mRNA_Ecto-sp13_S_contig75503.18741.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: D8LFS3_ECTSI (Cytochrome c oxidase subunit Vb n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS3_ECTSI) HSP 1 Score: 183 bits (465), Expect = 2.660e-58 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1
Query: 1 GGIPDTHDTGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVPL 255
GGIPDTHDTGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVPL
Sbjct: 48 GGIPDTHDTGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVPL 132
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: A0A6U3QRH7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QRH7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 9.950e-23 Identity = 48/83 (57.83%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 19 HDTGR--QKTEREGVG---FNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVP 252
H GR Q+ E E +G FNRDPI PP G+GTK P +VPS + ERVVGFE P H + WF + AGKLHYV ID+YF LVP
Sbjct: 45 HQGGRRLQEIEDEKLGLVTFNRDPIMPPVGAGTKENPIQVPSGYDERVVGFEDPTVHQLQWFTMTAGKLHYVSSIDKYFTLVP 127
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: A0A7S1XX62_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX62_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.860e-19 Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 7 IPDTHDT--GRQKTEREG-----VGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 246
IPD D GR+K E + + FNRDPI PP G+GTK P VPSE +ERVVGFE P++H + WF L A +Y+E +D+YFKL
Sbjct: 37 IPDIEDQVFGRRKMELDAEKSGDLLFNRDPIVPPVGAGTKENPILVPSEFKERVVGFEDPDTHQIAWFCLQADATYYIESVDKYFKL 123
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: A0A835ZBD2_9STRA (Cytochrome c oxidase subunit VB n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 4.190e-19 Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 25 TGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 246
TG++ E G FN + PP GSGT+ P EVPS R VG+E PE+HA+YWF L AGK+H+V ID YFKL
Sbjct: 52 TGQRGEEVRGTFFNDQALMPPAGSGTREKPIEVPSRLDMRTVGYEDPETHAIYWFNLKAGKVHHVTPIDMYFKL 125
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: A0A6U1NDJ1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDJ1_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.020e-16 Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 34 QKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLV 249
Q+ ++E V + RDP+ P G GT A P VPS +ER VGFE P SH M WF L G +H+VEEID YFKL+
Sbjct: 53 QEAKKE-VAYVRDPVIPEPGQGTLANPILVPSAMKERAVGFEDPLSHQMQWFVLQEGDIHWVEEIDMYFKLI 123
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: A0A4D9DB47_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB47_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.500e-12 Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 61 FNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 246
FNRDP+ GTK+ P VPS ER+VG+E P H ++WF L G L YV +ID+YF L
Sbjct: 93 FNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSL 154
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: W7TKL4_9STRA (Cytochrome c oxidase subunit vb n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKL4_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.180e-11 Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 61 FNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 246
FNRDP+ GTK+ P VPS ER+VG+E P H ++WF L G L YV +ID+YF L
Sbjct: 195 FNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSL 256
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: A0A024FVF4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FVF4_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.010e-10 Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 7 IPDTHD--TGRQKTEREG-----VGFNRDPIHPPKGSG-TKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 246
IPD +D GRQ+ E E + FNRDPI + G +K P VPS + R +G H +S ++WF L GK+ YV +I++YFKL
Sbjct: 27 IPDIYDHAVGRQREELEDEKAGIITFNRDPIETDETQGNSKEDPILVPSFNDVRPIGVSHNDSSYVFWFNLQKGKIFYVPQIEKYFKL 114
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: A0A1E7FE28_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE28_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 8.990e-10 Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 4 GIPDTHDTGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAA-GKLHYVEEIDRYFKLVPL 255
GI D + ++ E G+N + PP+G+GT P +PS RVVG++ P+SHAM+WF + + +Y++++ +FK++P+
Sbjct: 92 GIEDLDELEQKNIE----GYNDLGLVPPEGTGTFTSPILIPSRRTSRVVGYQDPDSHAMFWFTIHSDNSSYYIKDLGLFFKMLPI 172
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Match: A0A485KGU5_9STRA (Aste57867_13701 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGU5_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 2.450e-9 Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 28 GRQKTE----REGVG-FNRDPIHPPKGSG-TKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 246
GRQ E EG+ FNRDP+ + G +K P VPS + +R VG H +S + WF L GK+HYV + D+YFKL
Sbjct: 34 GRQGEELHLAEEGIELFNRDPVSSEEHQGNSKDDPILVPSFNSQRAVGISHNDSPYIVWFNLDEGKVHYVPQFDKYFKL 112 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75503.18741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig75503.18741.1 >prot_Ecto-sp13_S_contig75503.18741.1 ID=prot_Ecto-sp13_S_contig75503.18741.1|Name=mRNA_Ecto-sp13_S_contig75503.18741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp GGIPDTHDTGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVback to top mRNA from alignment at Ecto-sp13_S_contig75503:303..560- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig75503.18741.1 ID=mRNA_Ecto-sp13_S_contig75503.18741.1|Name=mRNA_Ecto-sp13_S_contig75503.18741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75503:303..560- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75503:303..560- >mRNA_Ecto-sp13_S_contig75503.18741.1 ID=mRNA_Ecto-sp13_S_contig75503.18741.1|Name=mRNA_Ecto-sp13_S_contig75503.18741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75503:303..560- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |