prot_Ecto-sp13_S_contig75628.18763.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig75628.18763.1
Unique Nameprot_Ecto-sp13_S_contig75628.18763.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length84
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75628.18763.1 vs. uniprot
Match: D8LJD7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD7_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.650e-46
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0 
Query:    3 VFRYEQLLALPAPPSGRDVPGGNGGGLHSCLTCGKMFTTAEFLQQHIARKHARHAGSSADTKVDQEEKTAYPTQLRLFVQ 82
            + RYEQLLALPAPPSGRDVPGGNGGGLHSCLTCGKMFTTAEFLQQHIARKHARHAGSSADTKVDQEEKTAYPTQLRLFVQ
Sbjct:  141 IARYEQLLALPAPPSGRDVPGGNGGGLHSCLTCGKMFTTAEFLQQHIARKHARHAGSSADTKVDQEEKTAYPTQLRLFVQ 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75628.18763.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJD7_ECTSI1.650e-4697.50C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.60coord: 28..55
e-value: 1.8E-7
score: 33.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 32..53
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 30..61
score: 9.93
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 24..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75628contigEcto-sp13_S_contig75628:99..350 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75628.18763.1mRNA_Ecto-sp13_S_contig75628.18763.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig75628 99..350 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig75628.18763.1 ID=prot_Ecto-sp13_S_contig75628.18763.1|Name=mRNA_Ecto-sp13_S_contig75628.18763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MRVFRYEQLLALPAPPSGRDVPGGNGGGLHSCLTCGKMFTTAEFLQQHIA
RKHARHAGSSADTKVDQEEKTAYPTQLRLFVQV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf