mRNA_Ecto-sp13_S_contig7551.18743.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: D8LC05_ECTSI (Actin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC05_ECTSI) HSP 1 Score: 178 bits (451), Expect = 1.420e-51 Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 1
Query: 4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYNVR 282
+LIFNPDAGGKDFAARATDGGLASMVM+SISMCDKDINPDLLGSVVVAGGTTMM GFVERLQ+DLDRVSPPGA MMASVIPHPTSHEPGYN +
Sbjct: 261 ELIFNPDAGGKDFAARATDGGLASMVMQSISMCDKDINPDLLGSVVVAGGTTMMAGFVERLQDDLDRVSPPGAPMMASVIPHPTSHEPGYNAQ 353
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A7S2BD76_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BD76_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.610e-17 Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 64 GLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
GL ++V ++ISMCD+D+ PDLL SVV+AGGTTM+PGF ERL+ +L R+S PG S +V+P E GYN
Sbjct: 7 GLPALVQKAISMCDRDLQPDLLQSVVLAGGTTMLPGFSERLKHELVRISAPGTSF--NVVPDNKGSERGYN 75
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A662X996_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X996_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 8.560e-15 Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
+++F P G D +R T G L SI+MCDKD+ DL G+VV+AGG+TM+PGF R QE+L V+ S +V+P P E GYN
Sbjct: 242 EVLFKPQELGDDHPSRPTQG-LHECAAASIAMCDKDLQKDLFGAVVLAGGSTMLPGFSRRFQEELQAVTQRPGSGSVNVVPDPVVRERGYN 331
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A7S2S4R5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4R5_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.310e-14 Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 46 ARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
A D GLA++V +SI MCDKD+ PDL SVV++GG+TM PGF ERL+ DL+ V PG SV+P E GY+
Sbjct: 264 AAQPDNGLAALVQKSILMCDKDLQPDLFNSVVLSGGSTMFPGFSERLRRDLESVVMPGTEF--SVVPDSRQAERGYS 338
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A3R7H0W0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H0W0_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.360e-13 Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRV-SPPGASMMASVIPHPTSHEPGYN 276
+++F P G + R + GL SI+MCDKD+ DLL +VV+AGGTTM+PGF +R Q++L+ V G+S A+VIP P E GYN
Sbjct: 308 EVLFKPQELGDEHPLRP-EKGLHECAAASIAMCDKDLQSDLLNAVVLAGGTTMLPGFSKRFQDELNAVLQHTGSSNTANVIPDPVVRERGYN 398
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: D0MWD8_PHYIT (Actin-like protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MWD8_PHYIT) HSP 1 Score: 75.9 bits (185), Expect = 4.370e-13 Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 1
Query: 4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
+++F P G D R D GL V S++MCDKD+ DLL +VV+AGGTTM+PG R QE+L V P A +V+P P E GYN
Sbjct: 279 EILFKPHELGDDHPLRP-DKGLHECVAASLAMCDKDLQSDLLNAVVLAGGTTMLPGTSRRFQEELQSVLPGSA---LNVVPDPIIRERGYN 365
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A2P4YL38_9STRA (Actin-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YL38_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 4.750e-13 Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRV-SPPGASMMASVIPHPTSHEPGYN 276
+++F P G D D GL V SI+MCDKD+ DLL +VV+AGGTTM+PGF R +++L V G S +VIP P E GYN
Sbjct: 175 EVLFKPQELG-DEHPMCPDKGLHECVAASIAMCDKDLQSDLLNAVVLAGGTTMLPGFSRRFRDELQSVLQRSGGSSTVNVIPDPVVRERGYN 265
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: H3G988_PHYRM (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3G988_PHYRM) HSP 1 Score: 72.4 bits (176), Expect = 7.050e-12 Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDR-VSPPGASMMASVIPHPTSHEPGYN 276
+++F P G + D GL SI+MCDKD+ DLL +VV+AGGTTM+PGF +R Q++L + G + +VIP P E GYN
Sbjct: 263 EILFKPQELGDEHPMHP-DKGLHECAAASIAMCDKDLQSDLLSAVVLAGGTTMLPGFSQRFQDELQAALQRTGGNGNVNVIPDPVVRERGYN 353
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: K3WHZ1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHZ1_GLOUD) HSP 1 Score: 71.2 bits (173), Expect = 1.900e-11 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 49 RATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMA-SVIPHPTSHEPGYNVR 282
++T GL V SI+MCDKD+ DL +VV+AGGTTM+PGF +R QE++ GA+ ++P P E GYN +
Sbjct: 304 QSTTKGLHEYVAESIAMCDKDLQKDLCAAVVLAGGTTMLPGFSKRFQEEIQMTKSLGAATRTMGIVPDPYVRERGYNAQ 382
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Match: A0A8K1FBD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBD4_PYTOL) HSP 1 Score: 69.7 bits (169), Expect = 6.420e-11 Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1
Query: 4 QLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGGTTMMPGFVERLQEDLDRVSPPGASMMASVIPHPTSHEPGYN 276
+++F P G++ + T G L +V SISMCDKD+ DL +V++AGGTTMMPGF +R QE+L ++ V+P E GYN
Sbjct: 280 EILFKPQDLGEEHPMKPTKG-LHELVAESISMCDKDLQKDLYDAVILAGGTTMMPGFSKRFQEELMMLT---KKPRLCVVPDAHVRERGYN 366 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7551.18743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7551.18743.1 >prot_Ecto-sp13_S_contig7551.18743.1 ID=prot_Ecto-sp13_S_contig7551.18743.1|Name=mRNA_Ecto-sp13_S_contig7551.18743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp MQLIFNPDAGGKDFAARATDGGLASMVMRSISMCDKDINPDLLGSVVVAGback to top mRNA from alignment at Ecto-sp13_S_contig7551:1046..2275+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7551.18743.1 ID=mRNA_Ecto-sp13_S_contig7551.18743.1|Name=mRNA_Ecto-sp13_S_contig7551.18743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1230bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7551:1046..2275+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7551:1046..2275+ >mRNA_Ecto-sp13_S_contig7551.18743.1 ID=mRNA_Ecto-sp13_S_contig7551.18743.1|Name=mRNA_Ecto-sp13_S_contig7551.18743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7551:1046..2275+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |