mRNA_Ecto-sp13_S_contig755.18740.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig755.18740.1
Unique NamemRNA_Ecto-sp13_S_contig755.18740.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 6.830e-62
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    1 NARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAASVGDGGVD 306
            NARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAASVGDGGVD
Sbjct: 3230 NARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAASVGDGGVD 3331          
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: A0A6H5KGG7_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGG7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.020e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:  157 KVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAASVGDGGVD 306
            KVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAASVGDGGVD
Sbjct:    9 KVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAASVGDGGVD 58          
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: A0A024GJ80_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GJ80_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.830e-23
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 NARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAAS-VGDGGVD 306
            NA+ES+ +IES G  C  G +GR LQY D DFPPD SS+ N  C+  +   WK S+ +N +  LFD G+DPDDV  G   D WLLSA+SII+A+  + DG VD
Sbjct: 1934 NAQESIMEIES-GYSCIIGHFGRSLQYVDTDFPPDQSSLSNCSCQNDVKG-WKTSIQINANCSLFDAGSDPDDVCVGRLNDLWLLSAISIIAASGGINDGKVD 2034          
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: A0A485LHZ7_9STRA (Aste57867_21065 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHZ7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.200e-22
Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 NARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAAS-VGDGGVD 306
            NA E+L +IES G  C  G +GR LQ+ DPDFPPD SS+       ++   W+VS A+N    LFD GTDPDDVR G   D W LSA+SI++A+  V DG VD
Sbjct: 1968 NALEALSEIES-GYACNVGQFGRSLQFVDPDFPPDYSSLAGCANEAEVVD-WRVSTAINITAGLFDGGTDPDDVRFGRLNDGWFLSAVSIMAASGGVDDGKVD 2068          
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: A0A6G0X9E6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9E6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.040e-21
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 NARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAAS-VGDGGVD 306
            NA+E++ +IES G  C  G +GR LQ+ DP+FPPD SS+        +  +W+VS A+N    LFD GTDPDDVR G   D W LSA+SI++A+  + DG VD
Sbjct: 1938 NAQEAIAEIES-GYACVVGQFGRSLQFMDPEFPPDRSSIAGCAHEADVV-EWRVSTAINITAGLFDGGTDPDDVRYGRLNDGWFLSAVSILAASGGLDDGKVD 2038          
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: A0A7S2B0H8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B0H8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.760e-21
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 NARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAAS-VGDGGVD 306
            NA+++L ++ES   GCR   + R++Q+ D  FP D S++G  +   ++  +W  ++A+NPD RLFD+GTDPDDV  G     WL+SALS++SAA  VGD  VD
Sbjct:  284 NAQKALAELESGDTGCRVSKH-RRMQFYDASFPADGSALGRCEVTPEVC-RWMPAIAINPDSRLFDEGTDPDDVFTGRIKSKWLMSALSMLSAAGGVGDADVD 384          
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: A0A074ZJ10_9TREM (Calpain catalytic domain-containing protein n=6 Tax=Opisthorchiidae TaxID=6196 RepID=A0A074ZJ10_9TREM)

HSP 1 Score: 59.3 bits (142), Expect = 4.440e-8
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   70 KLQYADPDFPPDNSSVGNA-QCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSII 273
            KL + DPDFP D SS+G+  + + ++   WK    +NP  R F DG    D+++GA  D WLL+ LS I
Sbjct:   47 KLLWCDPDFPADESSIGDLPELKDRII--WKRVRDINPHARFFVDGPARCDIKQGALGDCWLLAVLSSI 113          
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: A0A5J4NZJ5_9TREM (Calpain, invertebrate n=2 Tax=Paragonimus TaxID=34503 RepID=A0A5J4NZJ5_9TREM)

HSP 1 Score: 58.9 bits (141), Expect = 6.070e-8
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   70 KLQYADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIIS 276
            K  + DPDFPP++SS+G  + R +L  +WK    +NP    F  G    D+ +G+  D WLL+ +S IS
Sbjct:   63 KKLWEDPDFPPNDSSIGIPEMRGKL--EWKRPREINPKAEFFVGGASRFDIEQGSVGDCWLLAVVSSIS 129          
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Match: A0A7S0RLL9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RLL9_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 6.330e-5
Identity = 22/71 (30.99%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   79 YADPDFPPDNSSVGNAQCRQQLASQWKVSLAVNP-----DIRLFDDGTDPDDVRRGAFADSWLLSALSIIS 276
            + D +FPP+N S+G +   + L  +WK ++ +N       + LF++   P D+R+GA A+ WL++A++ ++
Sbjct:    2 FIDNEFPPNNRSLGPSLEPRHL--EWKRAIDINELKRSGQLTLFEERISPSDIRQGALANCWLMTAITSLA 70          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig755.18740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FQ17_ECTSI6.830e-62100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGG7_9PHAE4.020e-24100.00Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A024GJ80_9STRA1.830e-2351.46Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A485LHZ7_9STRA2.200e-2251.46Aste57867_21065 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X9E6_9STRA1.040e-2148.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2B0H8_9STRA4.760e-2145.63Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A074ZJ10_9TREM4.440e-842.03Calpain catalytic domain-containing protein n=6 Ta... [more]
A0A5J4NZJ5_9TREM6.070e-839.13Calpain, invertebrate n=2 Tax=Paragonimus TaxID=34... [more]
A0A7S0RLL9_9CHLO6.330e-530.99Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig755contigEcto-sp13_S_contig755:21006..21668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score213.4
Seed ortholog evalue5e-53
Seed eggNOG ortholog2880.D7FQ17
Model size306
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG0045@1,KOG0045@2759,KOG4626@2759
EC2.4.1.255
Cds size306
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.7438173-CDS-Ecto-sp13_S_contig755:21005..211521681464023.7438173-CDS-Ecto-sp13_S_contig755:21005..21152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 21006..21152 -
1681464023.757368-CDS-Ecto-sp13_S_contig755:21509..216681681464023.757368-CDS-Ecto-sp13_S_contig755:21509..21668Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 21510..21668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig755.18740.1prot_Ecto-sp13_S_contig755.18740.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig755 21006..21668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig755.18740.1

>prot_Ecto-sp13_S_contig755.18740.1 ID=prot_Ecto-sp13_S_contig755.18740.1|Name=mRNA_Ecto-sp13_S_contig755.18740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
NARESLEDIESQGRGCRPGAYGRKLQYADPDFPPDNSSVGNAQCRQQLAS
QWKVSLAVNPDIRLFDDGTDPDDVRRGAFADSWLLSALSIISAASVGDGG
VD
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mRNA from alignment at Ecto-sp13_S_contig755:21006..21668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig755.18740.1 ID=mRNA_Ecto-sp13_S_contig755.18740.1|Name=mRNA_Ecto-sp13_S_contig755.18740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig755:21006..21668- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCCCGCGAGAGCCTCGAGGACATCGAGTCCCAAGGTCGTGGTTGCCG CCCGGGGGCCTATGGCCGGAAGCTGCAGTATGCAGACCCCGATTTCCCCC CAGACAACTCCTCCGTGGGGAACGCGCAGTGCAGGCAGCAGCTGGCCTCG CAGTGGAAGGTCTGTTATGTTGGAGATTTTGCGAATTGTGGGATGGTAGA AAACAGTTGTCGACCATCCCGCCCTACTAGTTTTGTTGGTTCAATTGGTT ATGGTGGTGTGATGTGGACGATATTGCTGTTCGCGTGGAGGTTTGATGTT GCGTGCGATTGGAATTATTCCGGTTGTTCTCGCGTTGAAGAAGAGACAAA GTCGTCTGACATCATGGTGTCGCATTCGTCCGAATTTGCAACTCGACCGG CAGTAAAACCTGTCGAAAGAACATCCAGCAGCAGCCAACAGCGTTGTTAT TTACAACTAGCTTTAGCATAGGATAACCATCCTCTTTGTATGATCCTTCG TGTTGGCCACTTGAAGGTCTCACTGGCTGTAAACCCAGACATCAGGCTTT TCGATGACGGAACGGATCCAGACGATGTGCGGCGAGGAGCCTTCGCTGAC TCCTGGCTGCTATCGGCCCTCAGCATCATTTCCGCGGCCTCGGTAGGGGA CGGGGGCGTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig755:21006..21668-

>mRNA_Ecto-sp13_S_contig755.18740.1 ID=mRNA_Ecto-sp13_S_contig755.18740.1|Name=mRNA_Ecto-sp13_S_contig755.18740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig755:21006..21668- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCCCGCGAGAGCCTCGAGGACATCGAGTCCCAAGGTCGTGGTTGCCG
CCCGGGGGCCTATGGCCGGAAGCTGCAGTATGCAGACCCCGATTTCCCCC
CAGACAACTCCTCCGTGGGGAACGCGCAGTGCAGGCAGCAGCTGGCCTCG
CAGTGGAAGGTCTCACTGGCTGTAAACCCAGACATCAGGCTTTTCGATGA
CGGAACGGATCCAGACGATGTGCGGCGAGGAGCCTTCGCTGACTCCTGGC
TGCTATCGGCCCTCAGCATCATTTCCGCGGCCTCGGTAGGGGACGGGGGC
GTCGAC
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