mRNA_Ecto-sp13_S_contig7556.18750.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7556.18750.1
Unique NamemRNA_Ecto-sp13_S_contig7556.18750.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: D8LD71_ECTSI (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD71_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.800e-39
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEG AKHLA+DDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSD+LHDFTPTHFDAVVSMCG
Sbjct:   70 CRSQMAEGGAKHLARDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDYLHDFTPTHFDAVVSMCG 138
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BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: UPI00056045E3 (arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00056045E3)

HSP 1 Score: 92.0 bits (227), Expect = 2.330e-22
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEG+A+ L KD +E+ SSGLE SRVHPTA  VM E+G+DI++ TSD L DF    +DAV+SMCG
Sbjct:   13 CRSQMAEGFARALGKDKIEVTSSGLEASRVHPTAIEVMSEIGIDISNQTSDALSDFNAKDYDAVISMCG 81
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BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: K9XPN7_STAC7 (Protein tyrosine phosphatase n=2 Tax=Stanieria TaxID=102115 RepID=K9XPN7_STAC7)

HSP 1 Score: 91.7 bits (226), Expect = 3.300e-22
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEGWAK L +  +E+ SSGLE SRVHPTA  VM EVG+DI+S TSD L +F    +DAV+SMCG
Sbjct:   13 CRSQMAEGWAKTLGEGKIEVTSSGLEASRVHPTAIEVMSEVGIDISSQTSDPLSNFNADDYDAVISMCG 81
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BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: UPI00056BA52C (arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00056BA52C)

HSP 1 Score: 91.3 bits (225), Expect = 4.680e-22
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEGWAK L +  +++ SSGLE SRVHPTA  VM E+G+DI++ TSD L DF    +DAV+SMCG
Sbjct:   13 CRSQMAEGWAKTLGEGKIKVTSSGLEASRVHPTAKEVMSEIGIDISNQTSDALSDFNARDYDAVISMCG 81
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BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: A0A0M1JS80_9CYAN (ArsC family transcriptional regulator n=2 Tax=Planktothricoides TaxID=132607 RepID=A0A0M1JS80_9CYAN)

HSP 1 Score: 91.3 bits (225), Expect = 4.810e-22
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEG+AKHL K  + + SSGLE SRVHPTA  VM E+G+DIT  TS+ L +F P ++DAV+S+CG
Sbjct:   13 CRSQMAEGFAKHLGKGKITVTSSGLESSRVHPTAIRVMSEIGIDITDQTSNPLSEFQPENYDAVISLCG 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: A0A7C9PUZ9_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9PUZ9_9CYAN)

HSP 1 Score: 91.3 bits (225), Expect = 5.200e-22
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEG+A+ L +D +E+ SSGLE S+VHPTA  VM E+G+DI++ TSD L DF P+ +D V+SMCG
Sbjct:   14 CRSQMAEGFARTLGEDKIEVSSSGLEASKVHPTAIQVMSEIGIDISNQTSDDLRDFNPSDYDVVISMCG 82
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BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: L8LHA5_9CHRO (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Gloeocapsa sp. PCC 73106 TaxID=102232 RepID=L8LHA5_9CHRO)

HSP 1 Score: 92.8 bits (229), Expect = 2.850e-21
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEG+AK L KD +E+ SSGLE SRVHPTA  VMQE+G+DI+  +S  ++DFT T +DAV+S+CG
Sbjct:   13 CRSQMAEGFAKTLGKDKIEVTSSGLEASRVHPTAIEVMQEIGIDISDQSSKPINDFTATDYDAVISLCG 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: A0A2T1CN74_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CN74_9CYAN)

HSP 1 Score: 88.6 bits (218), Expect = 5.390e-21
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEG+AK L KD +E+ SSGLE SRVHPTA  VM E+G+DI++ TSD L  F    +DAV+S+CG
Sbjct:   13 CRSQMAEGFAKTLGKDKIEVTSSGLEASRVHPTANKVMSEIGIDISNQTSDPLSAFNADDYDAVISLCG 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: A3IM52_9CHRO (Arsenate reductase n=1 Tax=Crocosphaera chwakensis CCY0110 TaxID=391612 RepID=A3IM52_9CHRO)

HSP 1 Score: 88.2 bits (217), Expect = 7.840e-21
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEG+AK L K+ +E+ SSGLE SRVHPTA  VM+E+G++IT  TSD L +F   ++DAV+S+CG
Sbjct:   13 CRSQMAEGFAKTLGKNKIEVTSSGLEASRVHPTAIKVMEEIGINITDQTSDPLSEFDADNYDAVISLCG 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Match: K9TJ35_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=2 Tax=Oscillatoriaceae TaxID=1892254 RepID=K9TJ35_9CYAN)

