mRNA_Ecto-sp13_S_contig7546.18735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7546.18735.1
Unique NamemRNA_Ecto-sp13_S_contig7546.18735.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7546.18735.1 vs. uniprot
Match: D7G1X9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X9_ECTSI)

HSP 1 Score: 510 bits (1314), Expect = 1.750e-175
Identity = 251/256 (98.05%), Postives = 255/256 (99.61%), Query Frame = 1 
Query:    1 QDLCRIKWEPDPDQLPSNWFRGHIPDMIKCKMFDLWQADPEKHTAMALAKQFGLPYLDVQAILTLKIKAKENVETIEGYEIYPEIEEIFTERKEAYIEELAQHYGQDIPFIYEHCPDIDKNDPSSWTNPREFKLGKLTEQDRSNKFDRPPLQSQDEVAEDLKYKRTNKAIYAAVREEEAAELTKKLEKEPKLPKRRWAYALKDTSSKDSSMVPPVLRDADGVMRAATVDEERGLSYADDNLFRRDVRRWTALREMP 768
            +DLCRIKWEPDPDQLPSNWFRGHIPDMIKCKMFDLWQADPEK+TAMALAKQFGLPYLDVQAILTLKIKAKENVETIEGYEIYPEIEEIFTERKEAYIEELAQHYGQDIPFIYEHCPDIDKNDPSSWTNPREFKLGKLTEQDRS+KFDRPPLQSQDEVAEDLKYKRTNKAIYAAVREEEAAELTKKLEKEP LPKRRWAYALKDTSSKDSSMVPPVLRDADGVMRAATVDEERGLSYAD+NLFRRDVRRWTALREMP
Sbjct:  106 EDLCRIKWEPDPDQLPSNWFRGHIPDMIKCKMFDLWQADPEKNTAMALAKQFGLPYLDVQAILTLKIKAKENVETIEGYEIYPEIEEIFTERKEAYIEELAQHYGQDIPFIYEHCPDIDKNDPSSWTNPREFKLGKLTEQDRSSKFDRPPLQSQDEVAEDLKYKRTNKAIYAAVREEEAAELTKKLEKEPNLPKRRWAYALKDTSSKDSSMVPPVLRDADGVMRAATVDEERGLSYADENLFRRDVRRWTALREMP 361
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7546.18735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1X9_ECTSI1.750e-17598.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7546contigEcto-sp13_S_contig7546:1025..7180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1816
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_003730.1
Cds size693
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7546.18735.1prot_Ecto-sp13_S_contig7546.18735.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7546 2070..7102 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.1017804-UTR-Ecto-sp13_S_contig7546:1024..20691681464023.1017804-UTR-Ecto-sp13_S_contig7546:1024..2069Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7546 1025..2069 -
1681464023.166868-UTR-Ecto-sp13_S_contig7546:7102..71801681464023.166868-UTR-Ecto-sp13_S_contig7546:7102..7180Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7546 7103..7180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.1120267-CDS-Ecto-sp13_S_contig7546:2069..22071681464023.1120267-CDS-Ecto-sp13_S_contig7546:2069..2207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7546 2070..2207 -
