mRNA_Ecto-sp13_S_contig7551.18744.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7551.18744.1
Unique NamemRNA_Ecto-sp13_S_contig7551.18744.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7551.18744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7551contigEcto-sp13_S_contig7551:2583..3185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size605
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.880365-UTR-Ecto-sp13_S_contig7551:2582..27141681464023.880365-UTR-Ecto-sp13_S_contig7551:2582..2714Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7551 2583..2714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.9085543-CDS-Ecto-sp13_S_contig7551:2714..31851681464023.9085543-CDS-Ecto-sp13_S_contig7551:2714..3185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7551 2715..3185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7551.18744.1prot_Ecto-sp13_S_contig7551.18744.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7551 2715..3185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7551.18744.1

>prot_Ecto-sp13_S_contig7551.18744.1 ID=prot_Ecto-sp13_S_contig7551.18744.1|Name=mRNA_Ecto-sp13_S_contig7551.18744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
METFCTSFGPQAPGTYGKLQALMCVCAVNSSLWRWEVEGRLSPASNSLYK
PHPPPPVKPKLGEVTQNKARGGGRTCTTPHTPHPNTERLTSRQDGEKEIV
ILRVARRQQYYAKKRKHKQKGNRSTSRFAPLDHSHLRLSDKQAFWNEQPP
ITMYYLR
back to top

mRNA from alignment at Ecto-sp13_S_contig7551:2583..3185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7551.18744.1 ID=mRNA_Ecto-sp13_S_contig7551.18744.1|Name=mRNA_Ecto-sp13_S_contig7551.18744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7551:2583..3185+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCTGGCGAAAAATGATTTTCCACAAGCGTCCGTGCCATCCTTAGCACC
ATATGGGGATTGCAAATCCACCTTACCGTCGGTGAGACCTTGACACCCGT
GCCGAAAAGCAAAAACCATTTTTGCTGCCTAGATGGAAACGTTTTGCACC
TCGTTCGGACCCCAAGCGCCGGGTACGTACGGTAAATTACAAGCTCTGAT
GTGTGTTTGCGCAGTCAACTCCTCGCTTTGGCGGTGGGAGGTGGAAGGAC
GACTGTCCCCCGCCTCCAATTCTCTCTACAAACCCCACCCACCCCCACCC
GTGAAACCCAAACTCGGTGAAGTCACGCAAAACAAGGCGCGAGGGGGAGG
GCGCACGTGCACGACCCCACACACACCTCACCCGAACACAGAACGGTTAA
CTTCAAGACAAGATGGCGAGAAAGAGATCGTAATTCTGCGAGTGGCCCGC
CGACAGCAGTATTATGCCAAGAAAAGAAAACACAAGCAAAAGGGTAACCG
TTCTACCTCACGGTTTGCTCCCCTCGATCACTCACATCTTCGTTTGTCGG
ACAAACAGGCGTTTTGGAACGAACAGCCTCCCATCACCATGTATTATTTG
AGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7551:2583..3185+

>mRNA_Ecto-sp13_S_contig7551.18744.1 ID=mRNA_Ecto-sp13_S_contig7551.18744.1|Name=mRNA_Ecto-sp13_S_contig7551.18744.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7551:2583..3185+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAACGTTTTGCACCTCGTTCGGACCCCAAGCGCCGGGTACGTACGG
TAAATTACAAGCTCTGATGTGTGTTTGCGCAGTCAACTCCTCGCTTTGGC
GGTGGGAGGTGGAAGGACGACTGTCCCCCGCCTCCAATTCTCTCTACAAA
CCCCACCCACCCCCACCCGTGAAACCCAAACTCGGTGAAGTCACGCAAAA
CAAGGCGCGAGGGGGAGGGCGCACGTGCACGACCCCACACACACCTCACC
CGAACACAGAACGGTTAACTTCAAGACAAGATGGCGAGAAAGAGATCGTA
ATTCTGCGAGTGGCCCGCCGACAGCAGTATTATGCCAAGAAAAGAAAACA
CAAGCAAAAGGGTAACCGTTCTACCTCACGGTTTGCTCCCCTCGATCACT
CACATCTTCGTTTGTCGGACAAACAGGCGTTTTGGAACGAACAGCCTCCC
ATCACCATGTATTATTTGAGG
back to top