mRNA_Ecto-sp13_S_contig75623.18762.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75623.18762.1
Unique NamemRNA_Ecto-sp13_S_contig75623.18762.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75623.18762.1 vs. uniprot
Match: 1433_FUCVE (14-3-3-like protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=1433_FUCVE)

HSP 1 Score: 53.5 bits (127), Expect = 2.210e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 VAYKNVIGSRRASWRVISSIEGKDTV 78
            VAYKNVIGSRRASWRVISSIEGKDTV
Sbjct:   47 VAYKNVIGSRRASWRVISSIEGKDTV 72
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BLAST of mRNA_Ecto-sp13_S_contig75623.18762.1 vs. uniprot
Match: A0A2S5B2A9_9BASI (14_3_3 domain-containing protein n=9 Tax=Opisthokonta TaxID=33154 RepID=A0A2S5B2A9_9BASI)

HSP 1 Score: 52.0 bits (123), Expect = 8.310e-5
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:    1 VAYKNVIGSRRASWRVISSIEGKDTVVRARSQRASGSKVERALFCPNCEEKGTSRFCF-LDTVFYFNLVRACPSG-GPIWISEQETDCPSPAAQTAPPIPQEVDIHLAEQANDACSQSA-TDLSPYIP 375
            VAYKNVIG+RRASWR++SSIEGK+   +  +Q+A+  K  R        EK  +  C  + +V   +L+ +  SG   ++  + + D     A+ A   P++ +   + +A  A S+ A T+L+P  P
Sbjct:   50 VAYKNVIGARRASWRIVSSIEGKEEA-KGNTQQATAIKAYREKI-----EKELAGICEDILSVLEQHLIPSAESGESKVFYHKMKGDYHRYLAEFATGEPRQKNADASLEAYKAASEIAQTELAPTHP 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75623.18762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
1433_FUCVE2.210e-5100.0014-3-3-like protein n=3 Tax=Phaeophyceae TaxID=287... [more]
A0A2S5B2A9_9BASI8.310e-533.5914_3_3 domain-containing protein n=9 Tax=Opisthoko... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75623contigEcto-sp13_S_contig75623:98..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size522
Hectar predicted targeting categorymitochondrion
Exons1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464025.5927532-CDS-Ecto-sp13_S_contig75623:97..6161681464025.5927532-CDS-Ecto-sp13_S_contig75623:97..616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75623 98..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75623.18762.1prot_Ecto-sp13_S_contig75623.18762.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75623 98..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75623.18762.1

>prot_Ecto-sp13_S_contig75623.18762.1 ID=prot_Ecto-sp13_S_contig75623.18762.1|Name=mRNA_Ecto-sp13_S_contig75623.18762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
VAYKNVIGSRRASWRVISSIEGKDTVVRARSQRASGSKVERALFCPNCEE
KGTSRFCFLDTVFYFNLVRACPSGGPIWISEQETDCPSPAAQTAPPIPQE
VDIHLAEQANDACSQSATDLSPYIPSLVAGWGSGAPLCGSARLPRPQSDQ
LPLIRDYKSKIETELTDICDDIL
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mRNA from alignment at Ecto-sp13_S_contig75623:98..617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75623.18762.1 ID=mRNA_Ecto-sp13_S_contig75623.18762.1|Name=mRNA_Ecto-sp13_S_contig75623.18762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=520bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75623:98..617+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCCTACAAGAACGTCATCGGCTCCCGCCGTGCATCGTGGAGGGTGAT
CAGCTCCATCGAGGGCAAGGACACCGTGGTAAGAGCTCGTTCGCAGAGGG
CCTCCGGTAGCAAAGTAGAACGCGCGCTGTTTTGTCCGAATTGTGAAGAA
AAAGGGACCAGTAGATTTTGTTTTCTCGACACTGTTTTTTATTTCAACCT
GGTGCGAGCCTGTCCGTCTGGTGGTCCGATCTGGATATCAGAACAGGAGA
CAGATTGTCCCTCCCCAGCAGCGCAAACCGCGCCGCCTATTCCTCAGGAG
GTGGACATTCACTTGGCTGAACAAGCTAACGATGCGTGCTCTCAATCCGC
GACTGACTTGTCCCCATACATCCCTTCGTTGGTTGCGGGTTGGGGGTCGG
GTGCTCCGCTGTGTGGGTCTGCCCGTTTGCCCCGCCCGCAGAGCGACCAG
CTGCCGCTTATCCGCGACTACAAGTCCAAGATCGAAACGGAGTTGACGGA
CATCTGCGACGACATCCTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75623:98..617+

>mRNA_Ecto-sp13_S_contig75623.18762.1 ID=mRNA_Ecto-sp13_S_contig75623.18762.1|Name=mRNA_Ecto-sp13_S_contig75623.18762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75623:98..617+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCCTACAAGAACGTCATCGGCTCCCGCCGTGCATCGTGGAGGGTGAT
CAGCTCCATCGAGGGCAAGGACACCGTGGTAAGAGCTCGTTCGCAGAGGG
CCTCCGGTAGCAAAGTAGAACGCGCGCTGTTTTGTCCGAATTGTGAAGAA
AAAGGGACCAGTAGATTTTGTTTTCTCGACACTGTTTTTTATTTCAACCT
GGTGCGAGCCTGTCCGTCTGGTGGTCCGATCTGGATATCAGAACAGGAGA
CAGATTGTCCCTCCCCAGCAGCGCAAACCGCGCCGCCTATTCCTCAGGAG
GTGGACATTCACTTGGCTGAACAAGCTAACGATGCGTGCTCTCAATCCGC
GACTGACTTGTCCCCATACATCCCTTCGTTGGTTGCGGGTTGGGGGTCGG
GTGCTCCGCTGTGTGGGTCTGCCCGTTTGCCCCGCCCGCAGAGCGACCAG
CTGCCGCTTATCCGCGACTACAAGTCCAAGATCGAAACGGAGTTGACGGA
CATCTGCGACGACATCCTC
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