1681464023.1213522-CDS-Ecto-sp13_S_contig7546:2654..27831681464023.1213522-CDS-Ecto-sp13_S_contig7546:2654..2783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7546 2655..2783 -
1681464023.1305082-CDS-Ecto-sp13_S_contig7546:3224..33751681464023.1305082-CDS-Ecto-sp13_S_contig7546:3224..3375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7546 3225..3375 -
1681464023.1394086-CDS-Ecto-sp13_S_contig7546:4238..43581681464023.1394086-CDS-Ecto-sp13_S_contig7546:4238..4358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7546 4239..4358 -
1681464023.148166-CDS-Ecto-sp13_S_contig7546:5101..51961681464023.148166-CDS-Ecto-sp13_S_contig7546:5101..5196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7546 5102..5196 -
1681464023.1569314-CDS-Ecto-sp13_S_contig7546:7042..71021681464023.1569314-CDS-Ecto-sp13_S_contig7546:7042..7102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7546 7043..7102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7546.18735.1

>prot_Ecto-sp13_S_contig7546.18735.1 ID=prot_Ecto-sp13_S_contig7546.18735.1|Name=mRNA_Ecto-sp13_S_contig7546.18735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
MIKCKMFDLWQADPEKHTAMALAKQFGLPYLDVQAILTLKIKAKENVETI
EGYEIYPEIEEIFTERKEAYIEELAQHYGQDIPFIYEHCPDIDKNDPSSW
TNPREFKLGKLTEQDRSNKFDRPPLQSQDEVAEDLKYKRTNKAIYAAVRE
EEAAELTKKLEKEPKLPKRRWAYALKDTSSKDSSMVPPVLRDADGVMRAA
TVDEERGLSYADDNLFRRDVRRWTALREMP*
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mRNA from alignment at Ecto-sp13_S_contig7546:1025..7180-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7546.18735.1 ID=mRNA_Ecto-sp13_S_contig7546.18735.1|Name=mRNA_Ecto-sp13_S_contig7546.18735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7546:1025..7180- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATCTGTGCCGCATCAAGTGGGAGCCCGATCCCGACCAGCTGCCTAG
CAACTGGTTCCGAGGACACATCCCGGACATGATCAAGTGCAAGATGTTCG
ACTTGTGGCAGGCGGACCCTGAGAAGCACACTGCGATGGTGCGTGACGAG
GGGCTAGGGGTTAGGTTAGGGAGGGGTTTAGACAGGCGGACATACAGACG
TTTGACGCACGGACAAAGAAGTCGACACAGGCGTAGTACATACAGACGGC
GACCAACGGAAATTCAGGCACAGGAGGATACGAGAACGAGAGAGACGGAG
AACCAGAGAGGGAGAGACGCGACAAATGAACACACAAGTACGGACAGAGA
GACGGACAAGCAGACTAGAGACACCAGAGATTTGCCAGAGAAGCAGACAA
CAACGGCATATATACTCCAGTGACCGGTTTCTTTCAAGCTCTAAGGGCGT
