mRNA_Ecto-sp13_S_contig75594.18753.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75594.18753.1
Unique NamemRNA_Ecto-sp13_S_contig75594.18753.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: D8LFW4_ECTSI (Uracil-DNA glycosylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFW4_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.070e-51
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGYACGTTA 270
            +VVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNM+KEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQG+   T A
Sbjct:  112 KVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMVKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGWEKFTDA 201
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: A0A836CBN7_9STRA (Uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 7.920e-32
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGY 252
            +VVILGQDPYH PGQAHGL+FSV +GV QPPSLRN++KEA +CCG  PTK+G L  W  QGVLLLNTVL+VE+    SH  +G+
Sbjct:   58 RVVILGQDPYHGPGQAHGLSFSVAQGVAQPPSLRNIVKEATACCGTKPTKNGCLTPWAVQGVLLLNTVLTVEKGAPLSHHKKGW 141
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: A0A7S2P901_9STRA (Uracil-DNA glycosylase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P901_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.740e-31
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGY 252
            +VVI+GQDPYHQPGQ HGLAFSV KGV  PPSLRN+ KEA+    I P   GNL+ W  QGVLLLNTVL+V R +ANSH   G+
Sbjct:   22 RVVIVGQDPYHQPGQGHGLAFSVRKGVKTPPSLRNIFKEAMEDVSIDPPTHGNLEGWARQGVLLLNTVLTVRRGEANSHAKMGW 105
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: A0A6G0XWG6_9STRA (Uracil-DNA glycosylase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWG6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.060e-30
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGYACGTTA 270
            +VVI+GQDPYH PGQAHGL FSV +GV  PPSL+N+ KEA S  GI     G+L SWC+QGVLLLNTVL+V  S+ANSHK QG+   T A
Sbjct:  110 KVVIIGQDPYHGPGQAHGLCFSVQRGVPPPPSLKNIYKEACSDVGIPKPSHGSLLSWCNQGVLLLNTVLTVRASEANSHKKQGWETFTDA 199
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: B8C427_THAPS (Uracil-DNA glycosylase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C427_THAPS)

HSP 1 Score: 117 bits (292), Expect = 2.610e-30
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    7 VILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGY 252
            VI+GQDPYHQPGQ HGLAFSV KGV  PPSLRN+ KEA+   GI+P + GNL+ W  QGVLLLNTVL+V R +ANSH   G+
Sbjct:  106 VIVGQDPYHQPGQGHGLAFSVRKGVSIPPSLRNIFKEAIDDVGISPPEHGNLEGWARQGVLLLNTVLTVRRGEANSHAKLGW 187
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: A0A518E2E3_9BACT (Uracil-DNA glycosylase n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518E2E3_9BACT)

HSP 1 Score: 115 bits (287), Expect = 4.800e-30
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGY 252
            QVV+LGQDPYH PGQAHGL FSV +GV  PPSLRNMLKE  +  G +    G L +W  QGVLLLNTVL+V R +ANSHKNQG+
Sbjct:   56 QVVLLGQDPYHGPGQAHGLCFSVKRGVAAPPSLRNMLKELAADQGCSIPTHGELTAWARQGVLLLNTVLTVRRGEANSHKNQGW 139
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: W9UYG7_9GAMM (Uracil-DNA glycosylase n=3 Tax=Nitrincola TaxID=267849 RepID=W9UYG7_9GAMM)

HSP 1 Score: 115 bits (287), Expect = 5.170e-30
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGYACGT 264
            +VVILGQDPYHQPGQAHGL FSV  GV  PPSL+N+ KE  +  G+ P   G LD+W  QGVLLLN+VL+VE SKAN+H+ QG+   T
Sbjct:   59 KVVILGQDPYHQPGQAHGLCFSVRPGVRVPPSLQNIYKELQADLGVRPVSHGYLDTWAEQGVLLLNSVLTVEHSKANAHQGQGWEAFT 146
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: A0A6H9GUI4_9SPHN (Uracil-DNA glycosylase n=5 Tax=Novosphingobium TaxID=165696 RepID=A0A6H9GUI4_9SPHN)

HSP 1 Score: 114 bits (286), Expect = 7.670e-30
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGYACGTTA 270
            +VVILGQDPYH PGQAHGL+FSV +GV  PPSL N+ KE  S CG+TP   GNL+ W  QGVLLLN  L+VE ++A SH+N+G+   T A
Sbjct:   64 RVVILGQDPYHGPGQAHGLSFSVPEGVKVPPSLVNIYKELASDCGVTPPGHGNLEHWARQGVLLLNNALTVEEAQAGSHQNKGWEAITDA 153
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: A0A3R6V3X4_9STRA (Uracil-DNA glycosylase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6V3X4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.680e-30
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGYACGTTA 270
            +VVI+GQDPYH PGQAHGL FSV +GV  PPSL+N+ KEA S  GI   K G+L SWC+QGVL+LN VL+V  ++ANSHK QG+   T A
Sbjct:   21 KVVIIGQDPYHGPGQAHGLCFSVARGVPPPPSLKNIYKEANSDVGIPIPKHGSLLSWCNQGVLMLNAVLTVRATEANSHKKQGWETFTDA 110
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BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Match: A0A3N4GVD6_9LACT (Uracil-DNA glycosylase n=1 Tax=Aerococcus sp. SJQ22 TaxID=2487350 RepID=A0A3N4GVD6_9LACT)

HSP 1 Score: 114 bits (285), Expect = 9.600e-30
Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTKSGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGYACGTTA 270
            +VVILGQDPYHQPGQAHGL+FSV KGV  PPSLRN+ KE  +   I P   GNL SW  QGVLLLN VL+V  S+AN+HK +G+   T A
Sbjct:   60 KVVILGQDPYHQPGQAHGLSFSVQKGVKIPPSLRNIYKELQNDLAIEPANHGNLTSWAEQGVLLLNAVLTVPDSQANAHKGKGWEVLTDA 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75594.18753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFW4_ECTSI2.070e-5192.22Uracil-DNA glycosylase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A836CBN7_9STRA7.920e-3266.67Uracil-DNA glycosylase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2P901_9STRA3.740e-3165.48Uracil-DNA glycosylase (Fragment) n=1 Tax=Skeleton... [more]
A0A6G0XWG6_9STRA2.060e-3064.44Uracil-DNA glycosylase n=1 Tax=Aphanomyces euteich... [more]
B8C427_THAPS2.610e-3067.07Uracil-DNA glycosylase n=1 Tax=Thalassiosira pseud... [more]
A0A518E2E3_9BACT4.800e-3066.67Uracil-DNA glycosylase n=1 Tax=Lignipirellula crem... [more]
W9UYG7_9GAMM5.170e-3062.50Uracil-DNA glycosylase n=3 Tax=Nitrincola TaxID=26... [more]
A0A6H9GUI4_9SPHN7.670e-3061.11Uracil-DNA glycosylase n=5 Tax=Novosphingobium Tax... [more]
A0A3R6V3X4_9STRA7.680e-3062.22Uracil-DNA glycosylase (Fragment) n=1 Tax=Aphanomy... [more]
A0A3N4GVD6_9LACT9.600e-3063.33Uracil-DNA glycosylase n=1 Tax=Aerococcus sp. SJQ2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75594contigEcto-sp13_S_contig75594:40..634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score172.2
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D8LFW4
Preferred nameUNG1
Model size270
KEGG rclassRC00040,RC00367
KEGG koko:K01946,ko:K03648,ko:K11400
KEGG ReactionR00742
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko03410,ko04152,ko04910,ko04920,ko04922,ko04931,ko05340,map00061,map00254,map00620,map00640,map01100,map01110,map03410,map04152,map04910,map04920,map04922,map04931,map05340
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0004844,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006310,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009893,GO:0009987,GO:0010604,GO:0010941,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042981,GO:0043021,GO:0043024,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045008,GO:0045191,GO:0045830,GO:0045911,GO:0045935,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051716,GO:0055086,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0080090,GO:0090304,GO:0097159,GO:0097506,GO:0097510,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:2000026
Exons2
EggNOG free text desc.base-excision repair, AP site formation via deaminated base removal
EggNOG OGsCOG0692@1,KOG2994@2759
EC2.1.3.15,3.2.2.27,6.3.4.14,6.4.1.2
Cds size270
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464024.6030827-CDS-Ecto-sp13_S_contig75594:39..1861681464024.6030827-CDS-Ecto-sp13_S_contig75594:39..186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75594 40..186 -
1681464024.6169567-CDS-Ecto-sp13_S_contig75594:511..6341681464024.6169567-CDS-Ecto-sp13_S_contig75594:511..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75594 512..634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75594.18753.1prot_Ecto-sp13_S_contig75594.18753.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75594 40..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75594.18753.1

