mRNA_Ecto-sp13_S_contig7562.18761.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7562.18761.1
Unique NamemRNA_Ecto-sp13_S_contig7562.18761.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7562.18761.1 vs. uniprot
Match: A0A6H5JQW8_9PHAE (DUF2470 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQW8_9PHAE)

HSP 1 Score: 594 bits (1531), Expect = 7.460e-214
Identity = 296/312 (94.87%), Postives = 305/312 (97.76%), Query Frame = 1 
Query:   28 MHTSSAAATGAAHARAAALSLVLWLFLNTPTTCGFQSTTMMVARASWKEYWLAKNGAKDAPAAVPSTHGAARRSSRTRWEPTRPAWWIAKSPAKVQGAPPVLATPVLDGGSFDKEQITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAITIKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELEKAENVEPRPAMANIPPKYVPPELIGTIARICVVMNRDFQDELRNFVRAYGGPVADEMVGNCEMLSLSPDGFMVRSEADPDKPVSIAFSKECQSALDFQKQILLVSERAMAIA 963
            MHTSSAAA+ AAHARAAALSLVL LF NTPTTCGFQ+TTMMVARASWKEYWLAKNGAK+APAAVPST GAARRSSRTRWEPTRPAWWIAKSPAKVQG+PPVL TPVLDGGSFDKEQITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAITIKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELE+AENVEPRPAMAN+PPKYV PELIGTIARIC VMNRDFQDELRNFVRA+GGPVADEMVGNCEMLSLSPDGFMVRS+A+PDKPVSIAFSKECQSALDFQKQILLVSERAMAIA
Sbjct:    1 MHTSSAAASRAAHARAAALSLVLCLFFNTPTTCGFQTTTMMVARASWKEYWLAKNGAKNAPAAVPSTRGAARRSSRTRWEPTRPAWWIAKSPAKVQGSPPVLETPVLDGGSFDKEQITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAITIKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELEQAENVEPRPAMANVPPKYVSPELIGTIARICAVMNRDFQDELRNFVRAFGGPVADEMVGNCEMLSLSPDGFMVRSDANPDKPVSIAFSKECQSALDFQKQILLVSERAMAIA 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7562.18761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQW8_9PHAE7.460e-21494.87DUF2470 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7562contigEcto-sp13_S_contig7562:3155..7235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size966
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionDomain of unknown function DUF2470
Ec32 orthologEc-01_011130.1
Cds size939
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7562.18761.1prot_Ecto-sp13_S_contig7562.18761.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7562 3182..7235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464025.5076096-UTR-Ecto-sp13_S_contig7562:3154..31811681464025.5076096-UTR-Ecto-sp13_S_contig7562:3154..3181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7562 3155..3181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464025.5237436-CDS-Ecto-sp13_S_contig7562:3181..36481681464025.5237436-CDS-Ecto-sp13_S_contig7562:3181..3648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7562 3182..3648 +