GTACTAACGTTCTAGACCAAAAGAGGAACCGGCAACGGGGGACTCGGAAT
TACCTGTTCCTTGGTCCATGTCGTTGTGTCCTAACCATACCACATGCCGC
AGCATTCAGGCATGGAATACGGAACATTTCAGTGCGCGCGTGCGGCCTGC
AGGTACTCAGAGGCAACAGATGCAACCATGGGATGCAGAAAGACGTGTGG
AGGGTAGCGGGACGAAGGAGGTGGTGTAGGTTTCGAAGGAAGCTGTTGAC
GAGCGCACATCAAACACGTGTGCTACGGTATTGGCTGGAACAGACAGTGG
TCGTCGTGCAATCCGCACCCTCGGGAGTGCTGTGGAAGGCTGCATGTTTG
CGTTGTGGTCAACGGCAGCTTGCCGCTCTCTTTGGCACTCTGTCTTCCCC
AATACCACGGCTATACGAGAGATCATCCGCCGCCGTTTATTTGCGTGCGA
GGCACCTGATGATGGTGGCAATGCCTATTCTGCTTGAACCGGTACTGTGG
CATGCAGCCGCTGTGGCAGCCACGTGCCCGAGAGTGATCACATACATCCC
GCCACGTCCTGAATTGCCACCGACGAATCCGTTTTCCACGTTCCCGACAA
GTATGGTCAGTTGGCTAGTTTTATTTAACTTGTTCCAAAAATGATGGTGC
GGCGCAATTACCCCAAAAAGGGAACCCGGCGGGTCTCAACTACTGTTTCT
AGGACGGTTATTTTGTGTGGCTGGCCAATCAGACAACCATTCCGAGTACC
CTGTTCCCTGATTTGGGGAAGGGGGTTAGTACACGCCCTACCGTAGACCG
ACTACACCACACACAAGGAGCACACGCCGGTAGGCATCGTTTAGTCTTCG
AATAGGCCAACCCTCCCGGCGGCGTCGTTTCCGGAGAAACAGGCTCTGTG
GCATCTTTCACATACATATCCTGTTGCTTGGCCTGTCGATGTGAGCGTTA
ACACCTTCATCTTTTCGGCACGTTTTTAAGGCCAACCATGTGTGGTGGTG
CCCTAACCGAGTGCGGTGGTCTGCTGCAGGGGATAGTGGTGTCTACTGTC
TACCTCTCACTCACAGAGGCGTGTTGTCTGTGTAGGCGACCTACTACGGC
AGTCTGTTGTCTTCGCAGGCTACCTGTGGCGGTGAAGTCTGGTCTTTGCG
GCCGTATGTGTGGACTCTGCTCTTGAGAATGAAGCATCGGCGATGGAGCG
GGGCGGGGTATCGGCCAGGGAAAACCAAGAATGAAGCTCGTTTGGGTTAT
GTTTATTGCCGGCTCTATCGAGCGCAAGCTGGCGTGGAGCGTCCACCCAT
CCATTCTTGTGTATTTCCTTGCTTAACGCACGGAGCTGTTTGTGGCGTCG
GTTTTTGCTGTTTCCGTTTGCTTGGAAGCGAGACCGTGCTGACTGCCTTC
CCTCGCAACACCGTGCTCATTTTCTCGTCCCTTTCGCGTGCCTCTCTCCC
CGCCAGCTCTTACCTCGTACCATGCGGTCGTTGCTGATAGCCTCTCCACC
GCCCGTGCCCCGTCGCCGATGCTTTTTTCGCCAGGCCCTGGCGAAGCAGT
TTGGATTGCCATACCTAGATGTGCAGGCCATCCTGACCCTCAAGATCAAG
GCCAAGGAAAACGTGGAGACGATTGAGGGGTGATACAGATTGGGCTGTCA
GATCATGGGCTCGGTACATATCTCAATATACCACGACTTGAGGGGGTGTT
TTTGGTGCCTCTCGTTCGTGGGTGTCACGTGGGCGTCGTTTCGGCTCATG
GGGCTCCAGGCTTGTTCGATTTTGTTTCCCTTGAACCCAAACACACGTGC
GTCGTCACAGGCTCGATCGATGACAGGAAGGCAAGAATCCTGTGTGGTGT
ATTGGCGCACAACGAGCACGCCGTGCTCGCTTTGTAAGTTACTCCCTCCA
TGACCGTTGTTCCCCTCCGTTCCCCTCCTCCCTGACGTTCGTCGGTGACG
ACACCGACCGTTCTGTAAACACATACACACACATTACTCACCAGGCTCAA
GCGTACTTGCGCTTTAGGCCGTGATGATTGCCGACACATACACCCCCTGC
CGTGAATTCGACTGCTGCTCTTTTTGGATAGTTTTCTTCAGCGCGATCTC
TCCACTGGTACATATGATACGACGAGGTATATCTGTCTGACGATCCGTAT
GCATCCACGTTTGCGAATGTTGTGTTCTATTCCTGGGGCGAGAGGATTTC
CTTTTGCCTGTCTGCCCCATGAAGCTAATTGCTTTGCATCGAGAACACCA