>prot_Ecto-sp13_S_contig75594.18753.1 ID=prot_Ecto-sp13_S_contig75594.18753.1|Name=mRNA_Ecto-sp13_S_contig75594.18753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
QVVILGQDPYHQPGQAHGLAFSVMKGVMQPPSLRNMLKEAVSCCGITPTK
SGNLDSWCSQGVLLLNTVLSVERSKANSHKNQGYACGTTA
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mRNA from alignment at Ecto-sp13_S_contig75594:40..634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75594.18753.1 ID=mRNA_Ecto-sp13_S_contig75594.18753.1|Name=mRNA_Ecto-sp13_S_contig75594.18753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=595bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75594:40..634- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTAATCTTGGGGCAGGACCCTTACCACCAGCCCGGGCAGGCGCA
CGGCCTGGCTTTCTCGGTGATGAAGGGGGTCATGCAACCGCCAAGCCTGC
GGAACATGCTCAAGGAGGCCGTGGTGAGTAAACTACAAAGCTGAAGTTGA
AGTAGAGGCTTGGGTTGCGTTTGAATTTCGACGTCCGTACTGTGGTAGAG
TTGCTGCGTGTTTTCCAACGAGCAAAACACACACATGTTTTTGGACGATT
TTGGAGAGACTCCTGACGTGGCGAGCTGCTGCCGACCGCGTGCTTGCGCA
TGTGAGTGGAGCTGAAAGGGAAATCCGAGAGCCGGAATGTGCTGCGGTGA
AGGTGGCTGTTCTAGATCGATGTTCCCTTTCTTCAGCGACTGAGTGTAAA
ACAAACACACCCACACCCTTCGATTCCGTTTTTGTGTTGTCCGCTTAGAG
CTGCTGCGGCATCACGCCCACCAAGTCCGGGAACCTGGACAGCTGGTGCA
GCCAGGGAGTCTTGCTGCTCAACACAGTTCTGAGCGTCGAGAGGTCCAAG
GCTAACTCGCACAAGAACCAAGGGTACGCTTGTGGAACAACTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75594:40..634-

>mRNA_Ecto-sp13_S_contig75594.18753.1 ID=mRNA_Ecto-sp13_S_contig75594.18753.1|Name=mRNA_Ecto-sp13_S_contig75594.18753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75594:40..634- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTAATCTTGGGGCAGGACCCTTACCACCAGCCCGGGCAGGCGCA
CGGCCTGGCTTTCTCGGTGATGAAGGGGGTCATGCAACCGCCAAGCCTGC
GGAACATGCTCAAGGAGGCCGTGAGCTGCTGCGGCATCACGCCCACCAAG
TCCGGGAACCTGGACAGCTGGTGCAGCCAGGGAGTCTTGCTGCTCAACAC
AGTTCTGAGCGTCGAGAGGTCCAAGGCTAACTCGCACAAGAACCAAGGGT
ACGCTTGTGGAACAACTGCT
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