mRNA_Ecto-sp13_S_contig755.18738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig755.18738.1
Unique NamemRNA_Ecto-sp13_S_contig755.18738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig755.18738.1 vs. uniprot
Match: D7FQ16_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ16_ECTSI)

HSP 1 Score: 488 bits (1256), Expect = 2.640e-170
Identity = 256/267 (95.88%), Postives = 259/267 (97.00%), Query Frame = 1 
Query:    1 MADFKLSAPKRLGKTVILGYCDIGAAGIRVLEGMSGSSQMTGEGACSRLRETGREALAFSGMGAAVFDGVPALEAVHFESSAGGTDEPSVTLLKLNTAVGQDLSASLSLSLVDLLVARRPTLDRLIIAAAVQPPKRHQIPAEAATIPPDVVCAFSCGGADSNSSPLPGSLSSLPSLPTGARIADSFLMTLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNRACGVRRSKGWKGSPSAQVVPGYI 801
            MADF LSAPKRLGKTVILGYCDIGAAG+RVLEGMSG+SQMTGEGACSRLRETGREALAFSGMGAAVFDGVPALEAVHFESSAGGTDEPSVTLLKLNTAVGQ LSASLSLSLVDLLVARR TLDRLIIAAAVQPPKRHQIPAEAATIPPD VC FSCGG DSNSSPLP SLS+LPSLPTGARIADSFL TLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNRACGVRRSKGWKGSPSAQVVPGYI
Sbjct:    1 MADFTLSAPKRLGKTVILGYCDIGAAGVRVLEGMSGASQMTGEGACSRLRETGREALAFSGMGAAVFDGVPALEAVHFESSAGGTDEPSVTLLKLNTAVGQGLSASLSLSLVDLLVARRTTLDRLIIAAAVQPPKRHQIPAEAATIPPDAVCTFSCGGVDSNSSPLPASLSTLPSLPTGARIADSFLTTLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNRACGVRRSKGWKGSPSAQVVPGYI 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig755.18738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ16_ECTSI2.640e-17095.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig755contigEcto-sp13_S_contig755:9005..12938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1399
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007850.1
Cds size804
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig755.18738.1prot_Ecto-sp13_S_contig755.18738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig755 9005..12343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.5139422-CDS-Ecto-sp13_S_contig755:9004..90891681464023.5139422-CDS-Ecto-sp13_S_contig755:9004..9089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 9005..9089 +
1681464023.5288773-CDS-Ecto-sp13_S_contig755:10394..105701681464023.5288773-CDS-Ecto-sp13_S_contig755:10394..10570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 10395..10570 +