1681464025.5348666-CDS-Ecto-sp13_S_contig7562:4892..49901681464025.5348666-CDS-Ecto-sp13_S_contig7562:4892..4990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7562 4893..4990 +
1681464025.545714-CDS-Ecto-sp13_S_contig7562:5371..54541681464025.545714-CDS-Ecto-sp13_S_contig7562:5371..5454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7562 5372..5454 +
1681464025.555815-CDS-Ecto-sp13_S_contig7562:5999..60681681464025.555815-CDS-Ecto-sp13_S_contig7562:5999..6068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7562 6000..6068 +
1681464025.565425-CDS-Ecto-sp13_S_contig7562:7013..72351681464025.565425-CDS-Ecto-sp13_S_contig7562:7013..7235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7562 7014..7235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7562.18761.1

>prot_Ecto-sp13_S_contig7562.18761.1 ID=prot_Ecto-sp13_S_contig7562.18761.1|Name=mRNA_Ecto-sp13_S_contig7562.18761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
MHTSSAAATGAAHARAAALSLVLWLFLNTPTTCGFQSTTMMVARASWKEY
WLAKNGAKDAPAAVPSTHGAARRSSRTRWEPTRPAWWIAKSPAKVQGAPP
VLATPVLDGGSFDKEQITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAIT
IKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELE
KAENVEPRPAMANIPPKYVPPELIGTIARICVVMNRDFQDELRNFVRAYG
GPVADEMVGNCEMLSLSPDGFMVRSEADPDKPVSIAFSKECQSALDFQKQ
ILLVSERAMAIA*
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mRNA from alignment at Ecto-sp13_S_contig7562:3155..7235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7562.18761.1 ID=mRNA_Ecto-sp13_S_contig7562.18761.1|Name=mRNA_Ecto-sp13_S_contig7562.18761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4081bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7562:3155..7235+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGCGCACGCCTTCCGACGCGCGCAATGCATACCTCTTCGGCTGCCGC
CACCGGTGCCGCCCATGCGCGTGCTGCTGCGCTGTCGCTTGTGCTCTGGT
TATTTTTAAACACGCCAACAACATGCGGATTTCAGTCGACCACCATGATG
GTGGCGAGGGCTTCTTGGAAGGAGTACTGGTTGGCCAAGAACGGCGCGAA
GGACGCCCCAGCGGCGGTACCATCTACACACGGCGCGGCGCGGCGGAGCA
GCCGGACTAGATGGGAACCCACGAGGCCCGCGTGGTGGATCGCCAAGAGC
CCCGCCAAGGTGCAAGGCGCACCTCCGGTTCTTGCAACGCCGGTCCTGGA
CGGAGGAAGCTTCGACAAGGAGCAGATAACCGACGTCCTGCAGCACGAGT
ACAGGCACAACCTCGTGCGCGTTGCCCAGAAGTACGACTCCCTCATCGAG
AGCGTGGAAGGCGTGGACGCGATAACCATCAAGGAGCTGGATGGGTGGGT
TCCGAAAAAAACGTTGGGTAATTCCTTGTTGGCGGATGGGCGGCGGCGCG
TCGCACGTCTGGGACCAGGGCTTACTCTGGTGTTTGGGCGAATTCTGCCC
CCGACACTGCGTAGAGTTGTCTCTGCACCGATTCATGGTTTTGCATGAAG
CGAATATTATCCCTTCCTCCGTCGTTGTGCCCGATGCGCTGCTGACAGCG
GTGGCAAGTGTCCCAAGAAATATACAACGGCTGAAAAAACTACGTCACAA
ACCAGCCCCTTCCGAACAGCGTTGCGGGTGCTGGTTGCTGTTGCTGTAGA
ATCTCGTCTCTTTGTGGTTTTGGATTGGCCAAGGCAGCCAATTGCTTCAA
GTGCGAAGCGTGACATGGTGACATCACGATTATCGGGGCACAACCCTGCC
GTGCGAAGACATGTAGCGAACGCTTGTCACTTCATGTGATCTACCAACGC
ATTTTGTGATACGTGAAGCTATTCTTGCAAGTGCTTGAAATGAGTCGCGT
GCGTGCGATTGTCAATGAAACATTTCTGCTATGGCGTCGAATGTCGGTAT
GTGTAGATGTGTGGTGTGTGCGTGTTGCGTGAGAGAATATTTCGTATGCA
CAGCAATGTGCACAGTCACACCCGCCTCACGTTACGCATGTGCGCGGTGT
TTTGGTCGTGCTGTTTAGCAGCTGGGCAATGCCACCCATGGAACGTACTG
CTGTAGAACAATTATGCACGTGACATAGGAGAAACCCACTTTATTTGAGA
CTGGCCGTGGGACGCTACGTATGCTTCTCTATTCGAAGGGCTGTTGTGTG
ATGTGTGGAAGGTATCTTGGAGGGTTCATTCAGGGAAGCTGTTGGATACG
GGACTTGTTTGGGTCTGGTTTTGAGTTTTTGGCCATGTGCTACTGATGTT
CAACATGGAGAGATAAGTCATGCCAGCTAGACCTATTACTCCTCTCTTCT
GTTGATTGGAGTGCAGAAATTGCTCACCTGTGGTCGAGAAGAAATTTGTA
GCAGTCCTTCGCCCGACGTTGTTGCACATTTGATAAGTCATACCTGACGC
ACGACGCGGTAGATATGTAGAACATGACAAGCTCCACCGTGAGAGACAAA
AAACTCGATGTGTGGGCATAACGTTGCAGGAAATACAACTACGAGTAGCA
AGCGCCTCGACCAATGTTTTTTCAGCGCCGCCTTGTCGTTTTCTTGATTA
TTTTCCCCGAACGTGCATCATGTCTTTTTTGCCCCCAGGGATCACATGCA
GCTGGACGTTGTTTACTGCGATCAGGGAGAGCGAACCTGCGTCGCGGTTG
CAGTACCCGTCATTTTCCCGTACCATTGCAACGACGGTAAGCATGTCAGA
CATGCACATGTCGTAAAAAGTGTATCGTAGCGGAGACAAAGCCCTGAAAC
CGCTGCGCTCCCCGCCCACATCGTTTCCTGCTGTTGGTGTCCATGATGGC
TGTTATTTGTTTTGCTGCCGTCAAGGTACTCAAACAAAGCGAGCTTGACG
TGAGACATTATTCCAAGGCCTTGCGTTGCGTGGGGTTAGCGACCAGAAGA
AACTACTTATGGATCGGCGTCGGTATCACCCGAAGGCAATAAATTAAACC
CATAAGAGATGACACTTTACTGACCTCGCTTTCGGTCCGTCGTTTCTTGG
TGCGCTCCTTTGGCCGTGCGACCTGCGCGATTCTTCGTCCCCCCGTTGGT
TCTATTGGTCCCATCAGCTGACTGCGTTATTGGCGTCATCCACGAGCTGG
AGAAAGCGGAGAACGTGGAGCCAAGACCAGCCATGGCGAACATTCCCCCG
GTAGGAACAAAAAAAGCACAAAAAAACACAAGATAAAACGCGATACAGGT
GTCGATAGCGCCCGCGTAATTGCGTGTGTCTCTGCTTCTGCAGATCGCAA
ACACTTGTATGCACGTGCGCGTCGCCTCTGGCGCAATCTGCGAGAGTATA
TGCATGCAAAAACATGTTTTATTTTTGTTTTTTTACCCAGCATGTAGGAT
ACCATACATGATATATCTGTCATGCACACTAAGTAGTTTTGCGGGGTTGG
CTGTGTTAGCGTTCCAGGAATAGAGCTTGTTGTACTCCAGACCTTGACCC
CGGCGGTGTGTTCGTTGGTCATTGTGATCCATTGTACTCGTGTTTGGAAG
AGTCAAAACCTGGTGTCAAAATGCATGGGTGCTAGACAGCTTTCTGAATA
TTGGCAGTAGGCTAGCATACAGTCCTGAACTACGCCGTCAATCGCTTCCA
ACGCTCTTGCTGCCAAAGCATGCACGCGTAAACATGTGTCATTCTTTCCT
CTTGTCACCTGATTTCCCGCATCCTCTTGCTCGCTTCCCTTGCAGAAGTA
CGTGCCGCCGGAACTTATCGGTACGATCGCAAGGATCTGTGTCGTGATGA
ACCGAGATTTCCAGGTTTGTGGTTGTCTTGTCTTCGTGGACACGGGGAAA
