTCGTGTTCGTTCGTTCACTCGTCCTG GGCCATTAGGTGGCCCTGCTGTCGAGGGCTATCCTGCCGCGACAGATGGC TGTAGAGGAGCTCGGGGAGATCTTGGAGCTTGCGAAGAGCGGGGCCGGGG ACGTGGACAGCAAGTACCAGTTCGTGGATGTACGAGAAGAGGAAGAATTG AGCAAGGCAAAGCTCGATGGTAAGCACGGGACCGATTAAAGGCATTGTTT TGTTGGGTTGCTGTTGCCCCAAGTTCATCGCGATTATTTGCAGCGAAGGA TTAGGTAAACGTTTGACGTACACTTCTGCGTGAGCGGTTTCATGTACATG CGGGCGTTTCGAGTGGCTTGCGCCGATACCGTTCACCGCGCTTCCTAGCC TTGCGACCTTATAAATTAAACGTGTGGACGACTCTGTCAAAACCACATGC TGGGGTGAAGAGGCGGAAGTTATTGGATTGCCCCCCCCGTTCTCTCTCCT TCACGACCTTCCCCAGAACCAAACCTTATAAATGCGGTGCTGTCAACCCC CGGTTGTTGGTGAATACTTTTCATGCTTCGACCTGGAGTTCCTTCTAACG AGGGTACCGTAGCCTGTGTCCTCGACCATGCTTTCGTAAATCCATATGAA GAGAATGCACGGGTTTCCGGTGATGGGCTCATTTCCACAGAGCTGATTGC ACGGTGCCTTTTCAGCTTCTGGAACGCGAAACAGTGGTCTGTCCGAAGCG CGACGAAATGGCGGCGATGAACAAATGTATCCGGCCATGTACTTTATTGT CGCGAAAAAGTTGCTGTACAGTACACCTCTCGCCATCACGGACGAATTGT TTCTTGTCTGCTCGAACAGGGTTGCACAGCAGTGGTGAGTGCCGCAGGCA ACTCCGGTATTTGTTCTTGGCCAAGGTCGACGGCCGCACGTACGTGCTCA GACTCGGCGTAACTAAAAACGCATGTGATGTTGTGATTCCACGCCTTTGT CGACCAAATTTACACGCTCAGCCGCTTTGACGTGAGGTCGTGAGCTCCGC AGACCTGATGGGTTCCGCTGTCTTGTCGTCTTTACGGGAATGAATGCTCT ACAGGGTTTGTGAACCTTCCGCTGTCGAAGTTCGAGGAGTGGAGCGACAA GCTCTCGGGGGAAGGCGCGATCCTCGACGCCGATAAGGATACCGTCGTCA TGTGCCACCACGGCATGAGGTGGGGGGGGGTTCGCTTGACGCTTGCGCAG GGCATCGACCAACCATAAGCGCTGCTTGGCTTGCTTGGTCTGCGTATCTT GTCTCACGAAAGCATGCCTCCTTCGTACGTACCGGTATGCCGCCGAGGGA TTAGGTCGTCGTTGATGTTTTGTAGTAGGTGGTAGCCCGTTGTTGGTAGT TTGTGCTTGGGATTACAGAAGACGTCCGCGTGGGTTGGACCGGTGCGCAT GGTACGGTAGAAGGTACTGAGCAGAGACCGGCACGATTTTTATGTGAAGA CGACATGCGCAACAGCAGCGGCAGCAGCAGCAACAACAACAACGACACAA CATGTACTTTACTTGGTACAACTATGCAGGTCGAACCAGATGGCCCAACA CCTGGCGACAAAAGCCGGCTTCAAGAAGGTCTGGAACGTGGAGGGCGGTC TGCACGCCTACGCCAGCCACGTCGACTCCTCCGTAGGAGTGTACTGATCG GAACGGCCGGCCGCTTGGGCGCTCTTGCGTTGTGACACGCATCCGTCACG TGGTGGACTTGGGAAGTTTGGCTCACGATTACCACCCCCAACGCGCTCGT TCTATAGCGTTTTAGCAACTTTTTTTTGTAATGGGGTGGTGTTGCTCGTC CGAATACGGCATCGTTGTTCCTAGCGTCGCCCCCGGAGACTGTATCTCCC