ATCTTCTACATACGCAGGAAACCTCGTTTAGGTTTCACGCTCTGTTCCCC
GTGACGACGGCATTCGCTCGAAAAACCGGTCGGTGTCGGTTCCATCCGAT
CCATCGATCCATCGATTTTCAGGTACGAGATCTACCCGGAGATCGAGGAG
ATCTTTACTGAGCGGAAGGAAGCCTACATCGAGGAGCTGGCGCAACACTA
TGGCCAGGACATTCCCTTCATCTACGAGCACTGCCCGGACATGTGAGGAG
CGGATGTCGCGCGAAAGCCCTGCCTGCCTGCCTGGCCGACTGACTGACTT
GACTCCCTTCCAGTTTTTTTTTGTTGTTTTCCTCGAGTGTCTTTTGTCGT
TGTTGTTACTCCTCTTCGCTCGCGAGAGGAGGCATGTCGTGGTGTTGTTT
CCGAGTCCCGTTGTGGGGATCGTTCCATCTCCTGCCCCCCAAGGTTCGGA
CTGTTTCGTCTCTTTGCTTTTTGTTGTTACTCCGCTTGCCTCGCGAGAGA
GGCGGTTTCTTTCCGGTTCCGTTGTGGGGATTGTTCCGCCTCTTATCCCC
CCCGGGGTTTCGACGTCGTTGGCCCGATCGCAAGCCAGGATATGCCGTCG
CCACCTTTTCCTTGCCTAGAATGTCTGCGTAGAGTCGACCCTGCTGTAAA
GACACGCATGGTTTTGTACTTGGAATATGTCTTCAACGCGGGGAAGTGTC
CTTTGGATTCCGGGGGCACTTAGTGTGTCTGCGGGGCACGCTGCTTCTCA
GGTTTTTTTGTCCTTAACGCGGGGAGTTGACTTGAGACGAGTGCCTTTGA
AACGGGGACGACTGCAGTGTTATTTATCCCGCTCCTCTCCTGTCCTACCC
TATCTTCGAGCAACCGTACGGAACAGCGCGTCAAAAGGTCGGTCGGTCGC
TGCTGCTATGTCTAGCCTACCTCGTGCTGGAGGAATTTTTTGCTGTCCTT
TGTGGTGTGAGGAAAGACTATTCAGCGACGAAGACAGCTGGGTGCAACAG
CGGGAGGTTTGCTGTTGTTGCTGTACGTGGCGGGCTGTCCACCGCGTAGT
GTTGACATTTTTTTTTTTGGTCTTGACTTGAATCTTTTTTTTTTTTTCTC
GGCAGCGACAAGAACGACCCTAGCAGCTGGACGAATCCTAGAGAGTTTAA
GCTGGGAAAGCTTACCGAGCAGGACCGTAGCAACAAGTTCGACCGACCGC
CCCTGCAGAGCCAGGACGAGGTTGCCGAAGACCTCAAGTACAAGCGCACC
AACAAGGTGACCTGGCCTGACCAGCGTGCTGTAGTTGCTGCTGTCATTGT
TGTTGTTGTTGTTGTTGTTGTTGTGGTTGTGGTTGTCGTGGTGGTGGTGG
TGGTGGTTGTGGTGAAAGAGGTCCTCAGGCCCTTCCAAGTACACGCGCGG
GTCCGCCGGATGTTTTTGGTTGACGTTGATTGTCCCTTGAAATGTTCGTC
CCATTCATGCGAGACCTTCAAAGACGAAGAGCGAACTGTAAACCATCCTT
GCTCTTCTCATCCTGACTATTGTCTATTGATCGACGCCATGGCCATTTTT
TCGTTGATACTGCTGTGAAACTGGCTGTTGGTCTGCTGTTGTATTGTTCG
ATCCAGTTACAAACTGGCTTTCGTTTCGTCCGCTTCGTGTTTCTGATTGT
CGTCTATGGTTGCTTCTCTTCTCGTTTTTTCTGTTTGATTTTTCAAGGCT
ATCTACGCGGCCGTGAGGGAAGAGGAGGCCGCAGAGCTTACCAAGAAGTT
GGAGAAGGAGCCAAAGCTTCCCAAGAGGCGCTGGGCCTACGCCCTGAAGG
ACACGTCCTCTAAGGATTCGTCCATGGTATGTACCAACCGAGCATTTGCT
GTCTGGGTTGGGACGGAGTAGAGTTAGAAGAGAATACCCTCCAAGAGGGG
GGTCAAATATGATGTGCGCTAACAACATAGCTTCCCCAACAGGCGGTTGT
ACACGTCAGAATGAGTCTTTGGCTCACTCAGCGATGAAGCGTCACACTCT
ACAGTCCGTGTCCAGCAGAGCACGGCTTAGACAACAGCGCGCGGTTTCAC
CTCACTCCTCGTCGATTGTGTGTCTCTCTGTACAGTTGTACGGCATGTTA
GGGTCTGCATCTTGCTCCGGGTTGTGATGAAGCCCCCTCGGCCGCTCTCT
CTCTCTTCGTGTTGACGTTTGGACAAGCGGCGTGTGTGTTCGTTCTTGCC
GCTTGCTCGGGTTGTGACAAAGCCCTCGATACCCCACCCCCACCCTCTCT
