mRNA_Ecto-sp13_S_contig7561.18758.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7561.18758.1
Unique NamemRNA_Ecto-sp13_S_contig7561.18758.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7561.18758.1 vs. uniprot
Match: A0A6H5JHV6_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV6_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 7.440e-101
Identity = 159/176 (90.34%), Postives = 164/176 (93.18%), Query Frame = 3 
Query:  411 GVVIGGDRLIGVCRISSSELRGLGSSTVPADLKLRDPRGSWWGSSRGTIRIAVSLERLQANIIRAALPPSRASVLGVPEGVTRTASSEAKGEEAAPPTELSCKVLWNGHDFSSPSRWDKVFCMTVANSQLWLDIRPSPDLVNSAGLRESGFRKGPPPVDAIDGADALVPPPAGHST 938
            G VIGGDRLIGVCRISSSELR LGSSTVPADLKLRDPRG WWGSSRGTIRIAVSLERLQANIIRAALPP+RASVLGVPEGVTRTAS EAKGEE APPTELSCKVLWNGHDFSSPSRWDKVFCMT AN+QLWLDIR +PDLVNSAGLR +  RKGPPPVDA+DGAD LVPPP GHST
Sbjct:  163 GAVIGGDRLIGVCRISSSELRRLGSSTVPADLKLRDPRGLWWGSSRGTIRIAVSLERLQANIIRAALPPNRASVLGVPEGVTRTASGEAKGEETAPPTELSCKVLWNGHDFSSPSRWDKVFCMTAANNQLWLDIRAAPDLVNSAGLRPARSRKGPPPVDAVDGADVLVPPPEGHST 338
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7561.18758.1 vs. uniprot
Match: D7FSM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM2_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 9.420e-88
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 3 
Query:  390 GALRRVQGVVIGGDRLIGVCRISSSELRGLGSSTVPADLKLRDPRGSWWGSSRGTIRIAVSLERLQANIIRAALPPSRASVLGVPEGVTRTASSEAKGEEAAPPTELSCKVLWNGHDFSSPSRWDKVFCMTVANSQLWLDI 812
            GALRRVQG VIGGDRLIGVCRISSSELRGLGSSTVPADLKLRDPRGSWWGSSRGTIRIAVSLERLQANIIRAALPP RASVLGVPEGVTRTASSEAKGEEAAPPTELSCKVLWNGHDFSSPSRWDKVFCMT+AN+QLWLDI
Sbjct:   26 GALRRVQGAVIGGDRLIGVCRISSSELRGLGSSTVPADLKLRDPRGSWWGSSRGTIRIAVSLERLQANIIRAALPPKRASVLGVPEGVTRTASSEAKGEEAAPPTELSCKVLWNGHDFSSPSRWDKVFCMTLANNQLWLDI 166
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7561.18758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHV6_9PHAE7.440e-10190.34C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FSM2_ECTSI9.420e-8897.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7561contigEcto-sp13_S_contig7561:307..4406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size938
Hectar predicted targeting categoryother localisation
Exons6
Cds size363
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7561.18758.1prot_Ecto-sp13_S_contig7561.18758.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7561 307..1271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464025.3079188-CDS-Ecto-sp13_S_contig7561:306..5551681464025.3079188-CDS-Ecto-sp13_S_contig7561:306..555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7561 307..555 +
1681464025.3184443-CDS-Ecto-sp13_S_contig7561:636..7291681464025.3184443-CDS-Ecto-sp13_S_contig7561:636..729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7561 637..729 +
1681464025.329004-CDS-Ecto-sp13_S_contig7561:1250..12711681464025.329004-CDS-Ecto-sp13_S_contig7561:1250..1271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7561 1251..1271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464025.341199-UTR-Ecto-sp13_S_contig7561:1271..14311681464025.341199-UTR-Ecto-sp13_S_contig7561:1271..1431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7561 1272..1431 +
1681464025.3506563-UTR-Ecto-sp13_S_contig7561:2524..27201681464025.3506563-UTR-Ecto-sp13_S_contig7561:2524..2720Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7561 2525..2720 +
1681464025.3627927-UTR-Ecto-sp13_S_contig7561:3062..31571681464025.3627927-UTR-Ecto-sp13_S_contig7561:3062..3157Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7561 3063..3157 +
1681464025.3755648-UTR-Ecto-sp13_S_contig7561:4282..44061681464025.3755648-UTR-Ecto-sp13_S_contig7561:4282..4406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7561 4283..4406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7561.18758.1

>prot_Ecto-sp13_S_contig7561.18758.1 ID=prot_Ecto-sp13_S_contig7561.18758.1|Name=mRNA_Ecto-sp13_S_contig7561.18758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
ACSAEAATGEGGSAGCEAEGYPEGYRILDDSPIEARSSSSSSSRCGVCRC
RGGVDEVVLELWDEYVREDEKAGGGGGGGGGGGRGGRGVQAAVKAAAAAA
RRGDRALTSPTICLTTGCST*
back to top

mRNA from alignment at Ecto-sp13_S_contig7561:307..4406+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7561.18758.1 ID=mRNA_Ecto-sp13_S_contig7561.18758.1|Name=mRNA_Ecto-sp13_S_contig7561.18758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4100bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7561:307..4406+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTGCTCCGCAGAGGCCGCTACCGGCGAAGGGGGCTCCGCCGGCTGCGA
AGCGGAGGGGTACCCAGAGGGGTACAGAATATTGGACGACTCCCCCATTG
AGGCTCGCAGCAGCAGCAGCAGCAGCAGCAGGTGTGGGGTTTGCAGGTGT
AGGGGAGGCGTTGACGAGGTGGTGCTGGAGCTGTGGGACGAGTACGTACG
TGAAGACGAGAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
TAAAGGGGGGGGAAAAGCGGGGGGGGGGGGGGAAAAAGAGGGGGAAGAAC
AATAAAAAGACCCAANNNNNNNNNNGGGAGCGGGGTGGGCGGGGGGTTCA
AGCGGCGGTGAAAGCAGCGGCGGCAGCGGCAAGAAGAGGAGATCGAGCAT
TAACAAGCCCAACGATCTGTTTGGTGAGGGTGTGTCGACCGATTGTGTCA
AGCATTTGTAATATTGCGGGCGTGCTCGTTGGTTGGGTTGGGTTAGCTTT
GGTGTATGCGGTGGACGGCGATGTGAGAGGCGGTGGGATTGGTAGCAGAA
GAGAGGACGGCAGCATCGACAAAGGAGACCGATCAACTGCAGCCCGAACA
TCCGTTAGTTGTTGGGGTGCCATGGTGGGGTTGCTGTTGCTCTTTTTGTT
TCTGTTGTGTTCAGTGGCTTTTCGTCTTGTTGTTTTTCAGACCGAAACCT
TGGTCGTTACGGGAGCATGATAACCATGCGCGACAGCAGCAGCAGCAGCG
TTGCATTTATTTCCCATGTCTACTGCTTGGCATGTGGCATGCATCCTACT
TCAAAGCCAACAATAGTACTACGCCGCAACGTATAGATTCATCCGCATGT
TTTCCGGACGCCCCATCATGTCTGTCTACATTCTCACGTGGGTGGCATTC
GTCTTCACGAAACCCCTTCGCTCGCACAAAAAAAACTGCCCAAGACGACC
GGTTGTTCGACGTGAGCTTCGTGTCAAGGTGCTTCCAAAAGGGAGCGTTG
AGGCGGGTGCAGGGCGTGGTGATCGGAGGGGACAGATTGATCGGAGTGTG
CCGCATCTCGTCGAGCGAGCTGAGGGGGCTCGGGTCCTCTACGGTGCCGG
CGGACCTGAAGCTGAGGGACCCCAGGTAGGTCGGTCGCGCTGCTGCTGCT
GTCACCGCTGCTGGGGCTAGTCCTTTTCAATGGTGAATTGCTGCGGGATG
ATATGGTTGTTTCCATGACTGCTGCTGCTGCTGTTGTTCGATAGTGTTCG
GTGTTGCGTGTTGGTATGGCTGTGACCGCCGCCGCCCCCGCTGCTGCTCC
TTCAGTATTGAGGTGTTGCGTGTTGCTGTGGTAGATATCGCTCCTGCTAG
ATTTTGCTCGGGTGGTGCTGCGGTTGTTGTTCAGCTCTTGGGTGATAATT
GTTGTTGTGTGGATGAGAATTGCTGTTGCTGTTGTTGTCCAGCTAGCCCA
CCGTTCCCAAAAGATCTCTGTTCGGATTACAGGACCAGGAGCAAAGGGAG
ACGCACTGCTGTGTTGTTGTTCGGCACTTTGTTTGCCATACTTCGCGTAT
AGTAATTTGCACAATTGGTGTTCTTCGTTCAGTTAGTCCTTGCGGGGCGT
GAAACTCAGAGACTCAACGTAGGAGGGGCCCCGTGCAAGCGTAAGCGTGT
TGCCGTGCCCGCTTTTGCCGTTGATGTTATCGTAGAGGAGACAGCTAACG
CCACGCCTTCTTCTGGAGAGGGGGCCCGTGGCGTTGCCACCGCCGGGGCA
CCATGCCCACAACGCTCTCGAGACCCTCTGAGCGCAAAATTGTTCTTGTT
TTCTCGTATGCGCACACTCCAGTACGAAACCGTTACAACTCGTCCCTGCG
TACCCCCCCTTCTCGCCCTGAAACCTCTCTCTCTCTGTCTCTCTCTCACT
CTCGCTCATTCATGTAGGGGGCTGGCTCGTGGTGGAGCAGCAGCTTCTCT
GCGTACCTACCCACGTACCCACCCTTTGTCTCATCCCTCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTCTTCTACCCTGCCCTCGTGGCGGGGGGC
GGCGGGGGGGGGGCCGCGGGGGGCCAGCCAGCGGAGCGGANNNNNNNNNN
CCTCTGGGCGCAAAATTGTTCTTGTTTTCTCGCATGCGCACACCCCAGTA
CGAAACCGTTACACCTCGCCCCCCCGTCCCCCCCCTCCTCTCTCGTTTAA
ACCCCTGTCCGTGTTCAGGGGCTCGTGGTGGGGCAGCAGCAGGGGTACCA
TCCGCATCGCCGTGAGCCTGGAAAGGCTGCAGGCGAACATAATCCGAGCC
GCGTTGCCCCCGAGCAGAGCATCGGTCCTGGGGGTACCGGAGGGGGTGAC
GCGGACGGCGTCCAGTGAGGCGAAGGGGGAGGAGGCCGCCCCTCCCACGG
AGCTTTCCTGCAAGGTGCTTGGCCCTATTTGTGTTGTAGAGTTCACTGCT
GTTATTTGTTGTTGTTGTTCGTGGTGGTTGTGGAGGTCGTGGATGTGGTG