CAGGGCCGTGCCAAAGGAGAGGGATGTTTCGGTCACCCCGTTTCCCGGGG GGAGGTTAGCCAGCTCAGACGAATTCTTCTCCGAGTCAAGTTTAACAGCA AAAATTGTTCTTTGTAGCGGTTCCGCTGAGATATTTTCCATTCCCACAAA AGGGTACATGTGTTGCTGAAAGCACGCACCTCCTGCCCAACGGACTACGG GAGTGAGGGCCCGAGGGCCAAAACAGGGGTTGGGCGTGTGTCAAAACTTC GATATCGTGAGCCAGATCATCGAAGTTGCCTGTTGACTTTGCATTGGATG AATTGAATTTGGCTCCAATTCCCTTGCGTGCAGGCAGAGAGACGGGACAA CAAACTGAAAATGGACGTGTGTGTGCCACAACCCGTGCCCACTGGGACGC GTTCAACGGCGGTTATGGCGTAGCAAGCAAAGGCGGTCTCGCCCCACACT GCTCTCTCTCTCTCTGTCTCTCTTTCTGCATCTGTTCGTGGCGTGTGTTG AGCGCGTAGAAAAAAGCTGAAAAAAAGGACAAACAAGCCTTGAATCGGCC GGGTCTTTTACCTCATTGAGGACGGCTACCTTAAAGTCGCGAGGTTTCTG GTGTAGCAACGTGTATGCGTTTTGTGCCGCGTACCGCCGTGGGTTCGACT CACGCCTAGCCCGTGTTTTCCAATTCCAATCCGCGTAGGAGTGGTGAAGG ACTGGTTTCTGCTACGGAAACAAACGAACCTAAATAATTTTTTGGCACCG TTTATTCTTCAAGCGGTTGTCGGACCGCCATGTATTAACCGCGGCCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7564:1310..5258+

>mRNA_Ecto-sp13_S_contig7564.18764.1 ID=mRNA_Ecto-sp13_S_contig7564.18764.1|Name=mRNA_Ecto-sp13_S_contig7564.18764.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7564:1310..5258+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCAGCGGGAGCGAGCCTTGGGTTGCCGCAGCAGCCGCGACCGTG
TACCGGCCGCCCCCTGATGATGTCCTCCGCCACCGGCGCCGTCACCGGGG
AGGAGATCTGCAGGGCGGCGCACGTGCTGTGCGCCGACGAGGATGCCGCC
GAGACCGCCTTGACGCGGATCAAGTCCGGCGAGCAGTTCGGAGACGTGGC
CGCGGACATGAGCTCCTGTCCCTCCAAGGACAAGGGCGGGGACCTGGGGT
GGTTCAAGAAGGGGCAGATGGTGGCGGAGTTCGAGGCGGCGTGTTTCGAG
AACGACCCGGGGACGATCGTCAAGGTTCAGACCCAGTTCGGGTGGCATGT
GGTGGCCCTGCTGTCGAGGGCTATCCTGCCGCGACAGATGGCTGTAGAGG
AGCTCGGGGAGATCTTGGAGCTTGCGAAGAGCGGGGCCGGGGACGTGGAC
AGCAAGTACCAGTTCGTGGATGTACGAGAAGAGGAAGAATTGAGCAAGGC
AAAGCTCGATGGGTTTGTGAACCTTCCGCTGTCGAAGTTCGAGGAGTGGA
GCGACAAGCTCTCGGGGGAAGGCGCGATCCTCGACGCCGATAAGGATACC
GTCGTCATGTGCCACCACGGCATGAGGTCGAACCAGATGGCCCAACACCT
GGCGACAAAAGCCGGCTTCAAGAAGGTCTGGAACGTGGAGGGCGGTCTGC
ACGCCTACGCCAGCCACGTCGACTCCTCCGTAGGAGTGTACTGA
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