1681464023.5402293-CDS-Ecto-sp13_S_contig755:10964..111171681464023.5402293-CDS-Ecto-sp13_S_contig755:10964..11117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 10965..11117 +
1681464023.5518785-CDS-Ecto-sp13_S_contig755:11613..118681681464023.5518785-CDS-Ecto-sp13_S_contig755:11613..11868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 11614..11868 +
1681464023.563036-CDS-Ecto-sp13_S_contig755:12208..123431681464023.563036-CDS-Ecto-sp13_S_contig755:12208..12343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 12209..12343 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.5736518-UTR-Ecto-sp13_S_contig755:12343..129381681464023.5736518-UTR-Ecto-sp13_S_contig755:12343..12938Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig755 12344..12938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig755.18738.1

>prot_Ecto-sp13_S_contig755.18738.1 ID=prot_Ecto-sp13_S_contig755.18738.1|Name=mRNA_Ecto-sp13_S_contig755.18738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
MADFKLSAPKRLGKTVILGYCDIGAAGIRVLEGMSGSSQMTGEGACSRLR
ETGREALAFSGMGAAVFDGVPALEAVHFESSAGGTDEPSVTLLKLNTAVG
QDLSASLSLSLVDLLVARRPTLDRLIIAAAVQPPKRHQIPAEAATIPPDV
VCAFSCGGADSNSSPLPGSLSSLPSLPTGARIADSFLMTLVRLCRLEDVP
LTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNRACGVRR
SKGWKGSPSAQVVPGYI*
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mRNA from alignment at Ecto-sp13_S_contig755:9005..12938+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig755.18738.1 ID=mRNA_Ecto-sp13_S_contig755.18738.1|Name=mRNA_Ecto-sp13_S_contig755.18738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3934bp|location=Sequence derived from alignment at Ecto-sp13_S_contig755:9005..12938+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGATTTCAAACTCTCTGCGCCGAAGCGGCTGGGCAAAACTGTCAT
TCTGGGCTATTGTGACATCGGCGCGGCAGGCATTCGTGAGTGCTTGAGCG
TTTGTTCTCTACAAGCAGCTACTCATTCAGCAGTGTATATATATATAGTT
AGAAATCCAGAGTAGTGCGATTGGAGCACCAAAACGAGCCAGCACTAGGC
TGCACGAACAACAATAGTGCCAACAGCCGCAGCACTATGGAACACTTGTC
TGTTGCCGTCCTAAAGGTGACAAATATCACGCGAAGAGTACATATACTGT
AAGCGTATTCTTTCTCGAGACTACGGAGCGCTCCTGAAGCGTAGACCGCC
GTTGACGTGAGATATCACACCCCCTTGCACTATTTTCAAAGCTGGATAAC
CCCACAGCAGAGTGGCGGTATCAAAAATGGCCGCGTTGGAATCGCCTCGT
CCAGAGCTTTCCGAAAATGCGTCATTTGGTTGAGGCATCCTCTTCGTGGT
GGAGTAGTCGACAATGAACAATGTACAGTACGTACGGCATACGCATACCG
TTATTGACACAAGATAACACACCCCTTGGACCAATTTTCAAACTCGATTA
CGCCACGACGAAGAGGATGTATAAATGTAACAATGCATTATCGGAAAGCT
CTCGACGACACAGCTTCAATCCCACCGTTTTCGGCGCTGTGACTCTTTCT
GTTGTTGAGAGAGTGAGATTTGAAAATCGGTCCAGGGGGTGCGTTATCTT
GTGCCATTCAATGGACTCCTTTCTTGTTCACTGGCGAAGTCCCGATACCA
ACCGCGCTCGTGGAACGAGTGAGCCGGACAACACCATAAGGGCTCTGGAT
CTGCTGTTTTCCGACGGAAGTATAGAGTAGCCGAGTAGACCAGATCTTCC
TCACGCACGATATCGGACAGCACAGAGGACCAAAACACCGGAGAACCCAA
CACACATGTGCGATCCCAAGCTGCCGGCACAACGAGCGTGCACGCGGCGC
CTCAAGTCATGGCACGTGTGGCTACCACCCACGTTGTGCCGGCGGTTTTG
AATTGCACATGCGTTTGGGTTCCTGCATTGACGTGCCGTGGCACGTTGTC
ATGTCCAGGTGTTGTCGTGTTTCGGAGTCTTGTTGCAGTTGCAAGTTGTA
GGTGAGTGCGGTGTCTCGTGCGAGGGCACGAGTGAGGCAGCACGCGGCAG
CTAGCTGGCTTTACGCGGAGGACAACGTCAGTTTTGAGTTCTTCAAACGA
AAAAATGTGGTAATATCTCGAACGGGTGATGTTTGTAATAAGTCGAAGAA
TACCGTAAAAGAAAAATGTCACGTACTGCAACACCGGTGGAATGCCACCA
TCCCCTACGATGACTCCCTTGTGGTACCCACTTTCGGAAGGTGTTCTTGA
AGGCATGTCGGGGTCATCACAGATGACGGGCGAAGGGGCTTGTTCGAGGT
TACGCGAGACGGGGAGGGAGGCCCTCGCTTTCTCGGGTATGGGGGCTGCG
GTGTTCGATGGGGTTCCGGCTTTGGAAGCCGTGCACTTCGAAAGCTCGGC
AGGCGGTACTGATGAGGTGTGGTTGTGGTGGAGGTTCGTGTTGTTTCGTA
TGCCAGGCCGTGACTAGGTTCGGGTTGTGCTTGAAACCGCATGTTGTGCG
TACTATACATGTGTCGCAGGTCTCTCTGTTACTCGAGCGGAGCACTGCTG
CTTGGCTGTGAGTGCTTACTCTCCATCTGACAACCTTTTTTTTTTCCTGT
TTCCGCCTACCTGCCATCGCGTTTCAGTTTTTGCGATTTTCTGTTTTCAT
GTTTTTGCTCCTGTCCACCATACTGTTAACCCTGTGCCCTCAAGAAAACC
AACCTCTGCGAAATATGCCTATGCTCGTTTTTACTCTTGTCCCTCCCGCC
GTTCGGGGTCTGCCTGCTTCGTTACCTCGCCTCTTCGCGCGTCTTTTCTC
CCGTTTTCAGCCGTCCGTCACCCTGCTTAAGCTAAACACAGCGGTTGGCC
AGGACCTATCGGCATCGCTGTCGTTATCTCTCGTCGACCTACTCGTCGCG
CGAAGACCAACCCTCGACAGGCTCATCATCGCAGCTGCTGTGCAGCCCCC
CAAGAGGCACCAGGTGATTTTTATGGATCGAACAACAACACCCCCCGATT
GGGCTGATTGACGTGCCTGATCTCTTTGAGATTGCGCCTGTTGTGCGGCC
TTTTTTCCCGACGAAAACTCGGCATAGCCATCACCATTGCTGATTTGAGG
TGTGCACCCCTGCGCTGCACGGACGAACCTGCACTATGATAGCACGATTG
GAGCTTCCTGGTCTGTTACAAGTGCCCGCCCCTTGTTTGCATGATATGAA
GATGACGGTACTGTCGTGCTGCCACACAAGGCGAGCTGGTGCACCATCTC
GTTTTCGCGTCACGAAGAAGCAGCTCGGTTACCGTTTGTTTGCTTGATGC
ATGTCTCGCTCGGTCTCTCTTCCACGTACACGCATCGATAAAACAACGAC
ACCCTCACACCGCTCGTGACCTCCTGTCCTATGTCCTGACGCACGCTCGC
CGACCTCTTCCTTTCTTATTCCCCAATTGTACAATCCATTCCTCTGCTGG
CATGGCCAGATCCCGGCAGAAGCCGCAACCATTCCACCGGACGTTGTGTG
TGCTTTCTCCTGCGGCGGCGCGGACAGCAACTCCTCTCCTTTGCCGGGTT
CGTTGTCCAGCCTTCCGTCGTTGCCCACCGGGGCCCGAATCGCCGATTCA
TTCCTCATGACCCTGGTGCGACTCTGCAGGCTGGAAGACGTGCCGTTGAC
GGTATTGGCACGTGTTGGCTACCGCACCACGGGAGCGGCCGCCGACGTGG