AACCAATTTTATCGCGTGCTTGATTGGAGAGGATGCCGATCGAAGAAAGG
TTTTGATTTTCGTATCGCCCTTTGGCCAAGCAGTTGTTGCAGGGAACATA
TTCGATGCACCCACGGGTACGCATACAAGGCATGCACCCACACTTTTTTT
ACCGACGGAACCACCCAACCAAGAGCTACCTAGGCCCACACAACAAACAC
CTACCCAGGTCGACACCAGCCTACACGCATCCAAGCCATACCAACCTAGG
TCGACCGCATTAACACCTATCTAGCACCTATCCAAGCAATACCAACCTAG
AACTGAGCCACCCAGCGCCGACCTAGCCCTAATGCAGGCACACCAACGTA
GACCTGAGCCACCCAACGTCAACGTAGCGCTTATTGGGTAGGTTTAGGGT
TGGTGTTGGGATGTTAGCCCGTTTGATGTAAGTTGCTGGTTGGAGCGACA
GGTGGAAGAAGCAAGAAACAAACGCATACATGGTCCTGGCGCTCGTTCCC
CAAACTGAATTTCTGTCTGTAGAAAAAGCATGGGTGCATGTCTTATATCC
GTACCCGCGGGTGCATACAACTGTGGGTGCTGTTTCAGCGTCAAAGTTTG
CGAGCAAAGAAACATGAATGCTGTATCAACCAACGCGGCTGGAGTTCGAG
TACTACCAATTATTTTAGGTGTTGCCGCGCACGTAACGTGCATGTGAATG
AACATGTCAAGAGCAAGTGAAGTAAACATCAAACCTTCGGGCGTTCTCCT
TAGAGAAAGGAGGCGTTTCCTCCCCCTCTCGTACCCTTCAAACCGGCAGA
ACCGCACGAACAACGGTTTGTTGATCACTGTCGTGCACGAAGGATCGAAC
CCTTGGTCCCTCTTTCAACTCAAGTGCCAACTTCGATGCTGCTGCACTGT
ACCCTTCAGGACGAACTGAGAAACTTTGTGCGAGCATATGGGGGACCGGT
TGCTGACGAGATGGTCGGGAACTGCGAAATGCTCTCCCTCTCGCCTGACG
GTTTCATGGTGCGGTCGGAGGCGGACCCAGACAAGCCAGTGTCGATAGCC
TTCTCCAAGGAATGCCAGTCTGCATTGGACTTCCAAAAGCAAATCCTGTT
AGTCAGTGAGCGGGCCATGGCGATTGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7562:3155..7235+

>mRNA_Ecto-sp13_S_contig7562.18761.1 ID=mRNA_Ecto-sp13_S_contig7562.18761.1|Name=mRNA_Ecto-sp13_S_contig7562.18761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7562:3155..7235+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATACCTCTTCGGCTGCCGCCACCGGTGCCGCCCATGCGCGTGCTGC
TGCGCTGTCGCTTGTGCTCTGGTTATTTTTAAACACGCCAACAACATGCG
GATTTCAGTCGACCACCATGATGGTGGCGAGGGCTTCTTGGAAGGAGTAC
TGGTTGGCCAAGAACGGCGCGAAGGACGCCCCAGCGGCGGTACCATCTAC
ACACGGCGCGGCGCGGCGGAGCAGCCGGACTAGATGGGAACCCACGAGGC
CCGCGTGGTGGATCGCCAAGAGCCCCGCCAAGGTGCAAGGCGCACCTCCG
GTTCTTGCAACGCCGGTCCTGGACGGAGGAAGCTTCGACAAGGAGCAGAT
AACCGACGTCCTGCAGCACGAGTACAGGCACAACCTCGTGCGCGTTGCCC
AGAAGTACGACTCCCTCATCGAGAGCGTGGAAGGCGTGGACGCGATAACC
ATCAAGGAGCTGGATGGGGATCACATGCAGCTGGACGTTGTTTACTGCGA
TCAGGGAGAGCGAACCTGCGTCGCGGTTGCAGTACCCGTCATTTTCCCGT
ACCATTGCAACGACGCTGACTGCGTTATTGGCGTCATCCACGAGCTGGAG
AAAGCGGAGAACGTGGAGCCAAGACCAGCCATGGCGAACATTCCCCCGAA
GTACGTGCCGCCGGAACTTATCGGTACGATCGCAAGGATCTGTGTCGTGA
TGAACCGAGATTTCCAGGACGAACTGAGAAACTTTGTGCGAGCATATGGG
GGACCGGTTGCTGACGAGATGGTCGGGAACTGCGAAATGCTCTCCCTCTC
GCCTGACGGTTTCATGGTGCGGTCGGAGGCGGACCCAGACAAGCCAGTGT
CGATAGCCTTCTCCAAGGAATGCCAGTCTGCATTGGACTTCCAAAAGCAA
ATCCTGTTAGTCAGTGAGCGGGCCATGGCGATTGCGTAA
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