CTCTTTGTGCCGACGCGTGGCAGGTGCCGCCCGTGCTGAGAGACGCGGAC
GGCGTGATGCGGGCGGCCACAGTGGACGAGGAGAGAGGACTGAGCTACGC
CGACGATAACCTCTTCCGTCGAGACGTCCGCCGATGGACGGCTCTTCGAG
AAATGCCCTGAGTCATGGTCATGTCGTTGGCCTTTGAGTCGTCATCATTG
ACCGTGTCGTCTCCCTTCTCGCCGGTTGTCGGGAAAGAGGGAGCACGTCT
TCTGTCTCTGGTTACAGCCGTGGATGGCGTGGAGATGTAGCGCGCGCACT
TGAGAAGCTAGCTCTAGTGTTGCCCAGGCTCCCGGTGGGTTGGTCGCCCT
TTCTGTGGGCTAATGGCCGCTGTCTACGATAGGTTTATTGTTGTAGGGGT
TCTTCAGGGGGCTCAGGAGTGGCTCAAGTTCTTACGTTTGGTAAACGAGT
AAAATATTGAGCGGGAAGTTCTCAACTGACGAGTTTTTTCCTTCTGCGGG
CGGCATCTGTAGCTCTGCAACATGATGATGAGTTGCCAAAGGCGGCACTG
CTGTGGTGACAGGAAATATCCAGCTGTGCTGCCGTTTCTGTTGGCCCGGG
GGCAGCTTCGCGGGATGCCTACCGAGTCTACGTACATACGTGGCGATGAG
GCAACCGGGTTGTTGGAAAACGGATCGTCTGTGGGGGGCTATACGCACGG
GGAGGAGATTGGTTTCGTTTACTCATTCACTCGTACGTGCCGAGATGGAC
GGTGTTCATTCACGACACGTTTTGGGTTCCTTGGTGGTGCACTTGCGTTC
ATTGGACTCTTGGTCTGTAGAGTGTGGAACCACGAACGAGTACCACCGTG
TACAATCCATGGTATGCGGGTTGGTTGGGTGTTTGTACGATGTCGTCACA
ATCATTCCATGGGATGCAGGTTGTTTGGGTGTTTCGTCGGTGGTTGGCCC
TTCGCGTCATCCTTGGCGCAAAAAGGTCCAGAGGAACGAGCGGCAGCAAA
TGATAAGTGTATGCTGAGAAATAGTGGATGTCACGGCCGTTCACAAGTCC
ACACCAAAGCCCATGCGCTCGCCATGATCCCGGTGCTATGCATATATGCG
TAGTTCCCCGATGATGATGTCATCATGTATCTGTAACAAGCGACATCGCC
AAGGCCCAATTGACTACAAGAAACAAGGAAGGGAAGAGTACATGCAAGAA
AAACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7546:1025..7180-

>mRNA_Ecto-sp13_S_contig7546.18735.1 ID=mRNA_Ecto-sp13_S_contig7546.18735.1|Name=mRNA_Ecto-sp13_S_contig7546.18735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7546:1025..7180- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCAAGTGCAAGATGTTCGACTTGTGGCAGGCGGACCCTGAGAAGCA
CACTGCGATGGCCCTGGCGAAGCAGTTTGGATTGCCATACCTAGATGTGC
AGGCCATCCTGACCCTCAAGATCAAGGCCAAGGAAAACGTGGAGACGATT
GAGGGGTACGAGATCTACCCGGAGATCGAGGAGATCTTTACTGAGCGGAA
GGAAGCCTACATCGAGGAGCTGGCGCAACACTATGGCCAGGACATTCCCT
TCATCTACGAGCACTGCCCGGACATCGACAAGAACGACCCTAGCAGCTGG
ACGAATCCTAGAGAGTTTAAGCTGGGAAAGCTTACCGAGCAGGACCGTAG
CAACAAGTTCGACCGACCGCCCCTGCAGAGCCAGGACGAGGTTGCCGAAG
ACCTCAAGTACAAGCGCACCAACAAGGCTATCTACGCGGCCGTGAGGGAA
GAGGAGGCCGCAGAGCTTACCAAGAAGTTGGAGAAGGAGCCAAAGCTTCC
CAAGAGGCGCTGGGCCTACGCCCTGAAGGACACGTCCTCTAAGGATTCGT
CCATGGTGCCGCCCGTGCTGAGAGACGCGGACGGCGTGATGCGGGCGGCC
ACAGTGGACGAGGAGAGAGGACTGAGCTACGCCGACGATAACCTCTTCCG
TCGAGACGTCCGCCGATGGACGGCTCTTCGAGAAATGCCCTGA
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