ATGGGACGGACGAGGTGGGAGAAGCATGTACGGGGGTGTGGTGAAGTAGG
CAGACAGCAGTACGACTCTTGAGAGTCGAACATGTGTTTGCCAAACCGTT
GGAGGCTTTGATGTGGGAATGATTCTTCGAAGAAGGAACGCGTGTAAGAC
CTGAAGGTCGTGCGCTGTCTTGTCGAATGGCGAGATACGTACCACCCACC
TATTGTGCAACTGCTTTCCCCTGAAGTTCCGTTGTTTCTCAGATCGAACG
CTCAAGCTTCCTGTTGTGGCATATCCAACCCATGCACCCCTCCTCGCGCC
CGCGCCCACCTCCAAATGTTCGTTTCCTTTGTGTGGCTGCTGTGGTATGC
GCAGGCGATCAACGGTCTCGGGCAGTGCCTTGCACAGGCGGTGGGGCTGG
AGTTCAACTCCAACAGGGCGTGCGGAGTGCGAAGATCGAAGGGCTGGAAA
GGCAGTCCCTCGGCACAGGTCGTGCCCGGGTACATTTAGTGGGAGAGCGC
GGTTTTTCTAGGGTGCAACTTGGTTGAGCTGTACTTGACGTGTGTGTTAC
CTCCCTGTGCCTGGTTGTTGTCATTGTCAAGCACGGCCGGAGCCATCACT
CATCTACCTACGCATGGTTAGGGTTCATGCAGGAGGGGGTGGCATTGTCC
AGGCGTAGGAGGGGGCGGCATAGTCTAAACGTATAGTCTACACGCCGCAC
GAATGGATGAAACGGGCTTCCTGTGGTGCTCTGTTCTGGCGAATGTGTCG
TCGTCGGTATCTAACGATTCGTATGGGAGATGCCCCTGCTTGCCGTACGT
ATTGGCGAAGCTTGCGAGTCGCACAGTCGAGCGCGCATGTGCGACAAAAA
GGAAATTACGGCGCTTCACCGCGATACGAAACAACCAGGTGCAAAGCGCG
CTAAGGCTTCTTCGATCGTGAGCGCGATTGATCCTTGCCACAAAGGTTGG
GAGATGGAGGACAGGAACCCTTTCTTTCTCACACAGTCAGGAGCTTGTGG
CATTATCTTTTGTGCCAGAGACGAAGGCGAGAGAGAGGGATCGACCAAGC
GTGTCCCCAATTATCATGCGTTTGAAGGTTTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig755:9005..12938+

>mRNA_Ecto-sp13_S_contig755.18738.1 ID=mRNA_Ecto-sp13_S_contig755.18738.1|Name=mRNA_Ecto-sp13_S_contig755.18738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig755:9005..12938+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGATTTCAAACTCTCTGCGCCGAAGCGGCTGGGCAAAACTGTCAT
TCTGGGCTATTGTGACATCGGCGCGGCAGGCATTCGTGTTCTTGAAGGCA
TGTCGGGGTCATCACAGATGACGGGCGAAGGGGCTTGTTCGAGGTTACGC
GAGACGGGGAGGGAGGCCCTCGCTTTCTCGGGTATGGGGGCTGCGGTGTT
CGATGGGGTTCCGGCTTTGGAAGCCGTGCACTTCGAAAGCTCGGCAGGCG
GTACTGATGAGCCGTCCGTCACCCTGCTTAAGCTAAACACAGCGGTTGGC
CAGGACCTATCGGCATCGCTGTCGTTATCTCTCGTCGACCTACTCGTCGC
GCGAAGACCAACCCTCGACAGGCTCATCATCGCAGCTGCTGTGCAGCCCC
CCAAGAGGCACCAGATCCCGGCAGAAGCCGCAACCATTCCACCGGACGTT
GTGTGTGCTTTCTCCTGCGGCGGCGCGGACAGCAACTCCTCTCCTTTGCC
GGGTTCGTTGTCCAGCCTTCCGTCGTTGCCCACCGGGGCCCGAATCGCCG
ATTCATTCCTCATGACCCTGGTGCGACTCTGCAGGCTGGAAGACGTGCCG
TTGACGGTATTGGCACGTGTTGGCTACCGCACCACGGGAGCGGCCGCCGA
CGTGGATGGGACGGACGAGGCGATCAACGGTCTCGGGCAGTGCCTTGCAC
AGGCGGTGGGGCTGGAGTTCAACTCCAACAGGGCGTGCGGAGTGCGAAGA
TCGAAGGGCTGGAAAGGCAGTCCCTCGGCACAGGTCGTGCCCGGGTACAT
TTAG
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