HSP 1 Score: 88.2 bits (217), Expect = 8.940e-21
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    4 CSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHTSDFLHDFTPTHFDAVVSMCG 210
            C  QMAEG+AK L +  +E+ SSGLE SRVHPTA  VM+E+GVDIT+ TSD L DF    +D V+S+CG
Sbjct:   14 CRSQMAEGFAKTLGEGKIEVTSSGLESSRVHPTAVEVMEEIGVDITNQTSDPLSDFQAEDYDVVISLCG 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7556.18750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD71_ECTSI1.800e-3992.75Arsenate reductase, glutathione/glutaredoxin type ... [more]
UPI00056045E32.330e-2260.87arsenate reductase, glutathione/glutaredoxin type ... [more]
K9XPN7_STAC73.300e-2262.32Protein tyrosine phosphatase n=2 Tax=Stanieria Tax... [more]
UPI00056BA52C4.680e-2259.42arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A0M1JS80_9CYAN4.810e-2259.42ArsC family transcriptional regulator n=2 Tax=Plan... [more]
A0A7C9PUZ9_9CYAN5.200e-2257.97Arsenate reductase, glutathione/glutaredoxin type ... [more]
L8LHA5_9CHRO2.850e-2160.87Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A2T1CN74_9CYAN5.390e-2159.42Arsenate reductase, glutathione/glutaredoxin type ... [more]
A3IM52_9CHRO7.840e-2157.97Arsenate reductase n=1 Tax=Crocosphaera chwakensis... [more]
K9TJ35_9CYAN8.940e-2159.42Arsenate reductase, glutathione/glutaredoxin type ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7556contigEcto-sp13_S_contig7556:1979..2609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score137.5
Seed ortholog evalue2.4e-30
Seed eggNOG ortholog2880.D8LD71
Model size213
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Low molecular weight phosphatase family
EggNOG OGs2SAW9@2759,COG0394@1
Ec32 ortholog descriptionPhosphotyrosine protein phosphatase I superfamily
Ec32 orthologEc-05_001560.1
Cds size213
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464024.3547661-CDS-Ecto-sp13_S_contig7556:1978..20831681464024.3547661-CDS-Ecto-sp13_S_contig7556:1978..2083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7556 1979..2083 -
1681464024.3850145-CDS-Ecto-sp13_S_contig7556:2501..26091681464024.3850145-CDS-Ecto-sp13_S_contig7556:2501..2609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7556 2502..2609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7556.18750.1prot_Ecto-sp13_S_contig7556.18750.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7556 1979..2609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7556.18750.1

>prot_Ecto-sp13_S_contig7556.18750.1 ID=prot_Ecto-sp13_S_contig7556.18750.1|Name=mRNA_Ecto-sp13_S_contig7556.18750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MCSHQMAEGWAKHLAKDDLEIWSSGLEGSRVHPTATAVMQEVGVDITSHT
SDFLHDFTPTHFDAVVSMCG*
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mRNA from alignment at Ecto-sp13_S_contig7556:1979..2609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7556.18750.1 ID=mRNA_Ecto-sp13_S_contig7556.18750.1|Name=mRNA_Ecto-sp13_S_contig7556.18750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7556:1979..2609- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTCTCACCAGATGGCCGAGGGGTGGGCGAAGCATCTCGCCAAGGA
CGACCTCGAGATCTGGAGCTCGGGGCTGGAGGGGTCCAGGGTGCACCCGA
CGGCCACGGTGAGCGAGCGAGCGAGCGAGCGGTGGGTGGTGATGCACGTG
GTCAGCAAGACGTGTGTGTGTGTTTTGTAGTTTTGGCTTTGACCGCGCTA
ACCGGCTGACCAATGAAGAGACATCAGTCTCAGTTCGGTTGAAAACACAA
AACACTTCTAAATGCCATAAACTGGGACCCCGTGAGGGGGTGGCATGAAG
AAGACTACCCTATTCTCCGGATTAAAGACAGAAACGGTAGCAACAGAAGA
AAATTGTTTGTGTTTTGTGTGTTTTTGTTGAAATGGACCGCGCTTACCGA
CAGACCAATGAAAAGACGTCAGTCTCAGTGCGTTTAAAAACGCAAACTTG
TGAGTCTGCATCGGCTGTGCCTTCACAAACTTGCTAACATTTGTTTCGCT
GCTTGCTTTCCCGTAACATCTCGCAGGCGGTGATGCAAGAAGTCGGCGTT
GACATCACCAGCCACACCTCCGACTTCCTCCACGACTTCACGCCGACCCA
CTTCGATGCGGTCGTGTCCATGTGTGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7556:1979..2609-

>mRNA_Ecto-sp13_S_contig7556.18750.1 ID=mRNA_Ecto-sp13_S_contig7556.18750.1|Name=mRNA_Ecto-sp13_S_contig7556.18750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7556:1979..2609- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTCTCACCAGATGGCCGAGGGGTGGGCGAAGCATCTCGCCAAGGA
CGACCTCGAGATCTGGAGCTCGGGGCTGGAGGGGTCCAGGGTGCACCCGA
CGGCCACGGCGGTGATGCAAGAAGTCGGCGTTGACATCACCAGCCACACC
TCCGACTTCCTCCACGACTTCACGCCGACCCACTTCGATGCGGTCGTGTC
CATGTGTGGGTGA
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