mRNA_Ecto-sp13_S_contig12230.1876.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12230.1876.1
Unique NamemRNA_Ecto-sp13_S_contig12230.1876.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12230.1876.1 vs. uniprot
Match: D8LBZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ4_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.270e-75
Identity = 127/137 (92.70%), Postives = 133/137 (97.08%), Query Frame = 1 
Query:    1 MDRAAIFVDEDRLRDDGVGGAERARLAESLALEFRVRTAAMEAACETQLAKQRAAHKLEMAQQRVLLLEGMVPLAAHDEVVSKIAGDFSRRQEELRAEVEQRDKALSGASRTVRAISDRLAVLKRDVISLRTALSRY 411
            ++RAAIFV EDRLRDDGVGGAERARLAESLALEFRVRTAA+EAACETQLAKQRAAHKLEMAQQRVLLLEGMVPLAAHDEVVS IAGDFSRRQEELRAEVEQRDKAL+GASR VRA+SD LAVLKRDVISLRTAL+RY
Sbjct:    6 LNRAAIFVHEDRLRDDGVGGAERARLAESLALEFRVRTAAVEAACETQLAKQRAAHKLEMAQQRVLLLEGMVPLAAHDEVVSTIAGDFSRRQEELRAEVEQRDKALNGASRNVRAMSDSLAVLKRDVISLRTALNRY 142
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BLAST of mRNA_Ecto-sp13_S_contig12230.1876.1 vs. uniprot
Match: A0A6H5K265_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K265_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 9.030e-70
Identity = 126/135 (93.33%), Postives = 130/135 (96.30%), Query Frame = 1 
Query:    1 MDRAAIFVDEDRLRDDGVGGAERARLAESLALEFRVRTAAMEAACETQLAKQRAAHKLEMAQQRVLLLEGMVPLAAHDEVVSKIAGDFSRRQEELRAEVEQRDKALSGASRTVRAISDRLAVLKRDVISLRTALS 405
            +D AAIFVDEDRLRDDGVGGA+RARLAESLALEF VRTAAMEAACETQLAKQRAAHKLEMAQQRVLLLEGMVPLAAHDEVVS IAGDFSR+QEELRAEVEQRDKALSGASR VRA+SD LAVLKRDVISLRTALS
Sbjct:   53 LDHAAIFVDEDRLRDDGVGGAKRARLAESLALEFTVRTAAMEAACETQLAKQRAAHKLEMAQQRVLLLEGMVPLAAHDEVVSTIAGDFSRKQEELRAEVEQRDKALSGASRNVRAMSDSLAVLKRDVISLRTALS 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12230.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBZ4_ECTSI2.270e-7592.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K265_9PHAE9.030e-7093.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12230contigEcto-sp13_S_contig12230:394..1929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size414
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_003860.1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462650.4596195-CDS-Ecto-sp13_S_contig12230:393..6001681462650.4596195-CDS-Ecto-sp13_S_contig12230:393..600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12230 394..600 -
1681462650.4697778-CDS-Ecto-sp13_S_contig12230:1722..19291681462650.4697778-CDS-Ecto-sp13_S_contig12230:1722..1929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12230 1723..1929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12230.1876.1prot_Ecto-sp13_S_contig12230.1876.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12230 394..1929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12230.1876.1

>prot_Ecto-sp13_S_contig12230.1876.1 ID=prot_Ecto-sp13_S_contig12230.1876.1|Name=mRNA_Ecto-sp13_S_contig12230.1876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MDRAAIFVDEDRLRDDGVGGAERARLAESLALEFRVRTAAMEAACETQLA
KQRAAHKLEMAQQRVLLLEGMVPLAAHDEVVSKIAGDFSRRQEELRAEVE
QRDKALSGASRTVRAISDRLAVLKRDVISLRTALSRY*
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mRNA from alignment at Ecto-sp13_S_contig12230:394..1929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12230.1876.1 ID=mRNA_Ecto-sp13_S_contig12230.1876.1|Name=mRNA_Ecto-sp13_S_contig12230.1876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12230:394..1929- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGCGCCGCCATTTTCGTTGACGAGGATCGCTTGCGCGACGACGG
CGTTGGCGGGGCCGAGCGGGCACGTCTGGCCGAGAGCCTCGCATTGGAGT
TCAGAGTCCGCACGGCGGCGATGGAGGCTGCGTGCGAAACGCAGCTGGCC
AAGCAGCGGGCTGCGCACAAGCTGGAGATGGCCCAACAGCGTGTGCTGTT
GCTCGAGGTGTGTACTGCTGTTGTAGTCACAGCATCATGTTCTGGGGGAA
CTAGAGACAGGTTGGATAGGCTTTGCGGAGAATGGTCGCGTGCTACTCTC
GTTCGGGGTGTATTCGTTGTTGTTCTGTCGATTAACGTGACTGACTGGTG
TGGCGAGTGCTGCGGTTTTGCACCAAGATTCAGAGATCGACGTGCCACAC
GGTCTAACAGAGGCAAGTACGCTTGAGCTCAGGTTGTCGCTCGAATGTGC
AGGCAGCAGGCAGTACCGACATCATTCGTGTCATGACCATGAGCTGCTGT
TCACACGCGAGCATGTTTGCGAGATGGGGAGAGTCACTAACAGACCGTAA
AAACTATTCATGTTTACAGACAATGCCGCCGATGCATAGGTAGCATGAAA
GAACTTGTTGGAAGAGTTGTTATGTTGCAATTTTGTTTTACGAGCATTCC
AACAAGCTGTGACTCTGTTGCGACCTTGCGACTTGCGACAAACACGTAGA
CCTTGCGTCTGGCAGTTGAGATACGTCGCTTTGTGGCTTCGAGGCGTTTC
TTGTTTCATCGCCACGGCCGTTGAGCATACATGTAGGCTGCTTTACAGAA
TGTCAGTGTAGGATCCACCATGTACCGCTTGCCGCTTGTGTGCTTGTTGC
TTCACTCAATAACCGGCCGTTCCTATCTCTCTTTTCAATGCACTCATCTG
TCCAGTCTAGTCTAACAGTTGACGCGGTCGAATCCCGTGGTCACAGGCTA
AGAAATAAAATGGACTCGAAGGGCCCGCAAGTCAAAAGCACTCAACGACA
GATAGTCTAGAACCCACGCTCCCTCTGCACGCGATGCGAGGTAACCGTAG
ACTGGAAGTCAACATCACGGGTCAGAAGTTGCAGACCATATTTCTCACCG
GAAATATACTCGTGAACGGTGGCGTAACGATCCGATCCTACAGAAAGATC
GGGTAGGCGTGTTTCGGCATCGTCGGTTCCCTCCCTGTACCTACAATGCA
TCTTTCCTTCGCAAACCGCTTTCCGTGCATCTCAAAGTTTGCTTCTATTC
GAGAGCGCTTGCTCTCTCCCTCACCCAAAGAGAACGAAGAAAGCCGCCTC
CTTGTTACGCCACCGTCCCACGTTTGTAGGGCATGGTTCCGCTGGCCGCG
CACGACGAAGTGGTGTCGAAGATCGCGGGCGACTTCTCCCGCCGGCAGGA
GGAGCTGCGTGCCGAGGTGGAGCAACGGGACAAGGCTCTGAGTGGAGCCT
CCAGGACCGTCCGAGCCATATCGGACAGGCTTGCGGTGCTCAAGCGGGAC
GTGATCTCTCTCCGAACAGCCCTAAGCAGGTATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12230:394..1929-

>mRNA_Ecto-sp13_S_contig12230.1876.1 ID=mRNA_Ecto-sp13_S_contig12230.1876.1|Name=mRNA_Ecto-sp13_S_contig12230.1876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12230:394..1929- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGCGCCGCCATTTTCGTTGACGAGGATCGCTTGCGCGACGACGG
CGTTGGCGGGGCCGAGCGGGCACGTCTGGCCGAGAGCCTCGCATTGGAGT
TCAGAGTCCGCACGGCGGCGATGGAGGCTGCGTGCGAAACGCAGCTGGCC
AAGCAGCGGGCTGCGCACAAGCTGGAGATGGCCCAACAGCGTGTGCTGTT
GCTCGAGGGCATGGTTCCGCTGGCCGCGCACGACGAAGTGGTGTCGAAGA
TCGCGGGCGACTTCTCCCGCCGGCAGGAGGAGCTGCGTGCCGAGGTGGAG
CAACGGGACAAGGCTCTGAGTGGAGCCTCCAGGACCGTCCGAGCCATATC
GGACAGGCTTGCGGTGCTCAAGCGGGACGTGATCTCTCTCCGAACAGCCC
TAAGCAGGTATTAG
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