prot_Ecto-sp13_S_contig7544.18734.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7544.18734.1
Unique Nameprot_Ecto-sp13_S_contig7544.18734.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length605
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7544.18734.1 vs. uniprot
Match: D8LNR4_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR4_ECTSI)

HSP 1 Score: 883 bits (2281), Expect = 4.080e-311
Identity = 489/586 (83.45%), Postives = 499/586 (85.15%), Query Frame = 0 
Query:    1 MKPSISIDLPGWCTLRRDPKEAESDE-LLALMDDVASSGGIRDLDGRGYSSNSNASGENSGXXXXXXXXXDDAIARLFSVGGLKRKRSSDSRQQTGDGGETRSSGSGSAGRAGRGTARSDLEAEAYADWPCVRCTFVNAYTDDACGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALKDVLEDSSDXDNDDHSQRRESPASLKTKPVEDETPVSTASASETTSAAPVDDNTRRTKTLQQHPGAGGDCVISILPPDLLLQCAEYLGDARSLCRVREVCVGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQKRQLKVYDLGTTPPNRGSSSSAFGNGLTAGVPTPSPSQKTGLSSGGPPALAAGKGTPWSTGSGSXXXXXXVASSCVVCGLIQRDGYSGKDCEMCASALVVVRGRESPATPRLAYTRVNLSGGGGSCSPFSSPTTMRRQQHPRCLVTGAGSSPSPDLRQKGRVGGIPPPGATADGAREAERGSGS-RSSNGGAQGLEEGFGGGARSVDWHFLVKRLAEEKRIASGWGSLQHGWVWLQRELQNMLRRRRGHEQLGAAPSL 582
            MKPSISIDLPGWCTLRRDPKE ESDE LLALMDDVA SGG  DLDG       NASGENSG XXXXXXXX  AIARLFSVGGLKRKRSSDSRQQTGDGGETRSSGSGSAGRAGRGTARSDLEAEAYADWPCVRCTF+NAYT+DACGG                                       ALKDVLEDSSD +NDDH++R E PAS  TKPVEDETPVSTASASETTSAAP DDNT RTKTLQQHPG GG CVISILPPDLLLQCAEYLGDARSLCRVREV +GWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQ RQLKVYDLGT PPNRGSS+SAFGNGLTAGV TPSPSQKT LSSGGPPALAAGKGTPWS+GSGS      VASSCVVCGLIQRDGYSGKDCEMCASALV+VRGRESPATPRLAYTRVNLSGGGGSCS FSSPTTMR QQHP CLVTGAGSS SPDLRQKGRVGGI P GATADGAREAER  GS  SS GGAQGLEE FGGGARSVDWHFLVKRLAEEKRIA+GWGSLQHGWVWLQRELQNMLRRRRGHEQLG APSL
Sbjct:    1 MKPSISIDLPGWCTLRRDPKEVESDEQLLALMDDVAGSGGTHDLDG-------NASGENSGNXXXXXXXXXXAIARLFSVGGLKRKRSSDSRQQTGDGGETRSSGSGSAGRAGRGTARSDLEAEAYADWPCVRCTFINAYTEDACGGCGGANKKRDRLLRERREEAEKLSRLQTARRCRDRSLKEEALKDVLEDSSDSENDDHNRRGEGPASHTTKPVEDETPVSTASASETTSAAPADDNTGRTKTLQQHPGTGGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQNRQLKVYDLGTRPPNRGSSASAFGNGLTAGVSTPSPSQKTRLSSGGPPALAAGKGTPWSSGSGSAAAAV-VASSCVVCGLIQRDGYSGKDCEMCASALVLVRGRESPATPRLAYTRVNLSGGGGSCSSFSSPTTMRWQQHPGCLVTGAGSSRSPDLRQKGRVGGITPAGATADGAREAERSIGSCNSSGGGAQGLEEEFGGGARSVDWHFLVKRLAEEKRIANGWGSLQHGWVWLQRELQNMLRRRRGHEQLGPAPSL 578
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7544.18734.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNR4_ECTSI4.080e-31183.45RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..174
NoneNo IPR availableGENE3D1.20.1280.50coord: 256..303
e-value: 1.4E-6
score: 30.1
NoneNo IPR availableGENE3D2.20.28.140coord: 122..206
e-value: 3.0E-5
score: 25.7
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 128..147
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 247..309

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7544contigEcto-sp13_S_contig7544:679..4845 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7544.18734.1mRNA_Ecto-sp13_S_contig7544.18734.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7544 535..7365 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7544.18734.1 ID=prot_Ecto-sp13_S_contig7544.18734.1|Name=mRNA_Ecto-sp13_S_contig7544.18734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=605bp
MKPSISIDLPGWCTLRRDPKEAESDELLALMDDVASSGGIRDLDGRGYSS
NSNASGENSGNDDNGSDDDDDAIARLFSVGGLKRKRSSDSRQQTGDGGET
RSSGSGSAGRAGRGTARSDLEAEAYADWPCVRCTFVNAYTDDACGGCGGA
NKKRDRLLRERREEAEKLSRLRTARRCRDRREEALKDVLEDSSDSDNDDH
SQRRESPASLKTKPVEDETPVSTASASETTSAAPVDDNTRRTKTLQQHPG
AGGDCVISILPPDLLLQCAEYLGDARSLCRVREVCVGWLLALDDREAGSR
LWRPLFYRLRASGSIHKATDATGQQKRQLKVYDLGTTPPNRGSSSSAFGN
GLTAGVPTPSPSQKTGLSSGGPPALAAGKGTPWSTGSGSAAAAAAVASSC
VVCGLIQRDGYSGKDCEMCASALVVVRGRESPATPRLAYTRVNLSGGGGS
CSPFSSPTTMRRQQHPRCLVTGAGSSPSPDLRQKGRVGGIPPPGATADGA
REAERGSGSRSSNGGAQGLEEGFGGGARSVDWHFLVKRLAEEKRIASGWG
SLQHGWVWLQRELQNMLRRRRGHEQLGAAPSLAAAVPPPPLLKSSQPLSL
APQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036047F-box-like_dom_sf