mRNA_Ecto-sp13_S_contig75507.18742.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75507.18742.1
Unique NamemRNA_Ecto-sp13_S_contig75507.18742.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: A0A6H5LKM9_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKM9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.250e-23
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1
Query:    1 VAVAALYGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKLVR 159
            VAVAALYGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKL R
Sbjct:   87 VAVAALYGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKLGR 139          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: A0A7I4YJY4_HAECO (RPAP3_C domain-containing protein n=1 Tax=Haemonchus contortus TaxID=6289 RepID=A0A7I4YJY4_HAECO)

HSP 1 Score: 58.2 bits (139), Expect = 1.740e-8
Identity = 25/48 (52.08%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   10 AALYGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKL 153
            AA++GNRA SY+ +  + +A++DC+RA+EL+PKFA A++R+A AL K+
Sbjct:   38 AAVFGNRAQSYLNLERWPEALMDCNRALELDPKFAKALYRRACALDKM 85          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: A0A3P7WU08_HELPZ (TPR_REGION domain-containing protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A3P7WU08_HELPZ)

HSP 1 Score: 56.2 bits (134), Expect = 7.060e-8
Identity = 24/49 (48.98%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    7 VAALYGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKL 153
            +AA+ GNRA  Y+ +  + +AI+DC++A+EL+PKF  A++R+A ALKK+
Sbjct:   37 LAAVLGNRAQCYLNLERWSEAIMDCNKALELDPKFGKALYRRAQALKKI 85          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: A0A2G9U078_TELCI (Tetratricopeptide repeat protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9U078_TELCI)

HSP 1 Score: 51.2 bits (121), Expect = 4.900e-7
Identity = 21/40 (52.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:   10 AALYGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFR 129
            A ++GNRA SYV +  +++A++DC+RA+EL+PKFA A++R
Sbjct:   38 APVFGNRAQSYVNLERWQEALMDCNRALELDPKFAKALYR 77          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: F1QQI6_DANRE (Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) n=282 Tax=Teleostei TaxID=32443 RepID=F1QQI6_DANRE)

HSP 1 Score: 53.9 bits (128), Expect = 6.290e-7
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   19 YGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKLVRMHACI 174
            Y NRAA+Y   + + + I DC +AVELNP++  A+FR+A AL+KL     C+
Sbjct:  127 YQNRAAAYEQQMKWTEVIQDCSQAVELNPRYVKALFRRAKALEKLDNKKECL 178          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: A0A674MT34_TAKRU (Uncharacterized protein n=5 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A674MT34_TAKRU)

HSP 1 Score: 53.5 bits (127), Expect = 8.610e-7
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   19 YGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKLVRMHACI 174
            Y NRAA+Y   L + + + DC  AVELNP++  A+FR+A AL+KL     C+
Sbjct:  135 YQNRAAAYEQQLQWTEVVQDCSNAVELNPRYIKALFRRAKALEKLDNKKECL 186          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: UPI000854D295 (LOW QUALITY PROTEIN: mitochondrial import receptor subunit TOM70 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854D295)

HSP 1 Score: 53.5 bits (127), Expect = 8.610e-7
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   19 YGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKLVRMHACI 174
            Y NRAA+Y  +  +++ + DC +AVELNPK+  A+FR+A A +KL     C+
Sbjct:  126 YQNRAAAYEQLQTWKEVVQDCTKAVELNPKYVKALFRRAKAQEKLDNKKECL 177          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: H2TWD4_TAKRU (Uncharacterized protein n=9 Tax=Percomorphaceae TaxID=1489872 RepID=H2TWD4_TAKRU)

HSP 1 Score: 53.5 bits (127), Expect = 8.620e-7
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   19 YGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKLVRMHACI 174
            Y NRAA+Y   L + + + DC  AVELNP++  A+FR+A AL+KL     C+
Sbjct:  160 YQNRAAAYEQQLQWTEVVQDCSNAVELNPRYIKALFRRAKALEKLDNKKECL 211          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: UPI0012EED92F (mitochondrial import receptor subunit TOM70-like n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EED92F)

HSP 1 Score: 53.1 bits (126), Expect = 9.010e-7
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   19 YGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKLVRMHACI 174
            Y NRAA+Y   + + + + DC RAVE+NP++  A+FR+A AL+KL     C+
Sbjct:  125 YQNRAAAYEQQMKWTEVVQDCCRAVEMNPRYVKALFRRAKALEKLDNKKECL 176          
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Match: UPI0003AF88E7 (mitochondrial import receptor subunit TOM70 n=1 Tax=Pundamilia nyererei TaxID=303518 RepID=UPI0003AF88E7)

HSP 1 Score: 53.1 bits (126), Expect = 1.160e-6
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   19 YGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKKLVRMHACI 174
            Y NRAA+Y   + + + + DC +AVELNP++  A+FR+A AL++L     C+
Sbjct:  126 YQNRAAAYEQQMKWTEVVQDCSKAVELNPRYVKALFRRAKALERLENRKECL 177          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75507.18742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LKM9_9PHAE2.250e-2398.11J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7I4YJY4_HAECO1.740e-852.08RPAP3_C domain-containing protein n=1 Tax=Haemonch... [more]
A0A3P7WU08_HELPZ7.060e-848.98TPR_REGION domain-containing protein n=1 Tax=Helig... [more]
A0A2G9U078_TELCI4.900e-752.50Tetratricopeptide repeat protein n=1 Tax=Teladorsa... [more]
F1QQI6_DANRE6.290e-746.15Translocase of outer mitochondrial membrane 70 hom... [more]
A0A674MT34_TAKRU8.610e-746.15Uncharacterized protein n=5 Tax=Euteleosteomorpha ... [more]
UPI000854D2958.610e-744.23LOW QUALITY PROTEIN: mitochondrial import receptor... [more]
H2TWD4_TAKRU8.620e-746.15Uncharacterized protein n=9 Tax=Percomorphaceae Ta... [more]
UPI0012EED92F9.010e-744.23mitochondrial import receptor subunit TOM70-like n... [more]
UPI0003AF88E71.160e-642.31mitochondrial import receptor subunit TOM70 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75507contigEcto-sp13_S_contig75507:59..232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score101.7
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D7FNP6
Model size174
KEGG koko:K09527
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0484@1,KOG0550@2759
Cds size174
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.8358514-CDS-Ecto-sp13_S_contig75507:58..2321681464023.8358514-CDS-Ecto-sp13_S_contig75507:58..232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75507 59..232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75507.18742.1prot_Ecto-sp13_S_contig75507.18742.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75507 59..232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75507.18742.1

>prot_Ecto-sp13_S_contig75507.18742.1 ID=prot_Ecto-sp13_S_contig75507.18742.1|Name=mRNA_Ecto-sp13_S_contig75507.18742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
VAVAALYGNRAASYVMILGYEQAILDCDRAVELNPKFANAIFRKAMALKK
LVRMHACI
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mRNA from alignment at Ecto-sp13_S_contig75507:59..232-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75507.18742.1 ID=mRNA_Ecto-sp13_S_contig75507.18742.1|Name=mRNA_Ecto-sp13_S_contig75507.18742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75507:59..232- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCGGTGGCGGCGCTCTACGGAAACCGGGCGGCGTCGTACGTGATGAT CCTGGGGTACGAGCAGGCCATCTTGGACTGCGACAGGGCCGTCGAGCTCA ACCCCAAGTTCGCGAACGCCATCTTCAGAAAGGCCATGGCGCTCAAGAAG CTGGTGAGGATGCATGCATGCATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75507:59..232-

>mRNA_Ecto-sp13_S_contig75507.18742.1 ID=mRNA_Ecto-sp13_S_contig75507.18742.1|Name=mRNA_Ecto-sp13_S_contig75507.18742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75507:59..232- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCGGTGGCGGCGCTCTACGGAAACCGGGCGGCGTCGTACGTGATGAT
CCTGGGGTACGAGCAGGCCATCTTGGACTGCGACAGGGCCGTCGAGCTCA
ACCCCAAGTTCGCGAACGCCATCTTCAGAAAGGCCATGGCGCTCAAGAAG
CTGGTGAGGATGCATGCATGCATC
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