GTGGTGCTGGTGGTGGTGCTGCTGTTGTCTTCACGTTGAGAACCGCACGA
AGCTCGGCCAAGATAAAGAGGGCTCGCGTATCAACCTCACCAGCACTGTC
GGAGTGCTCTCACCTTGAATTGCTTGGAATTTCTGCACCGAGTGTGGGAT
GTGTTTTGATAATTTGGCGACGTCCAGGTGTCGTTCTTTTGCTTCGTTTT
TGAAAGCTTGTGTCTCAGAAAAAATACTGTAAATATCTGGCACTTCTTTT
CTTCAGGTTCTGTGGAACGGGCACGACTTTTCTAGCCCCAGCCGGTGGGA
CAAGGTGTTCTGCATGACGGTCGCCAACAGCCAGTTGTGGCTGGACATCA
GGTGCTCGCTGAATCCCGCCTGGTCTGTGCGGTGGTGTGGCCTCCCACCG
CCTGACCGTAGACTGCTCAACTTCGCGCAGAAATTTTTGACCGCTACATT
GTCCATACTTAGGTCGACAATGGCCGCCGTTTCACAGACCGTATGCGTAG
AGGTACCTTTTTTTTATCAGGAATTTTCTCTCCTTGGTTTTGGCACCTAT
ACGCTCGTCCCAGTGGCGCGGGAAATATTAGCTTATTTCTGGGATGTAGC
GTGATTTTTTTATGGTTGAATGTGTGAGCCTGGCCTAACTTAGGCTGACT
CCTATGGCAACCGAAAGTTGGCCCGACGGATTATTTTGGAATGGCATACC
CCCACCCCCCGGATTTGCCACGGATCCGAACAAGAGACAAACCTCTCACT
ACATCACAACAGAGTTCTCCCTCCATGATGGTCGGATCGTCACCAAACCT
TGAAGGCTGTACGCACCACACATGTAGGCGTCTTTGAAGCTAGTGGTAAC
TGCTGTTGGGTCTGTTTGTGCTGATCAATGTCAATCCATGTGAGCAAAAG
TAAGAATCCGTGTGGAGAATCCGTAGGATATGCTACACGAAAAATAGGTA
TGGAGGGAGAACTCTGTGGTGATGTGGTGAGAGGTCTGTCTCTTGCTCAA
ATCCGTGGCAAATCCGGGGGGCAGGGGTATGCCAGTCCAAAAAAATCCGT
CGGTCTAAGTTTCGGTTGCTATGGGAGTCAGCCTTGGTTTCCTCGTCGTC
CGCAGTCGATCCGCTCTGACGTTTACGGGACCCCCTCTCGCATTAACGAG
ACCCCTCTCTTCAGAGTCTTGATTACGCCTAGCACAACGTAGTATTGTTG
TATCCTACGTTCTTGATCCCCTCTTGGATTCACGGGACCCCTGTTGAATT
TGCGGACCCCTTCTAACGGGAACCTCGCTCGCGGGACCCCCCATCGCATG
CACGGGACCCCTCTCTTCAGATTCTTGAAATGGCCTTGCACAAACTAAAT
TCCTGCATCCTACGTTCTCGATCCCCTCTTGAATTCACGGGACCCCTGTT
GAAATTTCGGGACCCCTTTTAACGGGGACCCCCTCTCGCGGGACCCCCTC
TCGCATGCACGGGACCCCGTCTTCAGACCCTCTCCAGACCTGGTCAACTC
CGCGGGACTACGCGAATCCGGCTTCCGGAAAGGACCACCCCCGGTGGATG
CCATAGACGGCGCGGATGCCCTTGTCCCACCCCCTGCGGGCCACAGCACT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7561:307..4406+

>mRNA_Ecto-sp13_S_contig7561.18758.1 ID=mRNA_Ecto-sp13_S_contig7561.18758.1|Name=mRNA_Ecto-sp13_S_contig7561.18758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7561:307..4406+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTGCTCCGCAGAGGCCGCTACCGGCGAAGGGGGCTCCGCCGGCTGCGA
AGCGGAGGGGTACCCAGAGGGGTACAGAATATTGGACGACTCCCCCATTG
AGGCTCGCAGCAGCAGCAGCAGCAGCAGCAGGTGTGGGGTTTGCAGGTGT
AGGGGAGGCGTTGACGAGGTGGTGCTGGAGCTGTGGGACGAGTACGTACG
TGAAGACGAGAAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
GGGGTGGGCGGGGGGTTCAAGCGGCGGTGAAAGCAGCGGCGGCAGCGGCA
AGAAGAGGAGATCGAGCATTAACAAGCCCAACGATCTGTTTGACGACCGG
TTGTTCGACGTGA
back to top